KCC002459A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002459A_C01 KCC002459A_c01
cagcaccagcaccaagccctcccccgccgcaactggcagcccaagcccctcggctagccc
ctcgcccattcttgcggttgCGGCGCGGGCGCCCGAGGGCTTCGACTTGATTGTGGCCGG
CGGCAGCGACGACGGCCAGGACTTCGCGGCTCGCGTGCTGTTCAACCCGCAGTTTGTGGA
GCGGTGCGACCCGCAGGACAGCCTGGTGCTGGACCTGGGGCTGCTGCCGGAGACGTCCGC
GGCGCTGCCGCTGACGCTGCAGGCCAGCAGCGGCGCATTGCCGCTGCGGCACAGCGTGCA
GCCTCCTGCAAATAGCGGCGACGGCGGCGACAGCGGGCTGGAGCTGGGTGGGAGCGAGCT
GGTGGTCACCCCCGCCACGCGCGCAGCAGTGCGGGTGCGCGTGGATGCGAGGGAGGCTGC
TGTCGCTTTGGCGGCTGCAGCTGCAGCTGCGGCCGCGGCCGCCGCGGCCAGCGGTAGCCC
TGGGTCAAACGTGTTGCTGCCGAGCGGCGGCGGCGGCGTTATTACCACCAGCAGCAAGGT
GGCCATGGACACCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002459A_C01 KCC002459A_c01
         (554 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00136439.1| COG0642: Signal transduction histidine kinase...    55  5e-07
gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]         54  1e-06
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ...    52  4e-06
emb|CAB40552.1| p210 protein [Spermatozopsis similis]                  52  5e-06
gb|AAK13145.1|AC083945_20 Hypothetical protein [Oryza sativa] gi...    52  7e-06

>ref|ZP_00136439.1| COG0642: Signal transduction histidine kinase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 703

 Score = 55.5 bits (132), Expect = 5e-07
 Identities = 66/181 (36%), Positives = 73/181 (39%), Gaps = 14/181 (7%)
 Frame = -1

Query: 518 RRRR----RSAATRLTQGYRW-----PRRP-RPQLQLQPPKRQQPPSHPRAPALLRAWRG 369
           RRRR    R    RL +G R      PRRP RPQ   + P R+ P  H  A A  R    
Sbjct: 56  RRRRQLRSRRHRHRLPRGRRGGLRSRPRRPGRPQPGARQPLRRDPAGH-HAAAHQRPAGL 114

Query: 368 *PPARSHPA-PARCRRRRRYLQEAARCAAAAMRRCWPAASAAAPRTSPAAAPGPAPGCPA 192
            P ARS PA P     R  Y    AR      RR    A   A    P A+P PAP  P 
Sbjct: 115 SPAARSRPADPGTHAHRPGYPAGQARRLRRRRRRLSAQALRTAGAAGPPASPQPAPQRPG 174

Query: 191 GRTAPQTAG*TAREPRSPGRRRC--RRPQSSRSPRAP-APQPQEWARG*PRGLGCQLRRG 21
              A +  G   R+P    RR      P     PR P A QP+    G PR  G Q R G
Sbjct: 175 PAPAGRRPGDGPRQPPGQPRRHAPGAVPHRLEDPRVPDARQPR---AGHPRAAGAQ-RLG 230

Query: 20  R 18
           R
Sbjct: 231 R 231

>gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]
          Length = 816

 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 64/176 (36%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
 Frame = -1

Query: 461 RPRPQLQLQPPK---RQQPPSHPRAPALLRAWRG*PPARSHPAPARCRRRRRYLQEAARC 291
           RPR +  L+P     R  PP   R P    A RG PP    P P    RRR  L+ A R 
Sbjct: 285 RPRVRAPLRPRHADGRLSPPPGRRGPPRGDARRGPPPRPRRPRP----RRRAPLRSARRG 340

Query: 290 AAAAMRR----CW--PAASAAAPR--------TSPAAAPGPAPG----CPAGRTAPQTAG 165
           A  A RR    C   P     APR          PAA PGP P       A   A +  G
Sbjct: 341 APDARRRRRRVCRGPPRGRGGAPRGPARLPRAPPPAARPGPPPPGRALVRARAPAARLRG 400

Query: 164 *TAREPRSPGRRRCR-RPQSSRSPRAP------APQPQEWARG*PRGLGCQLRRGR 18
                PR   RRR R RP+  R  RAP      AP+P+   RG P   G + R GR
Sbjct: 401 ARRGPPRGALRRRPRARPRVPRVLRAPRRDRPVAPRPRPVRRGPP---GAEARPGR 453

 Score = 51.6 bits (122), Expect = 7e-06
 Identities = 56/160 (35%), Positives = 65/160 (40%), Gaps = 9/160 (5%)
 Frame = -1

Query: 467 PRRPRPQLQLQPPKRQQPPSHPRAP-------ALLRAWRG*PPARSHPAPARCRRRRRYL 309
           PR+  P   L  P R++PP+  RAP          RA R  P  R  P    CRR RR  
Sbjct: 110 PRQRAPGRALGAPGRRRPPAGRRAPVRGDRRRGRPRAPRRGPGGRLGPRAPVCRRPRRAG 169

Query: 308 QEAARCA--AAAMRRCWPAASAAAPRTSPAAAPGPAPGCPAGRTAPQTAG*TAREPRSPG 135
           + A   A     +RR  PA  A  P         P  G P G  AP   G     PR  G
Sbjct: 170 RGAPGRAPGRVPVRRRVPARPAPPPAARYRVRALPERGAPRG--APGRHGPPGLRPR--G 225

Query: 134 RRRCRRPQSSRSPRAPAPQPQEWARG*PRGLGCQLRRGRA 15
           R  C R       R P P P+  ARG PRG+  +L R  A
Sbjct: 226 RGACAR-------RRPLPVPR--ARGPPRGVRARLGRDAA 256

 Score = 48.5 bits (114), Expect = 6e-05
 Identities = 58/189 (30%), Positives = 70/189 (36%), Gaps = 36/189 (19%)
 Frame = -1

Query: 515 RRRRSAATRLTQGYRWPRRPRPQLQLQPPKRQQPPSHPRAPALLRAWRG*PPA------- 357
           RRR  A  R+ +  R PRR RP      P R+ PP     P   R  RG PP        
Sbjct: 411 RRRPRARPRVPRVLRAPRRDRPVAPRPRPVRRGPPGAEARPGRRRGRRGGPPTSGLAFTQ 470

Query: 356 RSHPAPARCRRRRRYLQEAARCAAAAMRRCWPAASAAAPRTS----PAAAPGPAPGCPAG 189
              P P   RR     +  A  ++ A++R   A + A P  S     AAA     G    
Sbjct: 471 SGAPDPRAARRPATSPRSRATSSSRALKRRAVATAGAPPSASRSSTRAAAVRRRSGSRTR 530

Query: 188 RTA--PQTAG*TAREPRS-------------PGRRR---CRRPQSSRSPRAP-------A 84
           R A  P+T G +   PRS             PG  R    RR      P AP       A
Sbjct: 531 RWARTPRTTG-SPTAPRSGRQPANVDLRGGPPGEERGPAARRELVGDHPEAPHVRGRRVA 589

Query: 83  PQPQEWARG 57
           P PQ+  RG
Sbjct: 590 PAPQDLRRG 598

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 50/151 (33%), Positives = 58/151 (38%), Gaps = 8/151 (5%)
 Frame = -1

Query: 518 RRRRRSAATRLTQGYRWPRRPRPQLQLQPPKRQQPPSHPRAPALLRA------WRG*PPA 357
           RRRRR       +G     R   +L   PP   +P   P   AL+RA       RG   A
Sbjct: 345 RRRRRRVCRGPPRGRGGAPRGPARLPRAPPPAARPGPPPPGRALVRARAPAARLRG---A 401

Query: 356 RSHPAPARCRRRRRYLQEAARCAAAAMRRCWPAASAAAP-RTSPAAAPGPAPGCPAGRTA 180
           R  P     RRR R      R   A  RR  P A    P R  P  A    PG   GR  
Sbjct: 402 RRGPPRGALRRRPRARPRVPRVLRAP-RRDRPVAPRPRPVRRGPPGAEA-RPGRRRGRRG 459

Query: 179 -PQTAG*TAREPRSPGRRRCRRPQSSRSPRA 90
            P T+G    +  +P  R  RRP +S   RA
Sbjct: 460 GPPTSGLAFTQSGAPDPRAARRPATSPRSRA 490

 Score = 37.0 bits (84), Expect(2) = 0.005
 Identities = 42/128 (32%), Positives = 50/128 (38%), Gaps = 4/128 (3%)
 Frame = +1

Query: 130 RRPGLRGSRAVQPAVCGAVRPAGQPGAGPG-AAAGDVRGAAADAAGQQRRIAAAAQRAAS 306
           R  GLR +      V   +RP G+P A PG    G   G   D   +QR    A  RA  
Sbjct: 65  RGRGLRAASGALRGVRPVLRPRGRPVARPGRVGRGGGLGRLRDGRPRQR----APGRALG 120

Query: 307 CK*RRR--RRQRAGAGWERAGGHPRHARSSAGAR-GCEGGCCRFGGCSCSCGRGRRGQR* 477
              RRR    +RA    +R  G PR  R   G R G     CR    +     GR   R 
Sbjct: 121 APGRRRPPAGRRAPVRGDRRRGRPRAPRRGPGGRLGPRAPVCRRPRRAGRGAPGRAPGRV 180

Query: 478 PWVKRVAA 501
           P  +RV A
Sbjct: 181 PVRRRVPA 188

 Score = 33.1 bits (74), Expect(2) = 0.031
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
 Frame = +1

Query: 88  GARGLRLDCGRRQRRR-----PGLRGSRAVQPAVCGAVRPAGQPGAGPGAAAGDVRGAAA 252
           G  G     GRR+ RR      GL  +++  P    A RPA  P +   +++  ++  A 
Sbjct: 443 GPPGAEARPGRRRGRRGGPPTSGLAFTQSGAPDPRAARRPATSPRSRATSSSRALKRRAV 502

Query: 253 DAAGQQRRIAAAAQRAASCK*RRRRRQRAGAGWERAGGHPRHARS 387
             AG     + ++ RAA+ + R   R R  A   R  G P   RS
Sbjct: 503 ATAGAPPSASRSSTRAAAVRRRSGSRTRRWARTPRTTGSPTAPRS 547

 Score = 32.0 bits (71), Expect = 5.7
 Identities = 48/159 (30%), Positives = 50/159 (31%), Gaps = 38/159 (23%)
 Frame = -1

Query: 413 PSHPRAPALLRAWRG*PPARSHPAPARCRRRRR-----YLQEAARCAAAAMRRCWPAASA 249
           P  PR      A R   PA   P P R   R        L  A R A  A  R   AAS 
Sbjct: 15  PGAPRPGRPRGAQRAPRPAPDPPGPGRRPPRAPGALGGMLPAAGRLAGPARGRGLRAASG 74

Query: 248 A--------APRTSPAA----------------------APGPAPGCPAGRTAPQTAG*T 159
           A         PR  P A                      APG A G P  R  P      
Sbjct: 75  ALRGVRPVLRPRGRPVARPGRVGRGGGLGRLRDGRPRQRAPGRALGAPGRRRPPAGRRAP 134

Query: 158 AREPRSPGRRRC--RRPQSSRSPRAP-APQPQEWARG*P 51
            R  R  GR R   R P     PRAP   +P+   RG P
Sbjct: 135 VRGDRRRGRPRAPRRGPGGRLGPRAPVCRRPRRAGRGAP 173

 Score = 28.9 bits (63), Expect(2) = 6.1
 Identities = 44/152 (28%), Positives = 55/152 (35%), Gaps = 24/152 (15%)
 Frame = +1

Query: 43  KPLG*PLAHSCGCGAGARGLRLDCGRRQRR-------RPGLRGSRAVQPAVCGAVRPAGQ 201
           +P G P+A     G G    RL  GR ++R        PG R   A + A     R  G+
Sbjct: 84  RPRGRPVARPGRVGRGGGLGRLRDGRPRQRAPGRALGAPGRRRPPAGRRAPVRGDRRRGR 143

Query: 202 PGA---GPGAAAGD-----------VRGAAADAAGQ---QRRIAAAAQRAASCK*RRRRR 330
           P A   GPG   G             RGA   A G+   +RR+ A      + + R R  
Sbjct: 144 PRAPRRGPGGRLGPRAPVCRRPRRAGRGAPGRAPGRVPVRRRVPARPAPPPAARYRVRAL 203

Query: 331 QRAGAGWERAGGHPRHARSSAGARGCEGGCCR 426
              GA     G   RH       RG  G C R
Sbjct: 204 PERGA---PRGAPGRHGPPGLRPRG-RGACAR 231

 Score = 25.4 bits (54), Expect(2) = 0.031
 Identities = 17/35 (48%), Positives = 18/35 (50%), Gaps = 1/35 (2%)
 Frame = +3

Query: 3   APAPSPPPPQLAAQAPRLAPRPFLR-LRRGRPRAS 104
           A  P PPPP  A    R AP   LR  RRG PR +
Sbjct: 376 AARPGPPPPGRALVRAR-APAARLRGARRGPPRGA 409

 Score = 24.3 bits (51), Expect(2) = 0.005
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 9   APSPPPPQLAAQAPRLAPRPFLRLRR--GRPRAST*LWPAAATTARTSR 149
           AP P  P+ A +APR AP P    RR    P A   + PAA   A  +R
Sbjct: 17  APRPGRPRGAQRAPRPAPDPPGPGRRPPRAPGALGGMLPAAGRLAGPAR 65

 Score = 21.6 bits (44), Expect(2) = 6.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 3  APAPSPPPPQLAAQAPR 53
          AP P+P PP    + PR
Sbjct: 29 APRPAPDPPGPGRRPPR 45

>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
           [Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
           elegans RSR-1 protein (corresponding sequence F28D9.1)
           [Caenorhabditis elegans]
          Length = 601

 Score = 52.4 bits (124), Expect = 4e-06
 Identities = 49/154 (31%), Positives = 74/154 (47%), Gaps = 4/154 (2%)
 Frame = -1

Query: 518 RRRRRSAATRLTQGYRWPRRPRPQLQLQPPKRQQPPSHPRAPALLRAWRG*PPARSHPAP 339
           RRRR  +A++       P+R + + +  P +R++ PS  ++P   R  R    +RS PAP
Sbjct: 346 RRRRSPSASKSPPPA--PKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRS-PAP 402

Query: 338 AR--CRRRRRYLQEAARCAAAAMRRCWPAASAAAP--RTSPAAAPGPAPGCPAGRTAPQT 171
            R     RRR    A++   A  R    + S  AP  R SP+ +  PA   P  R +P  
Sbjct: 403 KREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPA---PRRRRSPSK 459

Query: 170 AG*TAREPRSPGRRRCRRPQSSRSPRAPAPQPQE 69
           +    R  RSP   + R P+  RSP A AP+ ++
Sbjct: 460 SPQAPRRRRSPSGSKSRSPRRRRSP-AAAPRRRQ 492

 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 51/158 (32%), Positives = 73/158 (45%), Gaps = 9/158 (5%)
 Frame = -1

Query: 518 RRRRRSAATRLTQGYR------WPRRPRPQLQLQPPKRQQPPSHPRAPALLRAWRG*PPA 357
           RRRR  +A++     R        R P P+ ++ P +R++ PS  ++P   +  R    +
Sbjct: 374 RRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSASKSPPAPK--RAKSRS 431

Query: 356 RSHPAPARCRRRRRYLQEAARCAAAAMRRCWPAASAAAPRTSPAAAPGPAPGCPAGRTAP 177
           +S PAP   RRRR   Q     + A  RR  P+ S  APR   + + G     P  R +P
Sbjct: 432 KSPPAP---RRRRSPSQSK---SPAPRRRRSPSKSPQAPRRRRSPS-GSKSRSPRRRRSP 484

Query: 176 QTAG*TAREP---RSPGRRRCRRPQSSRSPRAPAPQPQ 72
             A    + P   RSP RR  R P SS   R+P P P+
Sbjct: 485 AAAPRRRQSPQRRRSPRRR--RSPSSSSRSRSPPPPPR 520

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 56/178 (31%), Positives = 74/178 (41%), Gaps = 34/178 (19%)
 Frame = -1

Query: 503 SAATRLTQGYRWPRRPR-PQLQLQPP--KRQQPPSHPRAPALLRAWRG*PPARSHPAPAR 333
           S A R   G   PRR R P     PP  +R++ PS  ++PA  RA      ++S PAPAR
Sbjct: 292 SVAARAKSGS--PRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSR---SKSPPAPAR 346

Query: 332 CRR------------------------RRRYLQEAARCAAAAMRRCWPAASA--AAPRTS 231
            RR                        RRR    A++   A  RR  P+ S   A  R  
Sbjct: 347 RRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREI 406

Query: 230 PAAAPGPAPGCPAGRTAPQTAG*TAREPRSPGRRRCRRPQSSRSP-----RAPAPQPQ 72
           P A    +P       AP+ A   ++ P +P RR  R P  S+SP     R+P+  PQ
Sbjct: 407 PPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRR--RSPSQSKSPAPRRRRSPSKSPQ 462

 Score = 40.0 bits (92), Expect = 0.021
 Identities = 47/158 (29%), Positives = 65/158 (40%), Gaps = 13/158 (8%)
 Frame = -1

Query: 512 RRRSAATRLTQGYRWPRR--PRPQLQLQPPKRQQPPSHPRAPALLRAWRG*PPARSHPAP 339
           RRRS   R +     PRR  PR   +  PP+R+  P         R     P        
Sbjct: 212 RRRSPPRRGS-----PRRGSPRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKERE 266

Query: 338 ARCRRR---RRYLQEAARCAAAAMRRCWPAASAAAPRT--SPAAAPGPAPG------CPA 192
              RRR   R+   E A     A+      A + +PR   SP+A+  P P         +
Sbjct: 267 EESRRREIERKKRHEEAELRQKAIASVAARAKSGSPRRRRSPSASKSPPPARRRRSPSQS 326

Query: 191 GRTAPQTAG*TAREPRSPGRRRCRRPQSSRSPRAPAPQ 78
              AP+ A   ++ P +P RRR R P +S+SP  PAP+
Sbjct: 327 KSPAPKRAKSRSKSPPAPARRR-RSPSASKSP-PPAPK 362

 Score = 39.3 bits (90), Expect = 0.036
 Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
 Frame = -1

Query: 518 RRRRRSAATRLTQGYRWPRRPRPQLQLQP-PKRQQPPSHPRAPALLRAWRG*PPARSHPA 342
           RRRR  +A++       P+R + + +  P P+R++ PS  ++PA  R      P++S  A
Sbjct: 410 RRRRSPSASKSPPA---PKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRRS---PSKSPQA 463

Query: 341 PARCR----------RRRRYLQEAARCAAAAMRRCWPAASAAAPRTSPAAAPGPAPGCPA 192
           P R R          RRRR    A R   +  RR  P    +   +S + +P P P  P 
Sbjct: 464 PRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRSRSPPPPPRRPR 523

Query: 191 GRTAPQTAG*TAREPRSPGRR 129
            + + Q A    + P    RR
Sbjct: 524 -QDSEQQAPVAVKSPEMKKRR 543

>emb|CAB40552.1| p210 protein [Spermatozopsis similis]
          Length = 609

 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 48/135 (35%), Positives = 64/135 (46%), Gaps = 3/135 (2%)
 Frame = -1

Query: 467 PRRPRPQLQLQPPKRQQPPSHPRAP---ALLRAWRG*PPARSHPAPARCRRRRRYLQEAA 297
           P+ P PQ   QPP++QQ    P AP   ALL++      A + PAP+           A 
Sbjct: 113 PQAPPPQ---QPPQQQQWAPAPAAPPGAALLQS----AGALAGPAPS-----------AG 154

Query: 296 RCAAAAMRRCWPAASAAAPRTSPAAAPGPAPGCPAGRTAPQTAG*TAREPRSPGRRRCRR 117
           + AAA       AA AAAP+   A    P P  P    APQ       +P+ P +++   
Sbjct: 155 QVAAAQAVLSRQAAPAAAPQAPQAPQFAPPPQAPQFAPAPQ-------QPQ-PQQQQPAA 206

Query: 116 PQSSRSPRAPAPQPQ 72
           PQ +  P+APAPQPQ
Sbjct: 207 PQFAPPPQAPAPQPQ 221

 Score = 39.7 bits (91), Expect = 0.027
 Identities = 41/133 (30%), Positives = 55/133 (40%), Gaps = 4/133 (3%)
 Frame = -1

Query: 467 PRRPRPQLQLQPPKRQQPPSHPRAPALLRAWRG*PPARSHPAPARCRRRRRYLQEAARCA 288
           P++P+PQ Q     +  PP  P+APA    +   P  +   AP      ++  Q+ A   
Sbjct: 194 PQQPQPQQQQPAAPQFAPP--PQAPAPQPQFAPAPQQQQALAPQFAPAPQQPQQQPAFAP 251

Query: 287 AAAMRRCWPAASAAAPRTSPAA--AP--GPAPGCPAGRTAPQTAG*TAREPRSPGRRRCR 120
           A       PA  A AP+ +P    AP   P P  PA   APQ        P + G  + R
Sbjct: 252 APQA----PAPQAPAPQFAPQQPLAPQFAPVPQAPAYAPAPQQPSYAPASPPAAGSPQPR 307

Query: 119 RPQSSRSPRAPAP 81
            P  S   R PAP
Sbjct: 308 PPAGS-PVRPPAP 319

 Score = 33.1 bits (74), Expect = 2.6
 Identities = 42/139 (30%), Positives = 52/139 (37%), Gaps = 4/139 (2%)
 Frame = -1

Query: 467 PRRPRPQLQLQPPKRQQPPSHPRAPALLRAWRG*PPARSHPAP---ARCRRRRRYL-QEA 300
           P  P PQ+  Q   R    + P  P+ L+       A S PAP   A   +   Y  Q A
Sbjct: 7   PPLPSPQVLAQQAARALSMAPPPPPSALQQ------AASQPAPPAYAPPPQPASYAPQPA 60

Query: 299 ARCAAAAMRRCWPAASAAAPRTSPAAAPGPAPGCPAGRTAPQTAG*TAREPRSPGRRRCR 120
            + A A      P A   AP+    A P PA        APQ     A  P +P      
Sbjct: 61  QQQAPAPPTYAPPPAQQQAPQAPAYAPPAPAQQQAPAPQAPQA---YAPAPVAPA----- 112

Query: 119 RPQSSRSPRAPAPQPQEWA 63
            PQ+   P    PQ Q+WA
Sbjct: 113 -PQA--PPPQQPPQQQQWA 128

>gb|AAK13145.1|AC083945_20 Hypothetical protein [Oryza sativa] gi|31431520|gb|AAP53293.1|
           hypothetical protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 254

 Score = 51.6 bits (122), Expect = 7e-06
 Identities = 50/147 (34%), Positives = 60/147 (40%), Gaps = 5/147 (3%)
 Frame = +1

Query: 82  GAGARGLRLDCGRRQRRRPGLRGSRAVQPAVCGAVRPAGQPGAGPGAAAGDVRGAAADAA 261
           G+G RG R   GRR +RR G RG R      CG          G GA  G   G      
Sbjct: 63  GSGRRGRRRSGGRRPKRRGG-RGRRG-----CGEAE-------GGGAEVGGGPGRRRRRT 109

Query: 262 GQQRRIAAAAQRAASCK*RRR---RRQRAGAGW--ERAGGHPRHARSSAGARGCEGGCCR 426
           G +RR    +  A+S   RR+   RR R   GW  ERA G   + R  + A    G  C 
Sbjct: 110 GARRRRRRESDVASSNPARRKGGERRNRTEEGWKGERAAGEEENRRGRSAAINVAGEIC- 168

Query: 427 FGGCSCSCGRGRRGQR*PWVKRVAAER 507
            GG S       RG++  W KR    R
Sbjct: 169 -GGKSAHLNSRERGKK--WGKRERGSR 192

 Score = 39.7 bits (91), Expect = 0.027
 Identities = 43/133 (32%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
 Frame = +1

Query: 139 GLRGSRAVQPAVCGAV--RPA-GQPGAGPGAAAGDVRGAAADAAGQQRRIAAAAQRAASC 309
           G    R   PA  GA   RP  G+ G       G  RG   D  G +             
Sbjct: 9   GAPAPRWSPPATTGAAEQRPREGREGGKEATVHGSPRGDGGDGGGGRSG----------- 57

Query: 310 K*RRRRRQRAGAGWERAGGHPRHARSSAGARGC---EGGCCRFGGCSCSCGRGRRGQR*P 480
              RR R     G  R+GG     R   G RGC   EGG    GG     G GRR     
Sbjct: 58  --GRRWRGSGRRGRRRSGGRRPKRRGGRGRRGCGEAEGGGAEVGG-----GPGRRR---- 106

Query: 481 WVKRVAAERRRRR 519
             +R  A RRRRR
Sbjct: 107 --RRTGARRRRRR 117



EST assemble image


clone accession position
1 LCL034a11_r AV627930 1 288
2 HCL039c06_r AV641718 84 554




Chlamydomonas reinhardtii
Kazusa DNA Research Institute