KCC002491A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002491A_C01 KCC002491A_c01
GGAAACCGGCATACAGTACATGGTGTGATCTCTATTTTTTTACACAGCTGCAATATGGTG
TTGAAGTCCGCTCCGCAGCATGCTCGCGTCCACCATGGCAGCCAGGCGCGGTCTAGTAGA
GTTATCCCCGTAAATATTACGCTACATGCTACAAGCACAACATACAAGGCCAGGCTAGGC
CATAGCGCCAGAGTGCAAACCTGGCCGAGGCATGCGCTGCGAGTGCGAGCTGACAGCGCC
CCCGCTCCAACCTTCACGAAGCAGGATGCTAAGGCCGCAGAGATGCTCAACTTCAAGAGA
GAATTTGACCTTCCCGAGGGGCGTGTGGTCATCCAACCACTGACAGTGCCCTACATTGAG
CAGACATCAGAGCTGCTGGCGACAAGCTTCGTGACGGCGGTGTCCTACCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002491A_C01 KCC002491A_c01
         (410 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00011238.1| COG2217: Cation transport ATPase [Rhodopseudo...    35  0.25
ref|ZP_00008109.1| COG0204: 1-acyl-sn-glycerol-3-phosphate acylt...    35  0.32
ref|NP_502793.1| sec61 (52.2 kD) (4P588) [Caenorhabditis elegans...    33  0.72
ref|XP_032278.4| similar to KIAA0545 protein [Homo sapiens]            33  0.94
gb|AAH36863.1| Similar to KIAA0440 protein [Homo sapiens]              33  0.94

>ref|ZP_00011238.1| COG2217: Cation transport ATPase [Rhodopseudomonas palustris]
          Length = 992

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 27/98 (27%), Positives = 38/98 (38%)
 Frame = +1

Query: 70  APQHARVHHGSQARSSRVIPVNITLHATSTTYKARLGHSARVQTWPRHALRVRADSAPAP 249
           A  HA  HHG+ A   +VI     +     T K R  +      + R A + +  + P  
Sbjct: 215 ADDHADHHHGAAADGGKVIDPVCGMKVDPATSKHRFAYKGTTYHFCREACQTKFAADPVS 274

Query: 250 TFTKQDAKAAEMLNFKREFDLPEGRVVIQPLTVPYIEQ 363
              K  AK A         D+PEG +   P+  P I Q
Sbjct: 275 YLDKSKAKPAA--------DVPEGTIYTCPMD-PQIRQ 303

>ref|ZP_00008109.1| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase
           [Rhodobacter sphaeroides]
          Length = 241

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 176 SLALYVVLVACSVIFTGITLLDRAWLPWWTR 84
           ++ +YV ++A ++ FT + L+DR W P W R
Sbjct: 14  NIVMYVSMIAIALAFTPLVLVDRKWAPVWMR 44

>ref|NP_502793.1| sec61 (52.2 kD) (4P588) [Caenorhabditis elegans]
           gi|7510283|pir||T27227 hypothetical protein Y57G11C.15 -
           Caenorhabditis elegans gi|3881191|emb|CAB16516.1|
           Hypothetical protein Y57G11C.15 [Caenorhabditis elegans]
          Length = 473

 Score = 33.5 bits (75), Expect = 0.72
 Identities = 15/47 (31%), Positives = 25/47 (52%)
 Frame = -1

Query: 185 LWPSLALYVVLVACSVIFTGITLLDRAWLPWWTRACCGADFNTILQL 45
           LW ++ L+V LV C +   GI   D A   +W R    ++  T+++L
Sbjct: 33  LWTAITLFVFLVCCQIPLFGIMSTDSADPFYWLRVIMASNRGTLMEL 79

>ref|XP_032278.4| similar to KIAA0545 protein [Homo sapiens]
          Length = 1781

 Score = 33.1 bits (74), Expect = 0.94
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = +1

Query: 70  APQHARVHHGSQARSSRVIPVNITLHATSTTYKA-------RLGHSARVQTWPRHALRVR 228
           AP      +GS ++     P   T  AT+TT  +       ++G  ARV  WP     +R
Sbjct: 35  APLGFWAQNGSMSQPLGESPATATATATATTRPSPTTPAMPKMGVRARVADWPPKREALR 94

Query: 229 ADSAPAPTFTKQDAKAAEMLNFKR 300
             S P+P+      KA +M +  R
Sbjct: 95  EHSNPSPSQDTDGTKATKMAHSMR 118

>gb|AAH36863.1| Similar to KIAA0440 protein [Homo sapiens]
          Length = 353

 Score = 33.1 bits (74), Expect = 0.94
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = +1

Query: 70  APQHARVHHGSQARSSRVIPVNITLHATSTTYKA-------RLGHSARVQTWPRHALRVR 228
           AP      +GS ++     P   T  AT+TT  +       ++G  ARV  WP     +R
Sbjct: 35  APLGFWAQNGSMSQPLGESPATATATATATTRPSPTTPAMPKMGVRARVADWPPKREALR 94

Query: 229 ADSAPAPTFTKQDAKAAEMLNFKR 300
             S P+P+      KA +M +  R
Sbjct: 95  EHSNPSPSQDTDGTKATKMAHSMR 118



EST assemble image


clone accession position
1 HCL045e04_r AV642093 1 243
2 LCL084e08_r AV630806 1 410




Chlamydomonas reinhardtii
Kazusa DNA Research Institute