KCC002455A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002455A_C01 KCC002455A_c01
GACGATCCATAACTAAAAGCATATCCAACGGCCCACCAGCAGATGGCGCAGAGCAAGATG
TTGACCGTGTTTTTGAGCAAAATGTTCTTGACGTTCTTAGAGCGGCCGTATCCCACTTCT
AAGGACACGAAGCCGACCTGTAGAAAGAATACAATGGCCCCCTGGATGATTAGCAGGTCG
CTGTAGGTAGCTCCATGGTCAATCGCCGTCGCCGAGGGCGTCGACGACATAGCGCCGACT
GCCTCTCCCTGCTTGGCAGCAGCGTCCTTTGAATTCCCGCTGAGTTTATTGCGTCATCAC
ATCAACTTGCTCGGATTGAAAACTCAGTTGGGGAGCATGTGAAGCCCGCCCACGCAGCCG
AAAAGTCAGCGCCCGAGGTGTCCACGGCCAATGGCAGCAATCACAGAGGTGCGCCTTGGT
GTGCTTAAAATATAGCTTGAGCCAAGGGCTCCCTTAATGAGCAGTGCAGGAATGCCAGGT
TGCAGGGAAGCAAGAACTTCAGGAGCGCTTATTTCTACTGGTCCGATGTAATCTGTGAAA
ATGATAGAACACGTTATCACGACTTGTGGCCGTCTAGGCTGCGAGGGCGGGAAAACCGGC
AGGCCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002455A_C01 KCC002455A_c01
         (607 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00020827.1| hypothetical protein [Chloroflexus aurantiacus]     67  3e-10
dbj|BAC07553.1| ammonium transporter AmtC [Dictyostelium discoid...    64  1e-09
gb|AAP47147.1| ammonium transport protein C [Dictyostelium disco...    64  1e-09
ref|NP_508784.1| AMmonium Transporter homolog (58.4 kD) (amt-1) ...    61  1e-08
ref|NP_680979.1| ammonium/methylammonium permease [Thermosynecho...    60  2e-08

>ref|ZP_00020827.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 471

 Score = 66.6 bits (161), Expect = 3e-10
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = -3

Query: 173 LIIQGAIVFFLQVGFVSLEVGYGRSKNVKNILLKNTVNILLCAICWWAVGYAFSYGS 3
           LI+  A+VFF+Q GF  L  G  RSKN  NIL KN ++ ++C+I +WAVG+  +YG+
Sbjct: 47  LIVAAALVFFMQAGFAMLTAGLTRSKNTTNILFKNLMDFVMCSIAFWAVGWGIAYGT 103

>dbj|BAC07553.1| ammonium transporter AmtC [Dictyostelium discoideum]
          Length = 431

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
 Frame = -3

Query: 224 STPSATAIDHGATYS-------DLLIIQGAIVFFLQVGFVSLEVGYGRSKNVKNILLKNT 66
           ST S+ + D  + YS         ++    +VFF+Q GF  LE G  R+KN K+ILLKN 
Sbjct: 5   STSSSESSDSSSEYSLEFYMDTSWVLDAANLVFFMQAGFGMLEAGMVRAKNTKSILLKNL 64

Query: 65  VNILLCAICWWAVGYAFSYG 6
           +N  +CAI ++ VG++F+YG
Sbjct: 65  INTAICAISYYCVGHSFAYG 84

>gb|AAP47147.1| ammonium transport protein C [Dictyostelium discoideum]
          Length = 427

 Score = 64.3 bits (155), Expect = 1e-09
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
 Frame = -3

Query: 224 STPSATAIDHGATYS-------DLLIIQGAIVFFLQVGFVSLEVGYGRSKNVKNILLKNT 66
           ST S+ + D  + YS         ++    +VFF+Q GF  LE G  R+KN K+ILLKN 
Sbjct: 5   STSSSESSDSSSEYSLEFYMDTSWVLDAANLVFFMQAGFGMLEAGMVRAKNTKSILLKNL 64

Query: 65  VNILLCAICWWAVGYAFSYG 6
           +N  +CAI ++ VG++F+YG
Sbjct: 65  INTAICAISYYCVGHSFAYG 84

>ref|NP_508784.1| AMmonium Transporter homolog (58.4 kD) (amt-1) [Caenorhabditis
           elegans] gi|1703293|sp|P54145|AMT1_CAEEL Putative
           ammonium transporter C05E11.4 gi|7495449|pir||T15414
           hypothetical protein C05E11.4 - Caenorhabditis elegans
           gi|1255843|gb|AAA96191.1| Ammonium transporter homolog
           protein 1 [Caenorhabditis elegans]
          Length = 534

 Score = 61.2 bits (147), Expect = 1e-08
 Identities = 28/59 (47%), Positives = 38/59 (63%)
 Frame = -3

Query: 182 SDLLIIQGAIVFFLQVGFVSLEVGYGRSKNVKNILLKNTVNILLCAICWWAVGYAFSYG 6
           S  L     I+FF+Q GF  LE G  RSKN  NIL+KN ++  +C I +WA+G+A +YG
Sbjct: 31  SFFLCSMALIIFFMQCGFAYLEAGAVRSKNTTNILIKNLLDSCICIIGYWAIGWALAYG 89

>ref|NP_680979.1| ammonium/methylammonium permease [Thermosynechococcus elongatus
           BP-1] gi|22293909|dbj|BAC07741.1|
           ammonium/methylammonium permease [Thermosynechococcus
           elongatus BP-1]
          Length = 507

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 29/86 (33%), Positives = 47/86 (53%)
 Frame = -3

Query: 263 AAAKQGEAVGAMSSTPSATAIDHGATYSDLLIIQGAIVFFLQVGFVSLEVGYGRSKNVKN 84
           A A  G+   A ++ P    +     +   +I+ G +VFF+  GF  LE G+ R+KN  N
Sbjct: 41  ATAALGQDTAASAAVPEKVQVALNTLW---VILAGVLVFFMNAGFGMLETGFCRAKNAVN 97

Query: 83  ILLKNTVNILLCAICWWAVGYAFSYG 6
           +L KN +   L +I +WA+G+A  +G
Sbjct: 98  LLSKNLIVFALASISYWAIGFALMFG 123



EST assemble image


clone accession position
1 MXL007a10_r BP093337 1 525
2 HCL038e01_r AV641671 394 607




Chlamydomonas reinhardtii
Kazusa DNA Research Institute