KCC002500A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002500A_C01 KCC002500A_c01
GTAGATCTATGCATAAATAGGGGTTCTCAATCAACTTGATACACGACAGGGCAACCTCTG
ACTTTCGTGGCCGAGCTCCCGCGCTTACCCTTGAATGCTTTTATACTTCTATCTATACAC
GACTGAGTAAATTGTACGTTTAGACTATAGGTTAAGGAGTAGCTTGTTGACGCGCGAAAG
TCTTGCGGACATTCGGGGATCTCCGCGTGTGCTTAAACTGAGCTCCAATGGCATCAGCGG
CGACCTTTAAAGATCAGGGCAATGAGGAGTTCAAGAAGGAGAACTTCCTAAAGGCCGCGG
CGCTGTACACCCAAGCCATCAAAGCGGATCCAGAGAATGCGGTGTTGTACAGCAACCGCT
CGGCGGCCCTGCTTAAGCTGAACAAGGTCACCAAGGCTCTTGAGGACGCGGACGCCGCCA
TCAAACTCAGGCCCGAGTGGGAGAAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002500A_C01 KCC002500A_c01
         (447 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_171915.1| tetratricopeptide repeat (TPR)-containing prote...    95  2e-19
pir||T00954 hypothetical protein F20D22.4 - Arabidopsis thaliana...    95  2e-19
gb|AAH46709.1| Similar to stress-induced-phosphoprotein 1 (Hsp70...    70  9e-12
gb|AAM77586.1|AF506290_1 stress-induced phosphoprotein STI1; XST...    70  9e-12
gb|AAC12945.1| Hsp70/Hsp90 organizing protein homolog [Drosophil...    70  9e-12

>ref|NP_171915.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis
           thaliana] gi|19423984|gb|AAL87273.1| unknown protein
           [Arabidopsis thaliana] gi|21281239|gb|AAM45091.1|
           unknown protein [Arabidopsis thaliana]
          Length = 328

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 46/68 (67%), Positives = 54/68 (78%)
 Frame = +3

Query: 243 TFKDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALEDADAAI 422
           + K++GNE FK  NFLKAAALYTQAIK DP NA LYSNR+AA L L K++KAL DA+  I
Sbjct: 17  SLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALADAETTI 76

Query: 423 KLRPEWEK 446
           KL P+WEK
Sbjct: 77  KLNPQWEK 84

>pir||T00954 hypothetical protein F20D22.4 - Arabidopsis thaliana
           gi|3142292|gb|AAC16743.1| Contains similarity to
           tetratricopeptide repeat protein gb|U46571 from home
           sapiens.  EST gb|Z47802 and gb|Z48402 come from this
           gene. [Arabidopsis thaliana]
          Length = 358

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 46/68 (67%), Positives = 54/68 (78%)
 Frame = +3

Query: 243 TFKDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALEDADAAI 422
           + K++GNE FK  NFLKAAALYTQAIK DP NA LYSNR+AA L L K++KAL DA+  I
Sbjct: 17  SLKEKGNEFFKAGNFLKAAALYTQAIKLDPSNATLYSNRAAAFLSLVKLSKALADAETTI 76

Query: 423 KLRPEWEK 446
           KL P+WEK
Sbjct: 77  KLNPQWEK 84

>gb|AAH46709.1| Similar to stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing
           protein) [Xenopus laevis]
          Length = 543

 Score = 69.7 bits (169), Expect = 9e-12
 Identities = 34/73 (46%), Positives = 46/73 (62%)
 Frame = +3

Query: 228 MASAATFKDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALED 407
           M +A   K++GN+     N  +A   YT+AIK DP+N VLYSNRSAA  K  + TKALED
Sbjct: 1   MEAANALKEKGNKALSAGNLDEAVKCYTEAIKLDPKNHVLYSNRSAAYAKKKEFTKALED 60

Query: 408 ADAAIKLRPEWEK 446
               ++L+ +W K
Sbjct: 61  GSKTVELKADWGK 73

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 27/66 (40%), Positives = 44/66 (65%)
 Frame = +3

Query: 249 KDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALEDADAAIKL 428
           K++GNE F+K ++ +A   Y++AIK +P +A LYSNR+A   KL +   A++D +  I+L
Sbjct: 364 KNKGNESFQKGDYPQAMKHYSEAIKRNPNDAKLYSNRAACYTKLLEFLLAVKDCEECIRL 423

Query: 429 RPEWEK 446
            P + K
Sbjct: 424 EPSFIK 429

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +3

Query: 249 KDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALEDADAAIKL 428
           K+ GNE +KK++F  A   Y QA + DP N    +N++A   ++   +K  E  + AI++
Sbjct: 229 KELGNEAYKKKDFETALKHYGQARELDPANMTYITNQAAVYFEMGDYSKCRELCEKAIEV 288

Query: 429 RPE 437
             E
Sbjct: 289 GRE 291

>gb|AAM77586.1|AF506290_1 stress-induced phosphoprotein STI1; XSTI1 [Xenopus laevis]
          Length = 543

 Score = 69.7 bits (169), Expect = 9e-12
 Identities = 34/73 (46%), Positives = 46/73 (62%)
 Frame = +3

Query: 228 MASAATFKDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALED 407
           M +A   K++GN+     N  +A   YT+AIK DP+N VLYSNRSAA  K  + TKALED
Sbjct: 1   MEAANALKEKGNKALSAGNLDEAVKCYTEAIKLDPKNHVLYSNRSAAYAKKKEFTKALED 60

Query: 408 ADAAIKLRPEWEK 446
               ++L+ +W K
Sbjct: 61  GSKTVELKADWGK 73

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 27/66 (40%), Positives = 44/66 (65%)
 Frame = +3

Query: 249 KDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALEDADAAIKL 428
           K++GNE F+K ++ +A   Y++AIK +P +A LYSNR+A   KL +   A++D +  I+L
Sbjct: 364 KNKGNESFQKGDYPQAMKHYSEAIKRNPNDAKLYSNRAACYTKLLEFLLAVKDCEECIRL 423

Query: 429 RPEWEK 446
            P + K
Sbjct: 424 EPSFIK 429

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +3

Query: 249 KDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALEDADAAIKL 428
           K+ GNE +KK++F  A   Y QA + DP N    +N++A   ++   +K  E  + AI++
Sbjct: 229 KELGNEAYKKKDFETALKHYGQARELDPANMTYITNQAAVYFEMGDYSKCRELCEKAIEV 288

Query: 429 RPE 437
             E
Sbjct: 289 GRE 291

>gb|AAC12945.1| Hsp70/Hsp90 organizing protein homolog [Drosophila melanogaster]
          Length = 489

 Score = 69.7 bits (169), Expect = 9e-12
 Identities = 34/66 (51%), Positives = 43/66 (64%)
 Frame = +3

Query: 249 KDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALEDADAAIKL 428
           K++GN+    E F +A A YT+AI  D +N VLYSNRSAA  K  K  +ALEDA+  I+L
Sbjct: 8   KEKGNQALSAEKFDEAVAAYTEAIALDDQNHVLYSNRSAAFAKAGKFQEALEDAEKTIQL 67

Query: 429 RPEWEK 446
            P W K
Sbjct: 68  NPTWPK 73

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 28/66 (42%), Positives = 39/66 (58%)
 Frame = +3

Query: 249 KDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALEDADAAIKL 428
           K+QGN  FK  ++  A   YT+AIK +P++  LYSNR+A   KL      L+D D  IKL
Sbjct: 313 KEQGNLFFKNGDYSTAVKHYTEAIKRNPDDPKLYSNRAACYTKLAAFDLGLKDCDTCIKL 372

Query: 429 RPEWEK 446
             ++ K
Sbjct: 373 DEKFIK 378

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 17/63 (26%), Positives = 33/63 (51%)
 Frame = +3

Query: 249 KDQGNEEFKKENFLKAAALYTQAIKADPENAVLYSNRSAALLKLNKVTKALEDADAAIKL 428
           K+ GN  +KK++F  A   Y  AI+ DP +   Y+N +A   +  +  + ++  +  I++
Sbjct: 178 KELGNAAYKKKDFETALKHYHAAIEHDPTDITFYNNIAAVHFERKEYEECIKQCEKGIEV 237

Query: 429 RPE 437
             E
Sbjct: 238 GRE 240



EST assemble image


clone accession position
1 HCL046g05_r AV642168 1 417
2 LCL099h05_r AV631788 1 447




Chlamydomonas reinhardtii
Kazusa DNA Research Institute