KCC002509A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002509A_C01 KCC002509A_c01
CGTTGTCAAACACTCTCATCAGTTTTCAGTTTGTAAGGGAGGTCTTCAGCACAACGTCTT
GTGCCTTCGTGCAAGCCGAAGCTCCCTGCGACTTCCCTCCAGCATCGCCCTTTAAGCCAT
CCGTTTACCGGGCTGAGGGTGCTACATTAGCTCAACCCCAGAATCCCCTCGCAAATTCAC
TGTGAAGCAAGGCTTTGCCAAACTACGGACTGCGACGTTGGGTGCTTGCTCTCGTTTTTG
AAATAATAAAGACCATAATGATCATGTCAAGTACTATAAACCTATCTGGGCGACGTCAGG
CAACGTCAGTTCGGCAGCCTGGCCATTCGGCGTTGTCATGCGCTGCAATGCCTCGCTTTG
TCGGCGAGCGCCTGCGCAGCCGCGAGGCGCCGACGGCTGCTCGGCGCCGGACAGTTACAT
GCGCGGCGCATAAGGGCGCGGCTGCCGCGGCCGTGGCGGCCACGGCCACGGCAACCGTAT
CCGCGCCCCCGCCGGGACCTCCGGGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002509A_C01 KCC002509A_c01
         (507 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00094309.1| COG0790: FOG: TPR repeat, SEL1 subfamily [Nov...    40  0.022
gb|AAO01033.1| CG4733-PA [Drosophila littoralis]                       36  0.31
dbj|BAB63777.1| P0004A09.13 [Oryza sativa (japonica cultivar-gro...    35  0.41
gb|AAQ64683.1| NIMA-related kinase 2 [Chlamydomonas reinhardtii]       35  0.41
ref|XP_309913.1| ENSANGP00000015050 [Anopheles gambiae] gi|21293...    35  0.41

>ref|ZP_00094309.1| COG0790: FOG: TPR repeat, SEL1 subfamily [Novosphingobium
           aromaticivorans]
          Length = 432

 Score = 39.7 bits (91), Expect = 0.022
 Identities = 26/62 (41%), Positives = 33/62 (52%)
 Frame = -2

Query: 503 RRSRRGRGYGCRGRGRHGRGSRALMRRACNCPAPSSRRRLAAAQALADKARHCSA*QRRM 324
           RR    RG G RGRG+ GRG R   +R  + PA   +R L A  ++  K R   A  RR+
Sbjct: 5   RRGAGRRGAGRRGRGQRGRGQRGRGQRERSVPARIRKRTLVAMASIGLKTRGGGA-CRRL 63

Query: 323 AR 318
           AR
Sbjct: 64  AR 65

>gb|AAO01033.1| CG4733-PA [Drosophila littoralis]
          Length = 936

 Score = 35.8 bits (81), Expect = 0.31
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +3

Query: 393 TAARRRTVTCAAHKGAAAAAVAATATATVSAPPPGP 500
           TA++  T T    K A AAA AA ATAT +A P  P
Sbjct: 34  TASKTTTTTTTTRKPATAAAAAAAATATATASPKSP 69

>dbj|BAB63777.1| P0004A09.13 [Oryza sativa (japonica cultivar-group)]
          Length = 207

 Score = 35.4 bits (80), Expect = 0.41
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +3

Query: 261 IMSSTINLSGRRQATSVRQPGHSALSCAAMP--RFVGERLRSREAPTAARRRTVTCAAHK 434
           + +  ++  G R+    R+ G     C   P  R  GE  R   A TAA       AA  
Sbjct: 28  VAAVAVDADGERERERERERGRDGRLCRTPPSLRRAGETGRRAAAATAASVGKGAAAASV 87

Query: 435 GAAAAAVAATA---TATVSAPPPGPPG 506
           G AAAA AA       +  +PPP P G
Sbjct: 88  GEAAAAAAALRRRHRRSPLSPPPQPAG 114

>gb|AAQ64683.1| NIMA-related kinase 2 [Chlamydomonas reinhardtii]
          Length = 653

 Score = 35.4 bits (80), Expect = 0.41
 Identities = 19/45 (42%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
 Frame = -1

Query: 495 PAGARIRLPWPWPPRPRQPRP-YAPRM*LSGAEQPSAPRGCAGAR 364
           PA A  R+P   PP P  P+P Y P M  + A  P AP   AG +
Sbjct: 361 PAAAVNRVPGGMPPMPPMPKPNYPPPMKAAAAYPPPAPSAAAGGK 405

>ref|XP_309913.1| ENSANGP00000015050 [Anopheles gambiae] gi|21293541|gb|EAA05686.1|
           ENSANGP00000015050 [Anopheles gambiae str. PEST]
          Length = 302

 Score = 35.4 bits (80), Expect = 0.41
 Identities = 31/84 (36%), Positives = 33/84 (38%), Gaps = 13/84 (15%)
 Frame = -3

Query: 499 GPGGGADTVAVAVAATAAAAAPLCAAHVTVRRRAAV-------GASRLRRRS------PT 359
           G    A TVA A AA +AA A   AA   V +R  V        A RL  R       P 
Sbjct: 28  GTAAAAATVAAAAAAASAATAAAAAAAAAVLQREPVPAGAGDDSADRLAARGCPPEADPA 87

Query: 358 KRGIAAHDNAEWPGCRTDVA*RRP 287
            R  AAH  A  PG     A  RP
Sbjct: 88  ARERAAHRQAAAPGLHRGAAAGRP 111

 Score = 33.5 bits (75), Expect = 1.6
 Identities = 24/63 (38%), Positives = 26/63 (41%)
 Frame = +3

Query: 318 PGHSALSCAAMPRFVGERLRSREAPTAARRRTVTCAAHKGAAAAAVAATATATVSAPPPG 497
           P  S    AA     G    +  A TAA   TV  AA   +AA A AA A A V    P 
Sbjct: 4   PSPSPSPPAAAAAGAGGEAAAARAGTAAAAATVAAAAAAASAATAAAAAAAAAVLQREPV 63

Query: 498 PPG 506
           P G
Sbjct: 64  PAG 66



EST assemble image


clone accession position
1 HCL048d07_r AV642254 1 122
2 LCL078c12_r AV630402 1 316
3 LCL054a02_r AV629194 47 507




Chlamydomonas reinhardtii
Kazusa DNA Research Institute