KCC002499A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002499A_C01 KCC002499A_c01
caccgcgtgcagggctttcgtctgccccgaccgcgaccactcgctctgagcgacggatgg
ccacctccttcaaggccgcgAAGGCCACTACTGGTTGTGGTAGCCATACGCACACTCCTC
AGTCTGTTCCCATGGCAGCGGGAGCTATGCGTCGGGCCCTGCCCCTGGTTCGCCAGCTTG
CGGGCCGCACGCCGGTCGTTGCCGCGTCGCCCCTTGCGGCCCCCTCTCGCGGCGCCCACC
CCGCCCCCAGCGTGCTGACCGCTGCGGCAGGCACCAGCGCCTCCGCCACCACGCTGGCGC
CATCCGCCGCCTCCTCCGTGCCCGGACCCGCCAAGAAGATGACGGGCGCGGAGATCCGCG
AGGCGTTCCTGTCCTTCTACGAGTCCAAGGGCCACACGCGGCTGCCCTCCTCCAGTCTGG
TGCCGGAGGACCCAACCGTGCTGCTCACCATCGCCGGAATGCTCCAGTTCAAGCCCGTGT
TCCTAGGCCAGGCCCCTCGCAAGGTGGCCACCGCCACCACCACCCAGAAGTGCGTGCGCA
CCAACGACATCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002499A_C01 KCC002499A_c01
         (552 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana]         108  6e-23
ref|NP_680210.2| alanine--tRNA ligase -related [Arabidopsis thal...   108  6e-23
ref|NP_898449.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 81...   107  8e-23
ref|NP_682893.1| alanyl-tRNA synthetase [Thermosynechococcus elo...   107  8e-23
sp|Q8DH56|SYA_SYNEL Alanyl-tRNA synthetase (Alanine--tRNA ligase...   106  2e-22

>dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 954

 Score =  108 bits (269), Expect = 6e-23
 Identities = 50/74 (67%), Positives = 61/74 (81%)
 Frame = +3

Query: 330 AKKMTGAEIREAFLSFYESKGHTRLPSSSLVPEDPTVLLTIAGMLQFKPVFLGQAPRKVA 509
           +K ++G  IR  FL F+ S+GH  LPSSSLVPEDPTVLLTIAGMLQFKP+FLG+ PR+V 
Sbjct: 51  SKDVSGDSIRRRFLEFFASRGHKVLPSSSLVPEDPTVLLTIAGMLQFKPIFLGKVPREVP 110

Query: 510 TATTTQKCVRTNDI 551
            ATT Q+C+RTND+
Sbjct: 111 CATTAQRCIRTNDL 124

>ref|NP_680210.2| alanine--tRNA ligase -related [Arabidopsis thaliana]
          Length = 978

 Score =  108 bits (269), Expect = 6e-23
 Identities = 50/74 (67%), Positives = 61/74 (81%)
 Frame = +3

Query: 330 AKKMTGAEIREAFLSFYESKGHTRLPSSSLVPEDPTVLLTIAGMLQFKPVFLGQAPRKVA 509
           +K ++G  IR  FL F+ S+GH  LPSSSLVPEDPTVLLTIAGMLQFKP+FLG+ PR+V 
Sbjct: 75  SKDVSGDSIRRRFLEFFASRGHKVLPSSSLVPEDPTVLLTIAGMLQFKPIFLGKVPREVP 134

Query: 510 TATTTQKCVRTNDI 551
            ATT Q+C+RTND+
Sbjct: 135 CATTAQRCIRTNDL 148

>ref|NP_898449.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 8102]
           gi|33639491|emb|CAE08875.1| Alanyl-tRNA synthetase
           [Synechococcus sp. WH 8102]
          Length = 889

 Score =  107 bits (268), Expect = 8e-23
 Identities = 52/83 (62%), Positives = 64/83 (76%)
 Frame = +3

Query: 303 SAASSVPGPAKKMTGAEIREAFLSFYESKGHTRLPSSSLVPEDPTVLLTIAGMLQFKPVF 482
           +AASS    +   +G +IREAFL+FY  +GH R+ S+SL+PEDPTVLLTIAGML FKPVF
Sbjct: 3   AAASSSSAASAPRSGEDIREAFLNFYAERGHQRMASASLIPEDPTVLLTIAGMLPFKPVF 62

Query: 483 LGQAPRKVATATTTQKCVRTNDI 551
           LGQ  R    AT++QKC+RTNDI
Sbjct: 63  LGQQQRPAPRATSSQKCIRTNDI 85

>ref|NP_682893.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1]
           gi|22295830|dbj|BAC09655.1| alanyl-tRNA synthetase
           [Thermosynechococcus elongatus BP-1]
          Length = 891

 Score =  107 bits (268), Expect = 8e-23
 Identities = 54/87 (62%), Positives = 66/87 (75%)
 Frame = +3

Query: 291 TLAPSAASSVPGPAKKMTGAEIREAFLSFYESKGHTRLPSSSLVPEDPTVLLTIAGMLQF 470
           T +PSA++        +TG +IR+ FL FY +KGHT LPS+SL+P+DPTVLLTIAGML F
Sbjct: 2   TSSPSASAMTA-----LTGDQIRQKFLDFYAAKGHTILPSASLIPDDPTVLLTIAGMLPF 56

Query: 471 KPVFLGQAPRKVATATTTQKCVRTNDI 551
           KP+FLGQ   KV  ATT QKC+RTNDI
Sbjct: 57  KPIFLGQEAPKVPRATTAQKCLRTNDI 83

>sp|Q8DH56|SYA_SYNEL Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS)
          Length = 882

 Score =  106 bits (265), Expect = 2e-22
 Identities = 50/71 (70%), Positives = 59/71 (82%)
 Frame = +3

Query: 339 MTGAEIREAFLSFYESKGHTRLPSSSLVPEDPTVLLTIAGMLQFKPVFLGQAPRKVATAT 518
           +TG +IR+ FL FY +KGHT LPS+SL+P+DPTVLLTIAGML FKP+FLGQ   KV  AT
Sbjct: 4   LTGDQIRQKFLDFYAAKGHTILPSASLIPDDPTVLLTIAGMLPFKPIFLGQEAPKVPRAT 63

Query: 519 TTQKCVRTNDI 551
           T QKC+RTNDI
Sbjct: 64  TAQKCLRTNDI 74



EST assemble image


clone accession position
1 HCL046f12_r AV642164 1 384
2 MXL002d07_r BP093030 180 552




Chlamydomonas reinhardtii
Kazusa DNA Research Institute