KCC002470A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002470A_C01 KCC002470A_c01
cattacaatgggcacgcatgatgggcacgcctggcccttataatacctttcgaatcttca
gtaaccagcttggtgaaccaACTTACTATCCGTTGGAAGTCCAGCAGGTAGCACGCCTCC
CATAGCATACCAACAGTAACGCATGCCCCCCGCACTCGGAGCCACTGCCCCGCCCCTGGC
CGTATCCAGACCGTAATCACCACATCATACAGCGCAACCACCCTCGACAGCGGACTATTA
CTGCCCAACCGAACGGGGGCATCATGCATCAATCAACACTCGTAAGCCCTGCATGACGCA
TGCCTGTACGGCAGTACCCCGTCACGAGACCTCCTGCCTGCTGCTCTGGAGCCGCGGGCG
CCAGGCAGCACAAGCACATACGGTACAATGAACTCTTTCTCCGAccgctccgacaggacc
ctaccggacccactctcagaccaaaactgtacacaaaccgctcaccgcctcacatcaacg
caag


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002470A_C01 KCC002470A_c01
         (484 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL84246.1|AF458046_1 type III effector HopPmaH [Pseudomonas ...    37  0.16
dbj|BAC87100.1| unnamed protein product [Homo sapiens]                 36  0.21
ref|XP_301250.1| similar to Mucin 2 precursor (Intestinal mucin ...    36  0.21
pir||T31108 cyst germination specific acidic repeat protein prec...    35  0.47
ref|NP_001420.1| E1A binding protein p300; E1A-binding protein, ...    35  0.47

>gb|AAL84246.1|AF458046_1 type III effector HopPmaH [Pseudomonas syringae pv. maculicola]
          Length = 540

 Score = 36.6 bits (83), Expect = 0.16
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 105 QVARLP*HTNSNACPPHSEPLPRPWPYPDRNHHIIQRNHPRQRTITAQPN 254
           Q+++ P   + ++  P + P P P P P     ++Q +HP  + +T Q N
Sbjct: 125 QLSQTPSSASPSSPSPSAAPAPAPTPTPTEKPFVVQNDHPADKPVTVQKN 174

>dbj|BAC87100.1| unnamed protein product [Homo sapiens]
          Length = 733

 Score = 36.2 bits (82), Expect = 0.21
 Identities = 31/78 (39%), Positives = 34/78 (42%), Gaps = 4/78 (5%)
 Frame = +2

Query: 98  SPAGSTPPIAYQQ*RMPPALGATAPPLAVSRP*SPHHTAQPPSTADYYCPTERGHHASIN 277
           SP  STP           A   TAP LA S   +PHHT+ P   A   CP   G H S  
Sbjct: 639 SPHHSTPHHTTHHTPHRTAPHRTAPYLATSHHTTPHHTSLPTHGAG--CPPP-GEHTSAE 695

Query: 278 TRKP--CMTH--ACTAVP 319
           T KP  C  +   CT VP
Sbjct: 696 TVKPDGCKWNLDVCTCVP 713

>ref|XP_301250.1| similar to Mucin 2 precursor (Intestinal mucin 2) [Homo sapiens]
          Length = 288

 Score = 36.2 bits (82), Expect = 0.21
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 78  PTYYPLEVQQVARLP*HTNSNACPPHSEPLPRPWPYPDRNH-HIIQRNHPRQRTITAQP 251
           PT YP +         HT S   P   +  P P PYP   H H + R HPR   I A P
Sbjct: 223 PTPYPGDTHV------HTLSRRHPHLIQATPTPTPYPGDTHVHTLSRRHPRPHLIRATP 275

>pir||T31108 cyst germination specific acidic repeat protein precursor -
           Phytophthora infestans gi|3851514|gb|AAC72308.1| cyst
           germination specific acidic repeat protein precursor
           [Phytophthora infestans]
          Length = 1489

 Score = 35.0 bits (79), Expect = 0.47
 Identities = 24/74 (32%), Positives = 35/74 (46%)
 Frame = +2

Query: 221 PSTADYYCPTERGHHASINTRKPCMTHACTAVPRHETSCLLLWSRGRQAAQAHTVQ*TLS 400
           P+ ++   PTER H+A I   KPC T      P  ET+    ++   +   A T + T +
Sbjct: 363 PTKSETNAPTERMHYAHI--EKPCDTEVTMYAPTEETT----YAPTEETTYAPTEETTYA 416

Query: 401 PTAPTGPYRTHSQT 442
           PT  T PY    +T
Sbjct: 417 PTEET-PYEPTEET 429

>ref|NP_001420.1| E1A binding protein p300; E1A-binding protein, 300kD [Homo sapiens]
            gi|3024341|sp|Q09472|P300_HUMAN E1A-associated protein
            p300 gi|627657|pir||A54277 transcription adaptor protein
            p300 - human gi|495301|gb|AAA18639.1| p300 protein
          Length = 2414

 Score = 35.0 bits (79), Expect = 0.47
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +3

Query: 147  PPHSEPLPRPWPYPDRNHHIIQRNHPRQRTITAQPNGGIMHQSTLVSP 290
            PPHS P PR  P P  +H   Q + P    + AQ N   M Q    SP
Sbjct: 2322 PPHSSPSPRMQPQPSPHHVSPQTSSPHPGLVAAQANP--MEQGHFASP 2367



EST assemble image


clone accession position
1 HCL042b06_r AV641899 1 358
2 MXL006c03_r BP093290 136 484




Chlamydomonas reinhardtii
Kazusa DNA Research Institute