KCC002482A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002482A_C01 KCC002482A_c01
catgccgacaccacccatgatgccgaacggcatgtttccgcagcagcagccgcaacaggc
aatgaggctgaacgcaaacgGCCTCGGGGGCCAGAAGCGGCCACACGAGATGATGGGCAT
GAGCAGCGGCGGCATGGATGGCATGAACCAGATGGTGCCGGTGGGTGGCGGCGGCATGGG
CATGTCCATGCCCATGGGAATGAACAATCCCATGCAGGGCGGTATGCCGCTGCAGCCGCC
GCCACAGGTGCAGGCGCCGGGCCAGGGCCCCATGATGTCGGCGCCGCAGCAGCAGCAACA
GCAGCCGGCACCCAAGCGTGCGAAGACGGACGACGTACTGCGGCAGAACACGGGAACGTC
GCTACTGGAGACCTTCGACGCGAAGCAAATTCGCGTACACGTTGACCTCATTCGCGCGGC
GGCGGTGACGCAGAAGGCACAACAGCCGCCGCCGGCGAACCCGGACGATGCCTGCAAGGT
GTGCGCGCTGACGAAGCTGTCGTTCGAGCCGCCCGTGATCTACTGCTCGTCATGCGGCCT
GCGCATCAAGCGCGGACAGATCTTCTACAGCACGCCGCCGGACCACGGCAACGACCTGAA
GGGCTACTTCTGCCACCAGTGCTTCACAGACCAAAAGGGCGAGCGCATCTTGGTGGAGGG
CGTGTCCATCAAGAAATCCGACCTGGTGAAACGGAAAAACGACGAGGAGATCGAGGAGGG
CTGGGTGCAGTGCGACCACTGCGAGGGCTGGGTGCACCAGATCTGCGGCATGTTCAACAA
GGGCCGCAACAACACCGACGTGCACTACCTGTGTCCGGACTGCCTGGCGGTGGGCTACGA
GCGGGGCCAGCGGCAAAAAACGGAGGTGCGGCCGCAAGCCATGCTCGAAGCCAAGGACTT
GCCGACCAGTCGGCTCAGCGAGTTCATCACGGAGCGGCTCAACC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002482A_C01 KCC002482A_c01
         (944 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_173115.1| expressed protein [Arabidopsis thaliana]             172  6e-42
pir||E86302 hypothetical protein F17F16.8 [imported] - Arabidops...   172  6e-42
ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [A...   166  5e-40
pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thali...   166  5e-40
ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thal...   152  8e-36

>ref|NP_173115.1| expressed protein [Arabidopsis thaliana]
          Length = 1706

 Score =  172 bits (437), Expect = 6e-42
 Identities = 92/244 (37%), Positives = 138/244 (55%), Gaps = 6/244 (2%)
 Frame = +2

Query: 227  PLQPPPQVQAPGQGPMMSAPQQQQQQPAPKRAKTDDVLRQNTGTSLLETFDAKQIRVHVD 406
            P  P  +   P +  ++ +P+   +   PK            G SL E F  +Q+R H+ 
Sbjct: 881  PGWPKKEPGCPKKEELVESPELTSKSRKPKIK----------GVSLTELFTPEQVREHIR 930

Query: 407  LIR-----AAAVTQKAQQPPPANPDDACKVCALTKLSFEPPVIYCSSCGLRIKRGQIFYS 571
             +R     + A  +K Q    +  +++C++CA+ KL+FEPP IYC+ CG RIKR  ++Y+
Sbjct: 931  GLRQWVGQSKAKAEKNQAMENSMSENSCQLCAVEKLTFEPPPIYCTPCGARIKRNAMYYT 990

Query: 572  TPPDHGNDLKGYFCHQCFTDQKGERILVEGVSIKKSDLVKRKNDEEIEEGWVQCDHCEGW 751
                 G + + YFC  C+ + +G+ IL EG S+ K+ L K+KNDEEIEE WVQCD C+ W
Sbjct: 991  VG---GGETRHYFCIPCYNESRGDTILAEGTSMPKAKLEKKKNDEEIEESWVQCDKCQAW 1047

Query: 752  VHQICGMFNKGRNN-TDVHYLCPDCLAVGYERGQRQKTEVRPQAMLEAKDLPTSRLSEFI 928
             HQIC +FN  RN+     Y CP C  +  E+ +R+   +   A+L AKDLP + LS+ I
Sbjct: 1048 QHQICALFNGRRNDGGQAEYTCPYCYVIDVEQNERK--PLLQSAVLGAKDLPRTILSDHI 1105

Query: 929  TERL 940
             +RL
Sbjct: 1106 EQRL 1109

>pir||E86302 hypothetical protein F17F16.8 [imported] - Arabidopsis thaliana
            gi|9954734|gb|AAG09087.1|AC026237_8 Unknown Protein
            [Arabidopsis thaliana]
          Length = 1498

 Score =  172 bits (437), Expect = 6e-42
 Identities = 92/244 (37%), Positives = 138/244 (55%), Gaps = 6/244 (2%)
 Frame = +2

Query: 227  PLQPPPQVQAPGQGPMMSAPQQQQQQPAPKRAKTDDVLRQNTGTSLLETFDAKQIRVHVD 406
            P  P  +   P +  ++ +P+   +   PK            G SL E F  +Q+R H+ 
Sbjct: 673  PGWPKKEPGCPKKEELVESPELTSKSRKPKIK----------GVSLTELFTPEQVREHIR 722

Query: 407  LIR-----AAAVTQKAQQPPPANPDDACKVCALTKLSFEPPVIYCSSCGLRIKRGQIFYS 571
             +R     + A  +K Q    +  +++C++CA+ KL+FEPP IYC+ CG RIKR  ++Y+
Sbjct: 723  GLRQWVGQSKAKAEKNQAMENSMSENSCQLCAVEKLTFEPPPIYCTPCGARIKRNAMYYT 782

Query: 572  TPPDHGNDLKGYFCHQCFTDQKGERILVEGVSIKKSDLVKRKNDEEIEEGWVQCDHCEGW 751
                 G + + YFC  C+ + +G+ IL EG S+ K+ L K+KNDEEIEE WVQCD C+ W
Sbjct: 783  VG---GGETRHYFCIPCYNESRGDTILAEGTSMPKAKLEKKKNDEEIEESWVQCDKCQAW 839

Query: 752  VHQICGMFNKGRNN-TDVHYLCPDCLAVGYERGQRQKTEVRPQAMLEAKDLPTSRLSEFI 928
             HQIC +FN  RN+     Y CP C  +  E+ +R+   +   A+L AKDLP + LS+ I
Sbjct: 840  QHQICALFNGRRNDGGQAEYTCPYCYVIDVEQNERK--PLLQSAVLGAKDLPRTILSDHI 897

Query: 929  TERL 940
             +RL
Sbjct: 898  EQRL 901

>ref|NP_565197.1| p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana]
            gi|12597461|gb|AAG60059.1| p300/CBP
            acetyltransferase-related protein 2 [Arabidopsis
            thaliana]
          Length = 1654

 Score =  166 bits (420), Expect = 5e-40
 Identities = 90/252 (35%), Positives = 136/252 (53%), Gaps = 14/252 (5%)
 Frame = +2

Query: 227  PLQPPPQVQAPGQGPMMSAPQQQQQQPAPKRAKTDDVLRQNT--------GTSLLETFDA 382
            P+  P +       PM    + +++  + K+    +     +        G SL E F  
Sbjct: 848  PVSQPDKQDLSDVSPMQETTKVEKEPESLKKENLAESTEHTSKSGKPEIKGVSLTELFTP 907

Query: 383  KQIRVHVDLIR-----AAAVTQKAQQPPPANPDDACKVCALTKLSFEPPVIYCSSCGLRI 547
            +Q+R H+  +R     + A  +K Q    +  +++C++CA+ KL+FEPP IYC+ CG RI
Sbjct: 908  EQVREHIRGLRQWVGQSKAKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTPCGARI 967

Query: 548  KRGQIFYSTPPDHGNDLKGYFCHQCFTDQKGERILVEGVSIKKSDLVKRKNDEEIEEGWV 727
            KR  ++Y+       D + YFC  C+ + +G+ IL EG  + K+ L K+KNDEE EE WV
Sbjct: 968  KRNAMYYTVG---AGDTRHYFCIPCYNESRGDTILAEGTPMPKARLEKKKNDEETEEWWV 1024

Query: 728  QCDHCEGWVHQICGMFNKGRNN-TDVHYLCPDCLAVGYERGQRQKTEVRPQAMLEAKDLP 904
            QCD CE W HQIC +FN  RN+     Y CP C     E+ +R+   +   A+L AKDLP
Sbjct: 1025 QCDKCEAWQHQICALFNGRRNDGGQAEYTCPYCFIAEVEQSKRK--PLPQSAVLGAKDLP 1082

Query: 905  TSRLSEFITERL 940
             + LS+ I +RL
Sbjct: 1083 RTILSDHIEQRL 1094

>pir||T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thaliana
            gi|3152587|gb|AAC17068.1| Similar to CREB-binding protein
            homolog gb|U88570 from D. melanogaster and contains
            similarity to callus-associated protein gb|U01961 from
            Nicotiana tabacum.  EST gb|W43427 comes from this gene.
            [Arabidopsis thaliana]
          Length = 1516

 Score =  166 bits (420), Expect = 5e-40
 Identities = 90/252 (35%), Positives = 136/252 (53%), Gaps = 14/252 (5%)
 Frame = +2

Query: 227  PLQPPPQVQAPGQGPMMSAPQQQQQQPAPKRAKTDDVLRQNT--------GTSLLETFDA 382
            P+  P +       PM    + +++  + K+    +     +        G SL E F  
Sbjct: 734  PVSQPDKQDLSDVSPMQETTKVEKEPESLKKENLAESTEHTSKSGKPEIKGVSLTELFTP 793

Query: 383  KQIRVHVDLIR-----AAAVTQKAQQPPPANPDDACKVCALTKLSFEPPVIYCSSCGLRI 547
            +Q+R H+  +R     + A  +K Q    +  +++C++CA+ KL+FEPP IYC+ CG RI
Sbjct: 794  EQVREHIRGLRQWVGQSKAKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTPCGARI 853

Query: 548  KRGQIFYSTPPDHGNDLKGYFCHQCFTDQKGERILVEGVSIKKSDLVKRKNDEEIEEGWV 727
            KR  ++Y+       D + YFC  C+ + +G+ IL EG  + K+ L K+KNDEE EE WV
Sbjct: 854  KRNAMYYTVG---AGDTRHYFCIPCYNESRGDTILAEGTPMPKARLEKKKNDEETEEWWV 910

Query: 728  QCDHCEGWVHQICGMFNKGRNN-TDVHYLCPDCLAVGYERGQRQKTEVRPQAMLEAKDLP 904
            QCD CE W HQIC +FN  RN+     Y CP C     E+ +R+   +   A+L AKDLP
Sbjct: 911  QCDKCEAWQHQICALFNGRRNDGGQAEYTCPYCFIAEVEQSKRK--PLPQSAVLGAKDLP 968

Query: 905  TSRLSEFITERL 940
             + LS+ I +RL
Sbjct: 969  RTILSDHIEQRL 980

>ref|NP_187904.1| CREB-binding protein -related [Arabidopsis thaliana]
            gi|15795129|dbj|BAB02507.1| CREB-binding protein-like
            [Arabidopsis thaliana]
          Length = 1670

 Score =  152 bits (384), Expect = 8e-36
 Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 15/234 (6%)
 Frame = +2

Query: 284  PQQQQQQPAPKRAKTDDVL----------RQNTGTSLLETFDAKQIRVHVDLIR-----A 418
            P++  +  APK    +  L           +  G SL+E F  +Q+  H+  +R     +
Sbjct: 852  PKRMNEISAPKEENAEQSLGVVSASNCGKSKIKGVSLIELFTPEQVEEHIRGLRQWVGQS 911

Query: 419  AAVTQKAQQPPPANPDDACKVCALTKLSFEPPVIYCSSCGLRIKRGQIFYSTPPDHGNDL 598
                +K +    +  +++C++CA+ +L+FEP  IYC+ CG R+KR  + Y+       + 
Sbjct: 912  KTKAEKNKAMGLSMSENSCQLCAVERLAFEPTPIYCTPCGARVKRNAMHYTVV---AGES 968

Query: 599  KGYFCHQCFTDQKGERILVEGVSIKKSDLVKRKNDEEIEEGWVQCDHCEGWVHQICGMFN 778
            + Y C  C+ + +   + V+G  + KS   K+KNDEE+EE WVQCD C+ W HQIC +FN
Sbjct: 969  RHYVCIPCYNEARANTVSVDGTPVPKSRFEKKKNDEEVEESWVQCDKCQAWQHQICALFN 1028

Query: 779  KGRNNTDVHYLCPDCLAVGYERGQRQKTEVRPQAMLEAKDLPTSRLSEFITERL 940
              RN+    Y CP+C     E+G+R+   V    +L AK LP S LS  + +RL
Sbjct: 1029 GRRNHGQAEYTCPNCYIQEVEQGERK--PVSQNVILGAKSLPASTLSNHLEQRL 1080



EST assemble image


clone accession position
1 LCL095c08_r AV631508 1 491
2 HCL070e03_r AV643487 171 646
3 MXL024c09_r BP094514 299 470
4 MXL029c12_r BP094775 338 825
5 LCL053c12_r AV629158 392 887
6 HCL043h09_r AV642014 417 944
7 HCL065f09_r AV643210 547 781




Chlamydomonas reinhardtii
Kazusa DNA Research Institute