KCC002487A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002487A_C01 KCC002487A_c01
gccaactcttttCCACGCTGCTCGGTGTGGAAATTTCGGCCAGAGACACGACTAGACGAA
ACCCTACGCGCACGCAGTCATTAGTTCGAGTTACATGAATGCAAGGCCGATTGTCGCCGC
CGATTGTCGCCTATCTAATTTGGGCTATCGGTCCGCCACTGCTTTCGTAGATTTTCGCAG
CGAAGAGCCCTCTTGCGGCCGTATCTGTATCCGCGTAATGCTCCACTGCAACGAGTGACG
CGATGGAGCTTTGTTGCTATGCGTGAGCGCCCACTCCCACGCAAGTCAACCCCGCCGTGC
GCGGTGTGGAGTTTTACCAGCTTTCGCAAATTGACAATCTTAAGCGTAATCGTGGTATTG
AATTCCAGACTAGGCACCGACTGCGTTGCAGCTACTGCGGCCGGTGGCGAACGAGCGCTT
CTGCACGCGCTGCAGCACGGGCTCTATCATAGCTCGAATGCGACGCATGTAGATGAGCTC
ATCACCTCATTGGAGAAGGTCATATGGCACTCCAGGCGCATCCTCAAAAGCGGCAACTTT
CAGGAGCATCATGTCGCGCACACGAAATTGGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002487A_C01 KCC002487A_c01
         (573 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_586318.1| hypothetical protein [Encephalitozoon cuniculi]...    34  1.2
gb|AAK61311.1|AF295359_2 methyltransferase Ada [Paracoccus panto...    33  2.8
gb|AAM63023.1| dolichyl-di-phosphooligosaccharide-protein glycot...    33  2.8
gb|AAH51810.2| Tumor necrosis factor receptor superfamily, membe...    33  2.8
gb|AAM13981.1| hypothetical aat-like aminotransferase [Pseudomon...    33  3.6

>ref|NP_586318.1| hypothetical protein [Encephalitozoon cuniculi]
           gi|19173701|ref|NP_597504.1| hypothetical protein
           [Encephalitozoon cuniculi] gi|19069537|emb|CAD25922.1|
           hypothetical protein [Encephalitozoon cuniculi]
           gi|19170907|emb|CAD26681.1| hypothetical protein
           [Encephalitozoon cuniculi]
          Length = 266

 Score = 34.3 bits (77), Expect = 1.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 256 AMRERPLPRKSTPPCAVWSFTSFRKLTILSVIV 354
           + +ER LPRKS+PP A W    F  + +L++ V
Sbjct: 212 SFKERLLPRKSSPPAAAWRVAVFLLILVLTISV 244

>gb|AAK61311.1|AF295359_2 methyltransferase Ada [Paracoccus pantotrophus]
          Length = 367

 Score = 33.1 bits (74), Expect = 2.8
 Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -2

Query: 260 IATKLHRVTRCSGALRGYRYG--RKRAL 183
           +A   HRV R  GAL GYR+G  RKRAL
Sbjct: 328 VAIPCHRVVRSDGALSGYRWGVARKRAL 355

>gb|AAM63023.1| dolichyl-di-phosphooligosaccharide-protein glycotransferase
           (oligosaccharyltransferase)-like [Arabidopsis thaliana]
          Length = 437

 Score = 33.1 bits (74), Expect = 2.8
 Identities = 30/123 (24%), Positives = 53/123 (42%), Gaps = 3/123 (2%)
 Frame = +1

Query: 205 LYPRNAPLQRVTRWSFVAMRERPLPRKSTPPCAVWSFTSFRKLTILSVIVVLNSRLGTDC 384
           L P N  + +V   S  A    P  + S+PP    S         +S++ V+ +R     
Sbjct: 191 LNPTNNLVLKVLSASPSAYSANPSSKLSSPPQLTGSS--------ISLVSVMQARNNARV 242

Query: 385 VAATAAG--GERALLHALQH-GLYHSSNATHVDELITSLEKVIWHSRRILKSGNFQEHHV 555
           V + +     +R +   +Q  G+ +    +  ++ +T L K ++H R  LK+GN   H V
Sbjct: 243 VISGSVQLFSDRLIRSGVQKAGIPNQYEKSGNEQFVTELSKWVFHERGHLKAGNLVHHRV 302

Query: 556 AHT 564
             T
Sbjct: 303 GET 305

>gb|AAH51810.2| Tumor necrosis factor receptor superfamily, member 19-like,
           precursor [Homo sapiens]
          Length = 430

 Score = 33.1 bits (74), Expect = 2.8
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -2

Query: 440 PCCSACRSARSP-----PAAVAATQSVPSLEFNTTITLKI 336
           PCCS C   + P     P AVAAT  VPSL  N T   K+
Sbjct: 293 PCCSRCSQKKWPEVLLSPEAVAATTPVPSLLPNPTRVPKV 332

>gb|AAM13981.1| hypothetical aat-like aminotransferase [Pseudomonas syringae]
          Length = 397

 Score = 32.7 bits (73), Expect = 3.6
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +1

Query: 253 VAMRERPLPRKSTPPCAVWSFTSFRKLTILSVIVVLNSRLGTDCVAATAAGGERALLHAL 432
           +A+   P  +++   C   + T  R   + + +VVL +      VAAT A G RAL + L
Sbjct: 86  IAIEPTPGTKQAVATCIALAVTRARARGVATPVVVLPNPFYPTYVAATDAAGARALFYDL 145

Query: 433 QHGLYHSSNATHV 471
            +G   ++ A  +
Sbjct: 146 SNGQLEANLAVQL 158



EST assemble image


clone accession position
1 LCL078e08_r AV630415 1 461
2 LCL010a02_r AV626484 13 494
3 HCL044h02_r AV642060 13 573
4 LCL047b02_r AV628786 23 431




Chlamydomonas reinhardtii
Kazusa DNA Research Institute