KCC002478A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002478A_C01 KCC002478A_c01
tgctgttgctaatCTGTCCCGTGGTGAAGCGACTGAACAAGCGGCGAACGCGCCCAACTC
CCACAGCTGCCGTTTCTTTCCAAGCCATAAATACATACTAGCAGCTCAGCGGTTGATACG
TACAGCTACATTTACTCATGCCCGCACCTTTCCCAAGGACCGAATGACCGATGTCGCGGA
CTGGTTCCGCTCGCTGCGCGGGCGCAAAAAGGCGCCCTGCGCGGAAAGTCCCGGACGGAC
TGCGGCAACAGCGGCCCGTGCTTCCATTGATGTGCCGAACCTGAAGGTCACGGTGCACGA
GCTCATAGCTAAATTCGACCGGCTGAAGTTCGTGCGCCGGCAACGCAAGGGGAATGCCGG
CGTTGACGCTGCTGCTGCCGCCAGCAGTGGTGCTGCCAGGCGCGTCGACGGCTTGGCTCA
GGAGCCGCCACCGCCGGGCGATGATGGTGACGTTGATAGTTGGTCGGGTGATCGGGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002478A_C01 KCC002478A_c01
         (478 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_330030.1| hypothetical protein [Neurospora crassa] gi|113...    35  0.34
gb|AAO37488.1| hypothetical protein [Oryza sativa (japonica cult...    35  0.45
emb|CAD27316.1| hypothetical protein [Aspergillus fumigatus]           35  0.45
ref|NP_680435.1| expressed protein [Arabidopsis thaliana] gi|173...    35  0.58
pir||A38160 thdF protein - Escherichia coli (fragment) gi|236585...    35  0.58

>ref|XP_330030.1| hypothetical protein [Neurospora crassa] gi|11359385|pir||T49510
           fibroin-3 related protein [imported] - Neurospora crassa
           gi|28925900|gb|EAA34896.1| hypothetical protein
           [Neurospora crassa]
          Length = 670

 Score = 35.4 bits (80), Expect = 0.34
 Identities = 26/75 (34%), Positives = 34/75 (44%), Gaps = 10/75 (13%)
 Frame = +2

Query: 278 NLKVTVHELIAKFDRLKFVRRQRKGNAGVDAAAAA--SSGAARRVDGLA--------QEP 427
           N KV V E   + D+LK    +   +AG DAAA A   SGAA  +  +A          P
Sbjct: 186 NKKVMVEEEAVELDQLKKPEEKTAQSAGADAAAGAVVMSGAAATIPAVAPGRGTTPRPSP 245

Query: 428 PPPGDDGDVDSWSGD 472
           PP G  G     +G+
Sbjct: 246 PPGGQQGPYGGPAGN 260

>gb|AAO37488.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 302

 Score = 35.0 bits (79), Expect = 0.45
 Identities = 47/162 (29%), Positives = 65/162 (40%), Gaps = 8/162 (4%)
 Frame = +2

Query: 17  SRGEATEQAANAPNSHSCRFFPSHKYILAAQRLIRTATFTHARTFPKDRMTDVADWFRSL 196
           SRGE+   AA + ++       SH+      R+        +RT  + R+T       + 
Sbjct: 43  SRGESGAHAAASRSTVDPAHPGSHRPAPWVPRV--------SRTQGRGRLTAGPHAAATR 94

Query: 197 RGRKKAPCAESPGRTAATAARASIDVPNLKVTVHELIAKFDRLKFVRRQRKGNAGV---- 364
           RGR++A C    GR     AR S           E   K +R    RRQ   + G     
Sbjct: 95  RGRREAACPRPDGRRRRPPARRS--------GGREREGKGER----RRQSTAHPGATAAT 142

Query: 365 -DAAAAASSGAARRVDGL--AQEPPPPGD-DGDVDSWSGDRA 478
            +AA A   G A RVDG+      P  GD +G+VD    D A
Sbjct: 143 EEAAGAEGGGGAARVDGVDGVDGVPAVGDRNGEVDEVGEDAA 184

>emb|CAD27316.1| hypothetical protein [Aspergillus fumigatus]
          Length = 588

 Score = 35.0 bits (79), Expect = 0.45
 Identities = 26/91 (28%), Positives = 38/91 (41%)
 Frame = -2

Query: 438 PGGGGS*AKPSTRLAAPLLAAAAASTPAFPLRCRRTNFSRSNLAMSSCTVTFRFGTSMEA 259
           P G    +KP++R A P  A +A + P  P+  +            S T   +  TS  A
Sbjct: 243 PVGDRQTSKPASRNATPAPAPSAQNPPPLPVESK-----------PSVTEAVKASTSQSA 291

Query: 258 RAAVAAVRPGLSAQGAFLRPRSERNQSATSV 166
           +AA     PG  ++     P+  R QSA  V
Sbjct: 292 QAAALGAGPGTPSKVPPTGPKGSRAQSAIPV 322

>ref|NP_680435.1| expressed protein [Arabidopsis thaliana] gi|17380702|gb|AAL36181.1|
           unknown protein [Arabidopsis thaliana]
           gi|20465573|gb|AAM20269.1| unknown protein [Arabidopsis
           thaliana]
          Length = 132

 Score = 34.7 bits (78), Expect = 0.58
 Identities = 22/68 (32%), Positives = 34/68 (49%)
 Frame = +2

Query: 197 RGRKKAPCAESPGRTAATAARASIDVPNLKVTVHELIAKFDRLKFVRRQRKGNAGVDAAA 376
           R RK+   A  PG+ A      S+   N K  + ++  K +  K VRR+ +GN G DA++
Sbjct: 41  RRRKRVRVAGQPGQVAEWRPSLSVISEN-KPAITKISEKNEEKKKVRRKSEGNGGGDASS 99

Query: 377 AASSGAAR 400
            +  G  R
Sbjct: 100 RSGGGHIR 107

>pir||A38160 thdF protein - Escherichia coli (fragment) gi|236585|gb|AAB19981.1|
           protein involved in thiophene and furan oxidation
           [Escherichia coli]
          Length = 439

 Score = 34.7 bits (78), Expect = 0.58
 Identities = 38/150 (25%), Positives = 54/150 (35%), Gaps = 11/150 (7%)
 Frame = +2

Query: 53  PNSHSCRFFPSHKYILAAQRLIRTATFTHARTFPKDRMT---------DVADWFRSLRGR 205
           P+S +   +  ++    +QR  RT  +   R    +R T             W R   GR
Sbjct: 94  PHSRNAAAYHRYRRATCSQRRSRTYWYRATRGRKLNRPTACCLWSMAPQQTPWIRQRSGR 153

Query: 206 KKAPCAESPGRTAATAARASIDVPNLKVTVHELIAKFDRLKFVRRQRKGNA--GVDAAAA 379
              P  +   R+   A +     P L VT   +I     L  V   ++     G DA  A
Sbjct: 154 NLLPVCQRNCRSPWCAIKPMD--PQLVVTGSHIIITLCLLHHVPADQRPVHLHGEDAYVA 211

Query: 380 ASSGAARRVDGLAQEPPPPGDDGDVDSWSG 469
           A      R  G +Q    PG+DG V S  G
Sbjct: 212 AEDSGNARASGRSQTAYQPGNDGAVQSCEG 241



EST assemble image


clone accession position
1 HCL043c03_r AV641970 1 478
2 MXL015f06_r BP093922 14 245




Chlamydomonas reinhardtii
Kazusa DNA Research Institute