KCC002501A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002501A_C01 KCC002501A_c01
cccgggctgaCGGGAGCCAGAGCTGCGCTCTAAATATAGTTCCGCAAGGACGTAACACAC
GAAAGGCCAATTCAGTGATCAATTACCTATCAGTATTCGATACGTAGGTCACCAGAACAC
CCGAATCCTCGTCAAAGCTCTGGGTGGCAGCGGTATTTGCAATCGAGACCATGCAGCTGC
GACAGGCGGGCCTGAAGGCTCGCAGCACCGCTTCGGGTGCAGTGCCATGCATTCCAGTTG
GTCTTCACGCTGGCGCAATCGGCATGCAGTCGGCGGTGGCTGGCGGGCGCGCTGCGGGGC
GAGGACGTGTTGCAACACGACTACCGGCACCGAAGCGCCAGTCTGAGCGCGTACGCGTGG
TGGCTCAGAGCGTTTCGACTCTTTCTACTTCACAGCAGCTCTATAGCTCAGTGGCTGTCG
GCAAGCCCGAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002501A_C01 KCC002501A_c01
         (432 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_059329.2| similar to a putative protein with homology to ...    34  0.53
dbj|BAB83036.1| a putative protein with homology to a sequence b...    34  0.53
ref|NP_037436.1| zinc finger, DHHC domain containing 1; DHHC-dom...    34  0.53
ref|NP_079696.1| small proline rich-like 10 [Mus musculus] gi|12...    34  0.53
ref|NP_902078.1| hypothetical protein CV2408 [Chromobacterium vi...    34  0.53

>ref|XP_059329.2| similar to a putative protein with homology to a sequence between
           V2 and V3P segments within T cell gamma receptor region
           [Homo sapiens]
          Length = 149

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 328 AGSRVATRPR-PAARPPATADCMPIAPA*RPTGMHGTAPEAVLRAFRPACRSCMVSIANT 152
           A SR A+RP  P+A PPA       APA  P+G  G   +    A   A  S +  +  +
Sbjct: 8   AASRPASRPAAPSAHPPAHPPPSAAAPAPAPSGQPGLMAQMATTAAGVAVGSAVGHVMGS 67

Query: 151 AATQSFDEDS 122
           A T +F   S
Sbjct: 68  ALTGAFSGGS 77

>dbj|BAB83036.1| a putative protein with homology to a sequence between V2 and V3P
           segments within T cell gamma receptor region [Homo
           sapiens]
          Length = 142

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 328 AGSRVATRPR-PAARPPATADCMPIAPA*RPTGMHGTAPEAVLRAFRPACRSCMVSIANT 152
           A SR A+RP  P+A PPA       APA  P+G  G   +    A   A  S +  +  +
Sbjct: 8   AASRPASRPAAPSAHPPAHPPPSAAAPAPAPSGQPGLMAQMATTAAGVAVGSAVGHVMGS 67

Query: 151 AATQSFDEDS 122
           A T +F   S
Sbjct: 68  ALTGAFSGGS 77

>ref|NP_037436.1| zinc finger, DHHC domain containing 1; DHHC-domain-containing
           cysteine-rich protein; chromosome 16 open reading frame
           1 [Homo sapiens] gi|28202100|sp|Q8WTX9|ZDH1_HUMAN Zinc
           finger DHHC domain containing protein 1 (Zinc finger
           protein 377) (DHHC-domain-containing cysteine-rich
           protein 1) gi|18314614|gb|AAH21908.1| Zinc finger, DHHC
           domain containing 1 [Homo sapiens]
          Length = 485

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 21/51 (41%), Positives = 26/51 (50%)
 Frame = -1

Query: 282 QPPPTACRLRQREDQLECMALHPKRCCEPSGPPVAAAWSRLQIPLPPRALT 130
           Q PP  CR R R   ++C  L P+      GPP AAA +R +IP  P   T
Sbjct: 383 QAPPCLCRKRGRGACIKCERLRPRIRRRGLGPP-AAAPARRRIPRTPALCT 432

>ref|NP_079696.1| small proline rich-like 10 [Mus musculus]
           gi|12834728|dbj|BAB23021.1| unnamed protein product [Mus
           musculus] gi|12835458|dbj|BAB23260.1| unnamed protein
           product [Mus musculus] gi|12859776|dbj|BAB31774.1|
           unnamed protein product [Mus musculus]
          Length = 182

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +2

Query: 143 GGSGICNRDHAAATGGPEGSQHRFGCSAMHSSWSSRWRNRHAVGGGWRARCGARTCC 313
           GGS  C      ++GG  G     G S   S  SS   N H   GG  + C +  CC
Sbjct: 128 GGSSCCGSSSGGSSGGSSGGSSCCGSSGGSSGGSSSGSNSHQQSGG--SSCCSGGCC 182

>ref|NP_902078.1| hypothetical protein CV2408 [Chromobacterium violaceum ATCC 12472]
           gi|34103719|gb|AAQ60080.1| hypothetical protein CV2408
           [Chromobacterium violaceum ATCC 12472]
          Length = 317

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 4/87 (4%)
 Frame = -2

Query: 428 GLADSH*AIELL*SRKSRNALSHHAYALRLALRCR*SCCNTSSPRSAPASH---RRLHAD 258
           GL DSH    +L      NA S  A+ +     C+    N S+PR   +      R+  D
Sbjct: 148 GLQDSHNVQSILQPVLGWNAFSDQAWTIASWNCCKNGAANYSAPRKVASGDWITGRVWHD 207

Query: 257 CASVKTNWNAWHC-TRSGAASLQARLS 180
           CA+  T   +W+  TR    ++Q  LS
Sbjct: 208 CAAGATACGSWNVETRDATQNIQTTLS 234



EST assemble image


clone accession position
1 LCL030g02_r AV627698 1 358
2 LCL034h07_r AV627984 11 271
3 LCL074c10_r AV630150 49 359
4 HCL046g12_r AV642173 58 432
5 LCL004d11_r AV626216 137 364




Chlamydomonas reinhardtii
Kazusa DNA Research Institute