Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002475A_C01 KCC002475A_c01
(277 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_491410.1| putative cytoplasmic protein (1F198) [Caenorhab... 31 5.6
gb|AAB65984.2| Hypothetical protein B0238.3 [Caenorhabditis eleg... 30 7.4
ref|NP_504403.1| putative protein family member, with at least 4... 30 7.4
>ref|NP_491410.1| putative cytoplasmic protein (1F198) [Caenorhabditis elegans]
gi|7497419|pir||T30952 hypothetical protein C44E4.2 -
Caenorhabditis elegans gi|2088728|gb|AAB54170.1|
Hypothetical protein C44E4.2 [Caenorhabditis elegans]
Length = 349
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -3
Query: 206 AFARLAENAKKKCHPSLGTGG*MCFYELIARVIRVIIQELWWGRLSKTKLVQKSKLLCFT 27
A AR+ + ++ P++ + FYE + +I++LW K V+K+ L+ F
Sbjct: 206 ALARILKRLQENKKPAIQDSEDISFYESSLHIYDELIKKLWPHLSKKDPNVKKNTLIIFE 265
Query: 26 QMFSL 12
++ SL
Sbjct: 266 KLISL 270
>gb|AAB65984.2| Hypothetical protein B0238.3 [Caenorhabditis elegans]
Length = 280
Score = 30.4 bits (67), Expect = 7.4
Identities = 15/35 (42%), Positives = 20/35 (56%)
Frame = -3
Query: 131 YELIARVIRVIIQELWWGRLSKTKLVQKSKLLCFT 27
YE+I RVI +I W G L L+ S++L FT
Sbjct: 88 YEVIVRVIGCMINSSWIGDLPMMSLLSVSRVLIFT 122
>ref|NP_504403.1| putative protein family member, with at least 4 transmembrane
domains (5F728) [Caenorhabditis elegans]
gi|25396432|pir||F89045 protein B0238.3 [imported] -
Caenorhabditis elegans
Length = 281
Score = 30.4 bits (67), Expect = 7.4
Identities = 15/35 (42%), Positives = 20/35 (56%)
Frame = -3
Query: 131 YELIARVIRVIIQELWWGRLSKTKLVQKSKLLCFT 27
YE+I RVI +I W G L L+ S++L FT
Sbjct: 88 YEVIVRVIGCMINSSWIGDLPMMSLLSVSRVLIFT 122
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,204,537
Number of Sequences: 1537769
Number of extensions: 5256952
Number of successful extensions: 22559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22555
length of database: 498,525,298
effective HSP length: 67
effective length of database: 395,494,775
effective search space used: 9491874600
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
