KCC002485A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002485A_C01 KCC002485A_c01
CTATCCAACAGTATTAAAAGTGGCTCCAACATTGCGAGGCTTCTGCCAGCCTGCACTACT
GCAATGGGGCATCAGGCCCAGGCATCGACACCTGTCCTCTAAAGCCCGCACCCGCGTCAG
CGCAAGGGGTTTCAGCCACTGAAATGCGTACCCCAGCGAAAGGTACCTACCATGGTGAAC
ACCGGAGTCGGCTCGCGGTGCAACTATTTAAGCCGTATATCGCAACTTGTATTTATTTAT
TCCCTTGTCCGCCCTTCTACCTTCGCAGCCACCTTGTCTCCAGCAGCAGCATCCCTGCAA
TCGTCCAACCTTCGGCAAAGTGGAACTGCGTGTCCCAGAAGCCTTCGGCCGGGGCATTGC
CTCCATCCTCTGTCCACCAAGGGGCCCACATCCGGCGCCCGCCATCTGCGAACTTCACTC
ttgcatacctcgcatcaaacccatcactccactcctgtcttcaagtcttcacgacaatcg
cacacacacacaatgccaag


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002485A_C01 KCC002485A_c01
         (500 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00032580.1| COG0204: 1-acyl-sn-glycerol-3-phosphate acylt...    36  0.30
gb|AAA29499.1| merozoite surface protein-1                             35  0.40
ref|NP_728385.1| CG32514-PB [Drosophila melanogaster] gi|2283263...    34  1.2
ref|NP_436392.1| probable nitrilotriacetate monooxygenase compon...    33  1.5
ref|NP_502145.1| mucin-like peritrophin (4M141) [Caenorhabditis ...    33  2.0

>ref|ZP_00032580.1| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase
           [Burkholderia fungorum]
          Length = 364

 Score = 35.8 bits (81), Expect = 0.30
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = +1

Query: 34  ARLLPACTTAMGHQAQASTPVL*SPHPRQRKGFQPLK--CVPQRKVPTMVNTGVG--SRC 201
           AR +PA +TA   QA        S  PR R+     K  C+P  KVPT V  GVG  +R 
Sbjct: 54  ARAMPAASTAPARQA--------SSRPRARRSCTAWKPACLPPGKVPTPVGIGVGMTARL 105

Query: 202 NYLSRI--SQLVFIYSLVRPSTFAATLSPAA 288
           +Y  R   + + F+   V    F+  + P A
Sbjct: 106 DYCWRFYATGMAFVVFGVCGVLFSVVVFPLA 136

>gb|AAA29499.1| merozoite surface protein-1
          Length = 1766

 Score = 35.4 bits (80), Expect = 0.40
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 36   EASASLHYCNGASGPGIDTCPLKPAPASAQGVSATEMRTPAKG-TYHGEHRSRLAVQ 203
            EA A+     GAS P  +T P  PAPA AQ V++    T   G + +GE  ++++ +
Sbjct: 1004 EAPAAQKAQEGASAPSAETVPAAPAPAPAQPVTSQPASTQVSGQSTNGEGNTKVSAE 1060

>ref|NP_728385.1| CG32514-PB [Drosophila melanogaster] gi|22832635|gb|AAF50853.2|
           CG32514-PB [Drosophila melanogaster]
          Length = 447

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 6/54 (11%)
 Frame = +1

Query: 304 SNLRQSGTACPRSLRPGHCLHPLSTKG------PTSGARHLRTSLLHTSHQTHH 447
           +N+R +   C  + RP   +H L+T        P+  A+H +  LLH   Q HH
Sbjct: 26  NNIRPANVICNTTERPPIAIHQLTTSASIEHSHPSQQAQHQQQQLLHHQQQHHH 79

>ref|NP_436392.1| probable nitrilotriacetate monooxygenase component A [Sinorhizobium
           meliloti] gi|25285757|pir||B95405 probable
           nitrilotriacetate monooxygenase component A (EC
           1.14.13.-) [imported] - Sinorhizobium meliloti (strain
           1021) magaplasmid pSymA gi|14524306|gb|AAK65804.1|
           probable nitrilotriacetate monooxygenase component A
           [Sinorhizobium meliloti]
          Length = 433

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 6/54 (11%)
 Frame = -2

Query: 430 RYARV-KFADGGRRMWAPWWTEDGGNAPAEGFWDTQF-----HFAEGWTIAGML 287
           RYA+  +F D  +++WA W     G+ P E FWD        H  + +T+ G L
Sbjct: 146 RYAKASEFLDVAKKLWASWDPAREGHVPDERFWDAGSAHAIDHEGDHFTVKGPL 199

>ref|NP_502145.1| mucin-like peritrophin (4M141) [Caenorhabditis elegans]
            gi|7504826|pir||T23024 hypothetical protein H02I12.1 -
            Caenorhabditis elegans gi|3877979|emb|CAB07215.1|
            Hypothetical protein H02I12.1 [Caenorhabditis elegans]
          Length = 1332

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 27/94 (28%), Positives = 40/94 (41%), Gaps = 1/94 (1%)
 Frame = +1

Query: 43   LPACTTAMGHQAQASTPVL*SPHPRQRKGFQPLKCVPQRKVPTMVNTGVGSRCNYL-SRI 219
            +P C    G Q   S+PV+ +P   Q   +     +P   VP+   T VG RC Y+ S +
Sbjct: 753  VPEC----GSQGSTSSPVITTPGQDQSSNYYG---IPSDDVPSTTQTPVGDRCAYVASGL 805

Query: 220  SQLVFIYSLVRPSTFAATLSPAAASLQSSNLRQS 321
              L      ++ S  AA++     SL      QS
Sbjct: 806  FDLGCSQKYIQCSDSAASVRECEGSLYFDERSQS 839



EST assemble image


clone accession position
1 MXL075e09_r BP097427 1 463
2 HCL044c06_r AV642034 151 394
3 MXL003g12_r BP093129 319 648




Chlamydomonas reinhardtii
Kazusa DNA Research Institute