KCC002496A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002496A_C01 KCC002496A_c01
ttataagcacgttagcatacaGTATCCACAGTACTCAGCCCAGGGCCTCGTGCAGGGTTT
AGAAGCTTTCTGTCTTCATTCGGCAGTTTTACATCTTCGGATGCACCTGCAGTGCTCTCG
GACACAGATTCAGGGTTATATGACTATCGCAAGCTGAGGAATGTCCCAGAGCCAGAAGCG
GGGCGCTGCCGACGATATCGACGAGCTGCGCCTGGAGGACAAGATTCGTCACCACCTGAC
GAGCTCGGGCAAGCGGGAAGACCTGAAGGAGCTGCTCGCTGCGCGGCTGGCAGCGTGTGG
CTGGCGTGACGATATTAAGCAGCGCTGCAGGGAGTACGTGGCGCGCAAGGGCCGCGAGGC
AGTCACCACCGAGGACATCGTGAGGGCGGTCCGACCCGAGGGCCGCGCGCGTGTGCCCGA
CAGCGTCAAGGCCGAGCTGCTGGCCGAGATTAAGAAGTTCATCCTAAGCATCTGAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002496A_C01 KCC002496A_c01
         (476 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_189346.2| expressed protein [Arabidopsis thaliana] gi|372...    97  1e-19
ref|XP_216913.2| similar to DC6 protein [Rattus norvegicus]            89  3e-17
ref|NP_064574.1| DC6 protein [Homo sapiens] gi|20902055|ref|XP_1...    89  3e-17
ref|XP_194633.1| RIKEN cDNA 1810057B09 [Mus musculus]                  79  3e-14
ref|NP_524846.1| enhancer of yellow 2 CG15191-PA [Drosophila mel...    68  5e-11

>ref|NP_189346.2| expressed protein [Arabidopsis thaliana] gi|37202032|gb|AAQ89631.1|
           At3g27100 [Arabidopsis thaliana]
          Length = 115

 Score = 96.7 bits (239), Expect = 1e-19
 Identities = 44/90 (48%), Positives = 66/90 (72%)
 Frame = +2

Query: 200 DELRLEDKIRHHLTSSGKREDLKELLAARLAACGWRDDIKQRCREYVARKGREAVTTEDI 379
           D++ L + I   L  SG++E+L EL+  RL  CGW+D+++  CRE+V +KGR+ VT +++
Sbjct: 23  DKVTLREIINVKLVESGEKENLMELVRDRLVECGWKDEMRIACREHVKKKGRKDVTVDEL 82

Query: 380 VRAVRPEGRARVPDSVKAELLAEIKKFILS 469
           +R + P+GRA VPDSVKAELL  I+ FI+S
Sbjct: 83  IRVITPKGRASVPDSVKAELLNRIQNFIVS 112

>ref|XP_216913.2| similar to DC6 protein [Rattus norvegicus]
          Length = 105

 Score = 89.0 bits (219), Expect = 3e-17
 Identities = 41/87 (47%), Positives = 57/87 (65%)
 Frame = +2

Query: 203 ELRLEDKIRHHLTSSGKREDLKELLAARLAACGWRDDIKQRCREYVARKGREAVTTEDIV 382
           + ++   I   L  +G+RE LKELL A+L  CGW+D +K  C+E +  KG E VT +D+V
Sbjct: 13  DAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLV 72

Query: 383 RAVRPEGRARVPDSVKAELLAEIKKFI 463
             + P+GRA VPDSVK ELL  I+ F+
Sbjct: 73  AEITPKGRALVPDSVKKELLQRIRTFL 99

>ref|NP_064574.1| DC6 protein [Homo sapiens] gi|20902055|ref|XP_128091.1|
           hypothetical protein 6720481I12 [Mus musculus]
           gi|30023855|ref|NP_778174.1| DC6 protein; e(y)2 homolog;
           enhancer of yellow eye homolog (Drosophila) [Mus
           musculus] gi|9295184|gb|AAF86876.1|AF201940_1 DC6 [Homo
           sapiens] gi|9622517|gb|AAF89829.1|AF173296_1 e(y)2
           homolog [Homo sapiens]
           gi|9622519|gb|AAF89830.1|AF173297_1 e(y)2 homolog [Mus
           musculus] gi|14043847|gb|AAH07870.1| DC6 protein [Homo
           sapiens] gi|26328717|dbj|BAC28097.1| unnamed protein
           product [Mus musculus] gi|29387078|gb|AAH48361.1| DC6
           protein [Mus musculus]
          Length = 101

 Score = 89.0 bits (219), Expect = 3e-17
 Identities = 41/87 (47%), Positives = 57/87 (65%)
 Frame = +2

Query: 203 ELRLEDKIRHHLTSSGKREDLKELLAARLAACGWRDDIKQRCREYVARKGREAVTTEDIV 382
           + ++   I   L  +G+RE LKELL A+L  CGW+D +K  C+E +  KG E VT +D+V
Sbjct: 9   DAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLV 68

Query: 383 RAVRPEGRARVPDSVKAELLAEIKKFI 463
             + P+GRA VPDSVK ELL  I+ F+
Sbjct: 69  AEITPKGRALVPDSVKKELLQRIRTFL 95

>ref|XP_194633.1| RIKEN cDNA 1810057B09 [Mus musculus]
          Length = 96

 Score = 79.0 bits (193), Expect = 3e-14
 Identities = 37/87 (42%), Positives = 55/87 (62%)
 Frame = +2

Query: 203 ELRLEDKIRHHLTSSGKREDLKELLAARLAACGWRDDIKQRCREYVARKGREAVTTEDIV 382
           + ++   I   L  +G++E LKELL A+L  C W+D +K+  +E +  KG E VT +D+V
Sbjct: 4   DAQMRAAINQKLIETGEKERLKELLRAKLIECSWKDQLKEHGKEVIKEKGLEHVTVDDLV 63

Query: 383 RAVRPEGRARVPDSVKAELLAEIKKFI 463
             +  +GRA VPDSVK ELL  I+ F+
Sbjct: 64  AEITSKGRALVPDSVKKELLQRIRTFL 90

>ref|NP_524846.1| enhancer of yellow 2 CG15191-PA [Drosophila melanogaster]
           gi|7292664|gb|AAF48062.1| CG15191-PA [Drosophila
           melanogaster] gi|9622466|gb|AAF89805.1|AF173294_1
           enhancer of yellow 2 transcription factor [Drosophila
           melanogaster] gi|9622468|gb|AAF89806.1|AF173295_1
           enhancer of yellow 2 transcription factor [Drosophila
           melanogaster]
          Length = 101

 Score = 68.2 bits (165), Expect = 5e-11
 Identities = 31/77 (40%), Positives = 47/77 (60%), Gaps = 1/77 (1%)
 Frame = +2

Query: 245 SGKREDLKELLAARLAACGWRDDIKQRCREYVARKG-REAVTTEDIVRAVRPEGRARVPD 421
           +G R  +K+LL +RL  CGWRD+++  CR  +  KG   + T E ++  V P+ R  VPD
Sbjct: 14  TGDRSKIKDLLCSRLTECGWRDEVRLMCRNILMEKGTNNSFTVEQLIAEVTPKARTLVPD 73

Query: 422 SVKAELLAEIKKFILSI 472
           +VK ELL +I+  +  I
Sbjct: 74  AVKKELLMKIRTILTEI 90



EST assemble image


clone accession position
1 HCL065c10_r AV643190 1 476
2 HCL046c06_r AV642139 21 128




Chlamydomonas reinhardtii
Kazusa DNA Research Institute