KCC002464A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002464A_C01 KCC002464A_c01
ttCGCTTGAGTGGTCCAATAGCGTTGCTGCTTGCCCTTGAAGTGGCCCTGCAACCAAGCC
CACCGAAGTAACCAACTTCTCTCCCCGATAAGCGCACTGCACCAGCTGCTGAAGACCAAT
AGCTCTACTTGACCCCAATCGGCGAGAGGAAAACAATTGGGCGACTCTCGAGGAGCGAAC
CTCAAAAAGCGGTGGTAGGGTCTTATTCGAGCGCGAGCTCTTCAACCCAGCCAGTCGCGC
CATCTCAATACCTGCTTTGCTCAATTTTGCAAAGCGCTGGACGTGCGACAAGGATTTCGC
GCGCGTGGGAAGTGCCATTCCGCCGCGTCGTGTAACTCTGAACGGGAGGACGCTGGCGCA
CCACCATGCTGAACCAATGCATTAACAGCCACCGGTCGCCGTCGGCACGCCTCAGCCCTG
CGGCATCCCCCGCCACCGCCGCCGCGTGCACACTTCTACCCCACACTCAACACGGTCAAC
CCATGATGTCACCAGCCGCCGTCATCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002464A_C01 KCC002464A_c01
         (508 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC83941.1| hypothetical protein [Oryza sativa (japonica cul...    37  0.14
dbj|BAC40309.1| unnamed protein product [Mus musculus]                 37  0.18
pir||S39206 proline-rich protein V-beta 1 precursor - rat gi|433...    30  0.28
sp|P33485|VNUA_PRVKA PROBABLE NUCLEAR ANTIGEN gi|418708|pir||B45...    31  0.81
gb|AAH44006.1| Similar to core-binding factor, runt domain, alph...    34  0.92

>dbj|BAC83941.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 121

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 298 RARGKCHSAASCNSEREDAGAPPC*TNALTATGRRRHASA-LRHPPPPPPR 447
           R R + H+AA+  + R     PP   +A  AT  +RHA+A +  PPPPPPR
Sbjct: 5   RRRRRRHTAAAFAAAR---AKPPPPRHAAAATASQRHAAAAVATPPPPPPR 52

>dbj|BAC40309.1| unnamed protein product [Mus musculus]
          Length = 101

 Score = 36.6 bits (83), Expect = 0.18
 Identities = 21/46 (45%), Positives = 24/46 (51%), Gaps = 3/46 (6%)
 Frame = -3

Query: 419 RAEACRRRPVAVNALVQHGGA---PASSRSELHDAAEWHFPRARNP 291
           RA A   RPVAV      GGA    A+ R+   DA  W FPR R+P
Sbjct: 9   RAAAWAARPVAVCWTAARGGAGLGEATERAPARDAGAWGFPRGRDP 54

>pir||S39206 proline-rich protein V-beta 1 precursor - rat
           gi|433617|emb|CAA52300.1| VCS-beta1 [Rattus rattus]
           gi|471332|emb|CAA54831.1| PR-Vbeta1 [Rattus norvegicus]
          Length = 148

 Score = 29.6 bits (65), Expect(2) = 0.28
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 427 PPPPPPRAHFYPTLNTVNP*CHQPPSS 507
           PPPPPP   FYP     +P  H+PP++
Sbjct: 81  PPPPPPPFGFYPPY-IPHPPHHRPPAN 106

 Score = 25.4 bits (54), Expect(2) = 0.28
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 394 GRRRHASALRHPPPPPP 444
           G R H    R PPPPPP
Sbjct: 25  GPRGHDPRRRPPPPPPP 41

>sp|P33485|VNUA_PRVKA PROBABLE NUCLEAR ANTIGEN gi|418708|pir||B45344 probable nuclear
           antigen - suid herpesvirus 1 (strain Kaplan)
           gi|334072|gb|AAA47471.1| ORF-3 protein
          Length = 1733

 Score = 31.2 bits (69), Expect(2) = 0.81
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 385 TATGRRRHASALRHPPPPPPRAHF 456
           T T    H     HPPPPP R HF
Sbjct: 17  TTTRDHHHQQHHHHPPPPPSRTHF 40

 Score = 21.9 bits (45), Expect(2) = 0.81
 Identities = 11/27 (40%), Positives = 15/27 (54%), Gaps = 2/27 (7%)
 Frame = +1

Query: 430 PPPPPRAHFYPT--LNTVNP*CHQPPS 504
           PP PP+ H  PT   +  +P  H PP+
Sbjct: 73  PPRPPQDHHRPTPARDHRDPRDHLPPT 99

>gb|AAH44006.1| Similar to core-binding factor, runt domain, alpha subunit 2;
           translocated to, 2 [Xenopus laevis]
          Length = 586

 Score = 34.3 bits (77), Expect = 0.92
 Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
 Frame = +1

Query: 208 RARALQPSQ--SRH----LNTCFAQFCKALDVRQGFRARGKCHSAASCNSEREDAGAPPC 369
           RA    PSQ  ++H    LNT  +    + ++       GK HS      ERE A A P 
Sbjct: 183 RAAKQTPSQYLAQHEHILLNTSTSSPADSSELLMELNGNGKRHSPDRREEERETAPAEPP 242

Query: 370 *TNALTATGRRRHASALRHP---------PPPPPRAHF 456
                T +   RH+ AL  P         P PPP  H+
Sbjct: 243 VKRVCTISPAPRHSPALSLPLVNSTSHFHPTPPPLQHY 280



EST assemble image


clone accession position
1 HCL047b02_r AV642188 1 494
2 HCL055d02_r AV642649 20 537
3 HCL040f12_r AV641812 23 371
4 LCL049g11_r AV628973 216 453




Chlamydomonas reinhardtii
Kazusa DNA Research Institute