>KCC002466A_C01 KCC002466A_c01
cgcagtcctacccggtgattgaccaccagtatgatgcaattgtcgttggagcgggaggag
ctggtctgcgcgcggcggtgGGCCTGTCGGAGCTGGGCTTCAACACAGCGTGCATCACGA
AGCTCTTTCCTACTCGTTCGCACACGGTCGCTGCCCAGGGCGGCATCAACGCCGCGCTGG
GCAACATGACCGAGGATGATTGGCGGTGGCATGCTTACGATACAATTAAGGGCAGCGACT
GGCTCGGCGACCAGGACGCAATTCACTACATGTGCCGCGAGGCACCAAAGGCCGTGATTG
AGCTGGAGAACTACGGCCTGCCGTTCTCGCGCACGGAGGATGGGAAAATTTACCAGCGTG
CCTTCGGCGGCCAGTCGCTGGACTTCGGCAAGGGCGGCCAGGCGTACCGCTGCGCCTGCG
CCGCTGACCGCACAGGTCACGCCATGCTCCACACGCTTTACGGCCAGGCCATGAAGCACG
ACATCCAGTTCTACGTGGAGTACTTCGCTCTGGATCTGATCATGGACAGCGACGGCGTGT
GTCGCGGCGTCATGGCGCTGTGCATGGA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002466A_C01 KCC002466A_c01
         (568 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC83515.1| putative succinate dehydrogenase flavoprotein al...   362  2e-99
ref|NP_201477.1| succinate dehydrogenase [ubiquinone], putative ...   355  2e-97
ref|NP_179435.1| succinate dehydrogenase [ubiquinone], putative ...   352  2e-96
gb|AAH45885.1| Similar to succinate dehydrogenase complex, subun...   328  4e-89
pir||A42792 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) fl...   327  5e-89

>dbj|BAC83515.1| putative succinate dehydrogenase flavoprotein alpha subunit [Oryza
           sativa (japonica cultivar-group)]
          Length = 630

 Score =  362 bits (929), Expect = 2e-99
 Identities = 169/187 (90%), Positives = 179/187 (95%)
 Frame = +3

Query: 6   SYPVIDHQYDAIVVGAGGAGLRAAVGLSELGFNTACITKLFPTRSHTVAAQGGINAALGN 185
           SY V+DH YDA+VVGAGGAGLRAA+GLSE GFNTACITKLFPTRSHTVAAQGGINAALGN
Sbjct: 38  SYTVVDHSYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN 97

Query: 186 MTEDDWRWHAYDTIKGSDWLGDQDAIHYMCREAPKAVIELENYGLPFSRTEDGKIYQRAF 365
           MTEDDWRWH YDT+KGSDWLGDQD+I YMCREAPKAVIELENYGLPFSRTEDGKIYQRAF
Sbjct: 98  MTEDDWRWHMYDTVKGSDWLGDQDSIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAF 157

Query: 366 GGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHDIQFYVEYFALDLIMDSDGVCR 545
           GGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKH+ QF+VEYFALDLIMDS+G C+
Sbjct: 158 GGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSEGTCQ 217

Query: 546 GVMALCM 566
           GV+AL M
Sbjct: 218 GVIALNM 224

>ref|NP_201477.1| succinate dehydrogenase [ubiquinone], putative [Arabidopsis
           thaliana] gi|20454872|sp|O82663|DHSA_ARATH Succinate
           dehydrogenase [ubiquinone] flavoprotein subunit,
           mitochondrial (FP) (Flavoprotein subunit of complex II)
           gi|11252512|pir||T51815 succinate dehydrogenase (EC
           1.3.99.1) flavoprotein alpha chain [imported] -
           Arabidopsis thaliana gi|3660471|emb|CAA05025.1|
           succinate dehydrogenase flavoprotein alpha subunit
           [Arabidopsis thaliana] gi|8843734|dbj|BAA97282.1|
           succinate dehydrogenase flavoprotein alpha subunit
           [Arabidopsis thaliana]
           gi|13605885|gb|AAK32928.1|AF367341_1 AT5g66760/MSN2_16
           [Arabidopsis thaliana] gi|15010746|gb|AAK74032.1|
           AT5g66760/MSN2_16 [Arabidopsis thaliana]
           gi|16930699|gb|AAL32015.1|AF436833_1 AT5g66760/MSN2_16
           [Arabidopsis thaliana] gi|21700795|gb|AAM70521.1|
           AT5g66760/MSN2_16 [Arabidopsis thaliana]
          Length = 634

 Score =  355 bits (911), Expect = 2e-97
 Identities = 165/187 (88%), Positives = 178/187 (94%)
 Frame = +3

Query: 6   SYPVIDHQYDAIVVGAGGAGLRAAVGLSELGFNTACITKLFPTRSHTVAAQGGINAALGN 185
           SY ++DH YDA+VVGAGGAGLRAA+GLSE GFNTACITKLFPTRSHTVAAQGGINAALGN
Sbjct: 42  SYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN 101

Query: 186 MTEDDWRWHAYDTIKGSDWLGDQDAIHYMCREAPKAVIELENYGLPFSRTEDGKIYQRAF 365
           M+EDDWRWH YDT+KGSDWLGDQDAI YMCREAPKAVIELENYGLPFSRTE+GKIYQRAF
Sbjct: 102 MSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAF 161

Query: 366 GGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHDIQFYVEYFALDLIMDSDGVCR 545
           GGQSLDFGKGGQAYRCACAADRTGHA+LHTLYGQAMKH+ QF+VEYFALDL+M SDG C+
Sbjct: 162 GGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMASDGSCQ 221

Query: 546 GVMALCM 566
           GV+AL M
Sbjct: 222 GVIALNM 228

>ref|NP_179435.1| succinate dehydrogenase [ubiquinone], putative [Arabidopsis
           thaliana] gi|25284602|pir||D84564 hypothetical protein
           At2g18450 [imported] - Arabidopsis thaliana
           gi|4309723|gb|AAD15493.1| putative succinate
           dehydrogenase flavoprotein subunit [Arabidopsis
           thaliana] gi|26453278|dbj|BAC43712.1| putative succinate
           dehydrogenase flavoprotein subunit [Arabidopsis
           thaliana] gi|29028988|gb|AAO64873.1| At2g18450
           [Arabidopsis thaliana]
          Length = 632

 Score =  352 bits (903), Expect = 2e-96
 Identities = 164/187 (87%), Positives = 177/187 (93%)
 Frame = +3

Query: 6   SYPVIDHQYDAIVVGAGGAGLRAAVGLSELGFNTACITKLFPTRSHTVAAQGGINAALGN 185
           SY ++DH YDA+VVGAGGAGLRAA+GLSE GFNTACITKLFPTRSHTVAAQGGINAALGN
Sbjct: 40  SYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN 99

Query: 186 MTEDDWRWHAYDTIKGSDWLGDQDAIHYMCREAPKAVIELENYGLPFSRTEDGKIYQRAF 365
           M+ DDWRWH YDT+KGSDWLGDQDAI YMCREAPKAVIELENYGLPFSRTEDGKIYQRAF
Sbjct: 100 MSVDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAF 159

Query: 366 GGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHDIQFYVEYFALDLIMDSDGVCR 545
           GGQSL+FG GGQAYRCACAADRTGHA+LHTLYGQAMKH+ QF+VEYFALDLIM+SDG C+
Sbjct: 160 GGQSLEFGIGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQ 219

Query: 546 GVMALCM 566
           GV+AL M
Sbjct: 220 GVIALNM 226

>gb|AAH45885.1| Similar to succinate dehydrogenase complex, subunit A, flavoprotein
           (Fp) [Danio rerio]
          Length = 661

 Score =  328 bits (840), Expect = 4e-89
 Identities = 146/186 (78%), Positives = 172/186 (91%)
 Frame = +3

Query: 9   YPVIDHQYDAIVVGAGGAGLRAAVGLSELGFNTACITKLFPTRSHTVAAQGGINAALGNM 188
           YPV+DH++DA+VVGAGGAGLRAA GLSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM
Sbjct: 52  YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNM 111

Query: 189 TEDDWRWHAYDTIKGSDWLGDQDAIHYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFG 368
            +DDWRWH YDT+KGSDWLGDQDAIHYM  +AP AV+ELEN+G+PFSRT+DGKIYQRAFG
Sbjct: 112 EQDDWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENFGMPFSRTDDGKIYQRAFG 171

Query: 369 GQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHDIQFYVEYFALDLIMDSDGVCRG 548
           GQSL FGKGGQA+RC C ADRTGH++LHTLYG+++++D  ++VEYFALDL+M+ DG C+G
Sbjct: 172 GQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLME-DGECKG 230

Query: 549 VMALCM 566
           V+ALCM
Sbjct: 231 VIALCM 236

>pir||A42792 succinate dehydrogenase (ubiquinone) (EC 1.3.5.1) flavoprotein
           chain precursor, mitochondrial - bovine
          Length = 665

 Score =  327 bits (839), Expect = 5e-89
 Identities = 147/186 (79%), Positives = 172/186 (92%)
 Frame = +3

Query: 9   YPVIDHQYDAIVVGAGGAGLRAAVGLSELGFNTACITKLFPTRSHTVAAQGGINAALGNM 188
           YPV+DH++DA+VVGAGGAGLRAA GLSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM
Sbjct: 56  YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNM 115

Query: 189 TEDDWRWHAYDTIKGSDWLGDQDAIHYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFG 368
            ED+WRWH YDT+KGSDWLGDQDAIHYM  +AP +V+ELENYG+PFSRTEDGKIYQRAFG
Sbjct: 116 EEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFG 175

Query: 369 GQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHDIQFYVEYFALDLIMDSDGVCRG 548
           GQSL FGKGGQA+RC C ADRTGH++LHTLYG+++++D  ++VEYFALDL+M+S G CRG
Sbjct: 176 GQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMES-GECRG 234

Query: 549 VMALCM 566
           V+ALC+
Sbjct: 235 VIALCI 240

EST assemble image

clone accession position 1 MXL006d06_r BP093298 1 253 2 HCL041d03_r AV641852 112 568

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