Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002481A_C01 KCC002481A_c01
(489 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173520.1| U5 small nuclear ribonucleoprotein helicase, pu... 244 4e-64
ref|NP_054733.1| U5 snRNP-specific protein, 200-KD [Homo sapiens... 242 2e-63
gb|AAH07577.1|AAH07577 Unknown (protein for IMAGE:3139787) [Homo... 241 3e-63
ref|XP_181389.2| U5 snRNP-specific protein, 200 kDa [Mus musculus] 241 3e-63
dbj|BAA34508.2| KIAA0788 protein [Homo sapiens] 241 3e-63
>ref|NP_173520.1| U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis
thaliana] gi|25518570|pir||E86342 hypothetical protein
F9H16.5 [imported] - Arabidopsis thaliana
gi|4836892|gb|AAD30595.1|AC007369_5 Putative RNA helicase
[Arabidopsis thaliana]
Length = 2171
Score = 244 bits (623), Expect = 4e-64
Identities = 113/162 (69%), Positives = 134/162 (81%)
Frame = +2
Query: 2 PDFAWEDKVHGFVEPFWIFVEDQDSEQTLHYQYWLLKKTAAAAGEEHVVAFTVPITEPVP 181
PDF W++K+H +VEPFWI VED D E+ LH++Y+LLKK E+H + FTVPI EP+P
Sbjct: 1230 PDFLWDEKIHKYVEPFWIIVEDNDGEKILHHEYFLLKKQYI--DEDHTLHFTVPIFEPLP 1287
Query: 182 PQFFIRVVSDRWLGCEATLPVSFRHLILPTKFPPPTELLDLQPLPVSALRNAAFEALYKG 361
PQ+F+RVVSD+WLG E LPVSFRHLILP K+PPPTELLDLQPLPV+ALRN +E LY+
Sbjct: 1288 PQYFVRVVSDKWLGSETVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPNYEILYQD 1347
Query: 362 LATFNPIQTQVFTALYNSDDNALVAAPTGSGKTICAEFAILR 487
FNP+QTQVFT LYN++DN LVAAPTGSGKTICAEFAILR
Sbjct: 1348 FKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILR 1389
Score = 37.7 bits (86), Expect = 0.075
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +2
Query: 353 YKGLATFNPIQTQVF-TALYNSDDNALVAAPTGSGKTICAEFAILR 487
+KG+ N +Q++V+ TAL+ ++ N L+ APTG+GKT A IL+
Sbjct: 499 FKGMQQLNRVQSKVYDTALFKAE-NILLCAPTGAGKTNVAMLTILQ 543
>ref|NP_054733.1| U5 snRNP-specific protein, 200-KD [Homo sapiens]
gi|10436768|dbj|BAB14906.1| unnamed protein product [Homo
sapiens]
Length = 1811
Score = 242 bits (617), Expect = 2e-63
Identities = 117/163 (71%), Positives = 133/163 (80%), Gaps = 1/163 (0%)
Frame = +2
Query: 2 PDFAWEDKVHGFVEPFWIFVEDQDSEQTLHYQYWLLKKTAAAAGEEHVVAFTVPITEPVP 181
PDF W++KVHG E FWI VED DSE LH++Y+LLK A A +EH++ F VP+ EP+P
Sbjct: 881 PDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLK--AKYAQDEHLITFFVPVFEPLP 938
Query: 182 PQFFIRVVSDRWLGCEATLPVSFRHLILPTKFPPPTELLDLQPLPVSALRNAAFEALYKG 361
PQ+FIRVVSDRWL CE LPVSFRHLILP K+PPPTELLDLQPLPVSALRN+AFE+LY+
Sbjct: 939 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYRD 998
Query: 362 -LATFNPIQTQVFTALYNSDDNALVAAPTGSGKTICAEFAILR 487
FNPIQTQVF +YNSDDN V APTGSGKTICAEFAILR
Sbjct: 999 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILR 1041
Score = 47.8 bits (112), Expect = 7e-05
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +2
Query: 266 PTKFPPPTELLDLQPLPVSALRNAAFEALYKGLATFNPIQTQVFTALYNSDDNALVAAPT 445
P F +LL ++ LP A +A ++G T N IQ++++ A +D+N L+ APT
Sbjct: 127 PKPFGSEEQLLPVEKLPKYA------QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPT 180
Query: 446 GSGKTICAEFAILR 487
G+GKT A +LR
Sbjct: 181 GAGKTNVALMCMLR 194
>gb|AAH07577.1|AAH07577 Unknown (protein for IMAGE:3139787) [Homo sapiens]
Length = 1308
Score = 241 bits (616), Expect = 3e-63
Identities = 117/163 (71%), Positives = 133/163 (80%), Gaps = 1/163 (0%)
Frame = +2
Query: 2 PDFAWEDKVHGFVEPFWIFVEDQDSEQTLHYQYWLLKKTAAAAGEEHVVAFTVPITEPVP 181
PDF W++KVHG E FWI VED DSE LH++Y+LLK A A +EH++ F VP+ EP+P
Sbjct: 378 PDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLK--AKYAQDEHLITFFVPVFEPLP 435
Query: 182 PQFFIRVVSDRWLGCEATLPVSFRHLILPTKFPPPTELLDLQPLPVSALRNAAFEALYKG 361
PQ+FIRVVSDRWL CE LPVSFRHLILP K+PPPTELLDLQPLPVSALRN+AFE+LY+
Sbjct: 436 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQD 495
Query: 362 -LATFNPIQTQVFTALYNSDDNALVAAPTGSGKTICAEFAILR 487
FNPIQTQVF +YNSDDN V APTGSGKTICAEFAILR
Sbjct: 496 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILR 538
>ref|XP_181389.2| U5 snRNP-specific protein, 200 kDa [Mus musculus]
Length = 1622
Score = 241 bits (616), Expect = 3e-63
Identities = 117/163 (71%), Positives = 133/163 (80%), Gaps = 1/163 (0%)
Frame = +2
Query: 2 PDFAWEDKVHGFVEPFWIFVEDQDSEQTLHYQYWLLKKTAAAAGEEHVVAFTVPITEPVP 181
PDF W++KVHG E FWI VED DSE LH++Y+LLK A A +EH++ F VP+ EP+P
Sbjct: 692 PDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLK--AKYAQDEHLITFFVPVFEPLP 749
Query: 182 PQFFIRVVSDRWLGCEATLPVSFRHLILPTKFPPPTELLDLQPLPVSALRNAAFEALYKG 361
PQ+FIRVVSDRWL CE LPVSFRHLILP K+PPPTELLDLQPLPVSALRN+AFE+LY+
Sbjct: 750 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQD 809
Query: 362 -LATFNPIQTQVFTALYNSDDNALVAAPTGSGKTICAEFAILR 487
FNPIQTQVF +YNSDDN V APTGSGKTICAEFAILR
Sbjct: 810 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILR 852
>dbj|BAA34508.2| KIAA0788 protein [Homo sapiens]
Length = 2026
Score = 241 bits (616), Expect = 3e-63
Identities = 117/163 (71%), Positives = 133/163 (80%), Gaps = 1/163 (0%)
Frame = +2
Query: 2 PDFAWEDKVHGFVEPFWIFVEDQDSEQTLHYQYWLLKKTAAAAGEEHVVAFTVPITEPVP 181
PDF W++KVHG E FWI VED DSE LH++Y+LLK A A +EH++ F VP+ EP+P
Sbjct: 1096 PDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLK--AKYAQDEHLITFFVPVFEPLP 1153
Query: 182 PQFFIRVVSDRWLGCEATLPVSFRHLILPTKFPPPTELLDLQPLPVSALRNAAFEALYKG 361
PQ+FIRVVSDRWL CE LPVSFRHLILP K+PPPTELLDLQPLPVSALRN+AFE+LY+
Sbjct: 1154 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQD 1213
Query: 362 -LATFNPIQTQVFTALYNSDDNALVAAPTGSGKTICAEFAILR 487
FNPIQTQVF +YNSDDN V APTGSGKTICAEFAILR
Sbjct: 1214 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILR 1256
Score = 47.8 bits (112), Expect = 7e-05
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +2
Query: 266 PTKFPPPTELLDLQPLPVSALRNAAFEALYKGLATFNPIQTQVFTALYNSDDNALVAAPT 445
P F +LL ++ LP A +A ++G T N IQ++++ A +D+N L+ APT
Sbjct: 342 PKPFGSEEQLLPVEKLPKYA------QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPT 395
Query: 446 GSGKTICAEFAILR 487
G+GKT A +LR
Sbjct: 396 GAGKTNVALMCMLR 409
