KCC002502A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002502A_C01 KCC002502A_c01
cttgaattattagggtcagcgagctcttgtgagggctctgaactcttccgttgactcgcg
ctcttcagctctcaaggaaaAGGGGCCGACTCTGCATAGACAAATGACGTAGCAACTTAT
GAATAAGACAACTTGACCTTACCAGGTTGGTCTTCAACAACGAAATCGCGCAAGCGACAG
CAGCTGCGCCCAAATAAACAGACAGAGACTTCGGTGCACACGCTGCGCCCAACCATGGAC
CTCGAGGACTTTGATGACGACTCATCGCTGACGCCAGCGCAGCTCATCGCCAAGCAAAAG
CAAGCCTTCGGCGGCGATTCCGACCTCAACTCTGCGTGGCGTGGGGGTGCACAGCCAACG
CGGCCAGCACGAAGGGATGACGACTTCCGTATCCCTGCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002502A_C01 KCC002502A_c01
         (401 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC70644.1| glycoprotein [Borna disease virus]                     33  0.73
gb|AAA20666.1| unknown [Borna disease virus]                           33  0.73
pir||JG0194 androgen receptor - Japanese eel                           33  0.95
dbj|BAA75464.1| androgen receptor alpha [Anguilla japonica]            33  0.95
gb|AAM68150.1| glycoprotein [Borna disease virus]                      33  0.95

>emb|CAC70644.1| glycoprotein [Borna disease virus]
          Length = 503

 Score = 33.5 bits (75), Expect = 0.73
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 130 NLTLPGWSSTTKSRKRQQLRPNKQTETSVHTLRPTMDLEDFDDDSSLTPAQLIAKQKQAF 309
           N+T   ++S+ +S+ R++ R  +Q E  VH LRPT  L+D  +D  +  + L+       
Sbjct: 230 NVTCVNYTSSCRSKLRRRRRDTQQIEYLVHKLRPT--LKDAWEDCEILQSLLLGMFGTGI 287

Query: 310 GGDSDLNSAW 339
              S     W
Sbjct: 288 ASASQFLRGW 297

>gb|AAA20666.1| unknown [Borna disease virus]
          Length = 353

 Score = 33.5 bits (75), Expect = 0.73
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 130 NLTLPGWSSTTKSRKRQQLRPNKQTETSVHTLRPTMDLEDFDDDSSLTPAQLIAKQKQAF 309
           N+T   ++S+ +S+ R++ R  +Q E  VH LRPT  L+D  +D  +  + L+       
Sbjct: 80  NVTCVNYTSSCRSKLRRRRRDTQQIEYLVHKLRPT--LKDAWEDCEILQSLLLGMFGTGI 137

Query: 310 GGDSDLNSAW 339
              S     W
Sbjct: 138 ASASQFLRGW 147

>pir||JG0194 androgen receptor - Japanese eel
          Length = 848

 Score = 33.1 bits (74), Expect = 0.95
 Identities = 20/67 (29%), Positives = 29/67 (42%)
 Frame = -1

Query: 395 GIRKSSSLRAGRVGCAPPRHAELRSESPPKACFCLAMSCAGVSDESSSKSSRSMVGRSVC 216
           G+R S  L  G  GC   + + L   S  +     + +CAG S      ++ S   R +C
Sbjct: 129 GVRASGPLLPGSSGCNSGQKSSLACTSQQRETTSQSDTCAGESCSEHQATTISETARELC 188

Query: 215 TEVSVCL 195
             VSV L
Sbjct: 189 NAVSVSL 195

>dbj|BAA75464.1| androgen receptor alpha [Anguilla japonica]
          Length = 848

 Score = 33.1 bits (74), Expect = 0.95
 Identities = 20/67 (29%), Positives = 29/67 (42%)
 Frame = -1

Query: 395 GIRKSSSLRAGRVGCAPPRHAELRSESPPKACFCLAMSCAGVSDESSSKSSRSMVGRSVC 216
           G+R S  L  G  GC   + + L   S  +     + +CAG S      ++ S   R +C
Sbjct: 129 GVRASGPLLPGSSGCNSGQKSSLACTSQQRETTSQSDTCAGESCSEHQATTISETARELC 188

Query: 215 TEVSVCL 195
             VSV L
Sbjct: 189 NAVSVSL 195

>gb|AAM68150.1| glycoprotein [Borna disease virus]
          Length = 503

 Score = 33.1 bits (74), Expect = 0.95
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 130 NLTLPGWSSTTKSRKRQQLRPNKQTETSVHTLRPTMDLEDFDDDSSLTPAQLIAKQKQAF 309
           N+T   ++S+ +S+ R++ R  +Q E  VH LRPT  L+D  +D  +  + L+       
Sbjct: 230 NVTCVNYTSSCRSKLRRRRRDTQQIEYLVHKLRPT--LKDAWEDCEILQSLLLGVFGTGI 287

Query: 310 GGDSDLNSAW 339
              S     W
Sbjct: 288 ASASQFLRGW 297



EST assemble image


clone accession position
1 HCL046h10_r AV642177 1 401
2 MXL096a01_r BP098591 121 327




Chlamydomonas reinhardtii
Kazusa DNA Research Institute