Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002453A_C01 KCC002453A_c01
(740 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultiva... 45 0.001
ref|NP_825327.1| putative DNA polymerase III gamma subunit [Stre... 44 0.002
ref|ZP_00007651.1| COG0532: Translation initiation factor 2 (IF-... 44 0.003
ref|NP_294953.1| hypothetical protein [Deinococcus radiodurans] ... 44 0.003
gb|AAK53449.1| unknown [Streptomyces aureofaciens] 43 0.005
>emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultivar-group)]
Length = 508
Score = 45.4 bits (106), Expect = 0.001
Identities = 32/89 (35%), Positives = 40/89 (43%)
Frame = -2
Query: 637 PSARPQPARSPWRRSGLAPGSRSPPR**LWRWSWAQAAVAGRPATSAGSSSRALSC*SPH 458
PS+ P PA S + AP R+PP A A PAT++ SS R +P
Sbjct: 40 PSSSPAPAASSATPAARAPSQRTPPT------PATPAKAASPPATNSSSSPR-----TPA 88
Query: 457 *SAPAPPCPVA*WAAARTRRRPPPWPPPP 371
AP PP P + A T+ PP P PP
Sbjct: 89 APAPRPPQPPPATSPAPTKPSSPPAPKPP 117
>ref|NP_825327.1| putative DNA polymerase III gamma subunit [Streptomyces avermitilis
MA-4680] gi|29607805|dbj|BAC71862.1| putative DNA
polymerase III gamma subunit [Streptomyces avermitilis
MA-4680]
Length = 846
Score = 44.3 bits (103), Expect = 0.002
Identities = 43/131 (32%), Positives = 54/131 (40%), Gaps = 2/131 (1%)
Frame = -2
Query: 733 PAWAARTA-RGRSGAPRAQPRRRRPRPRLACSWPSARPQPARSPWRRSGLAPGSRSPPR* 557
PA AA A + + P+ QP + P+P P+A P PA W + A R P
Sbjct: 498 PAEAAPPASQPTAEQPQPQPPAQ-PQPHTQPQAPAAAPAPAPGAWPTASAAGSGRRP--- 553
Query: 556 *LWRWSWAQAAVAGRPATSAGSSSRALSC*SP-H*SAPAPPCPVA*WAAARTRRRPPPWP 380
W A A G+P T A ++S A P SAPAP P AAA P P
Sbjct: 554 --GGWPTATPAGGGQPQTPAAAASAAPPASGPAPASAPAPSAPAPAPAAAYAPAAGGPDP 611
Query: 379 PPPWGSSRSAV 347
W + AV
Sbjct: 612 RMLWPNILEAV 622
>ref|ZP_00007651.1| COG0532: Translation initiation factor 2 (IF-2; GTPase)
[Rhodobacter sphaeroides]
Length = 635
Score = 43.9 bits (102), Expect = 0.003
Identities = 58/212 (27%), Positives = 66/212 (30%), Gaps = 26/212 (12%)
Frame = +3
Query: 177 GRSTSASSGVQIRNVPAS-WSSGATWANAGHTARVSPSKCTGLACPTASKCSQASQAATA 353
G S +A SG+ W SG ARV L C + S A
Sbjct: 44 GPSAAAGSGIARSGADLRRWRSGRGGLPRARGARVRAD----LQCARSRDASSGGAAGPV 99
Query: 354 DRELPHGGGG----HGGGRRRVRAAAHHATGHGGAGADQCGLQQDNARLLLPADVAGRPA 521
G G G RR R HA+G GAG C L L P A RP+
Sbjct: 100 -----RGRSGLPRQPAAGSRRARGGILHASGPRGAG---CALPSRGLGLARPPLPAERPS 151
Query: 522 TAACAQD-------------QRHSHQRGGDREPGARPDLRHGDRA--------G*GRAEG 638
C Q + Q GG R LR G R G RA
Sbjct: 152 AGPCRHGGPQCAERLAADGAQHRAGQHGGQRLLARHARLRGGGRGRLPRHRRLGGDRAVP 211
Query: 639 QLQASLGRGRLRRGCARGAPERPRAVRAAHAG 734
+ G R GC R A +R RAA G
Sbjct: 212 HARPGGAGGARRAGCGRPAAQRGPRARAADGG 243
>ref|NP_294953.1| hypothetical protein [Deinococcus radiodurans]
gi|7472709|pir||F75420 hypothetical protein -
Deinococcus radiodurans (strain R1)
gi|6458982|gb|AAF10810.1|AE001971_10 hypothetical
protein [Deinococcus radiodurans]
Length = 319
Score = 43.9 bits (102), Expect = 0.003
Identities = 45/147 (30%), Positives = 51/147 (34%), Gaps = 27/147 (18%)
Frame = +2
Query: 374 WWRPWGRAAAGSCRCPSRDWAWRRRRRSVWASTR*RSTA---TTRRRGRAPRYSCLCPR- 541
W W A+ C +R R+RRR W S+ S TTR R R S L
Sbjct: 133 WCGGWRAASTSGSSCAAR----RKRRRRHWGSSGPSSGCSANTTRARHAPARSSPLASTG 188
Query: 542 --PAPQSSARW*SRTWCETRSTPRRSCRLRTRR----RPTTSQPRP-------------- 661
PA R SR WC S R + R S P+P
Sbjct: 189 HSPAASGWGRSPSRNWCGAARPSVSSGRATSTRCWPAASANSVPKPPSSPRSVRAGTRWG 248
Query: 662 ---WTPPARLCPRRT*TTPSCSCCPCR 733
WTP A PR T T SCS P R
Sbjct: 249 CCTWTPGAPAAPRATTTRNSCSHSPSR 275
>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
Length = 579
Score = 43.1 bits (100), Expect = 0.005
Identities = 48/148 (32%), Positives = 56/148 (37%), Gaps = 16/148 (10%)
Frame = -2
Query: 736 GPAWAARTARGRSGAPRAQPRRRR-----------PRPRLACSWPSA-----RPQPARSP 605
GPA R+A GR+ RA+ R R P P+A RPQ AR P
Sbjct: 347 GPAGPRRSAPGRARRIRARGSRCRCCRGAGVEPEGPANGAGAGRPTATSGYARPQHARPP 406
Query: 604 WRRSGLAPGSRSPPR**LWRWSWAQAAVAGRPATSAGSSSRALSC*SPH*SAPAPPCPVA 425
R PG R P R + A RPA+ P +PAP P
Sbjct: 407 ARAP---PGPRPAPT----RAASTPARTGSRPASPPTR---------PTAPSPAPAAPPR 450
Query: 424 *WAAARTRRRPPPWPPPPWGSSRSAVAA 341
AA RRPPP P PP +R AA
Sbjct: 451 AAAAPTPARRPPPPPTPPVPRARRGPAA 478
Score = 38.5 bits (88), Expect = 0.11
Identities = 42/124 (33%), Positives = 53/124 (41%), Gaps = 3/124 (2%)
Frame = -2
Query: 733 PAWAARTARGRSGAPRAQPRRRRPRPRLACSWP---SARPQPARSPWRRSGLAPGSRSPP 563
P AA T R+G+ A P R P A + P +A P PAR P P +PP
Sbjct: 417 PTRAASTP-ARTGSRPASPPTRPTAPSPAPAAPPRAAAAPTPARRP-------PPPPTPP 468
Query: 562 R**LWRWSWAQAAVAGRPATSAGSSSRALSC*SPH*SAPAPPCPVA*WAAARTRRRPPPW 383
+ R AA GRP ++ ++ + SP P P PV R RR PPP
Sbjct: 469 ---VPRARRGPAAGNGRPPSTRDRTAGTRAPASP----PGAPPPV------RRRRPPPPR 515
Query: 382 PPPP 371
PPP
Sbjct: 516 APPP 519
Score = 35.0 bits (79), Expect = 1.2
Identities = 40/136 (29%), Positives = 53/136 (38%), Gaps = 8/136 (5%)
Frame = -2
Query: 739 RGPAWAARTARGRSGAPRAQPRRRRPRPRL-----ACSWPSARPQPARSP---WRRSGLA 584
R + ART R +P +P P P A P+ RP P +P R G A
Sbjct: 419 RAASTPARTG-SRPASPPTRPTAPSPAPAAPPRAAAAPTPARRPPPPPTPPVPRARRGPA 477
Query: 583 PGSRSPPR**LWRWSWAQAAVAGRPATSAGSSSRALSC*SPH*SAPAPPCPVA*WAAART 404
G+ PP + + A PA+ G+ P AP P P A +AR
Sbjct: 478 AGNGRPPS------TRDRTAGTRAPASPPGAPPPVRRRRPPPPRAPPPHHPSARNPSARA 531
Query: 403 RRRPPPWPPPPWGSSR 356
RP P PP P ++R
Sbjct: 532 TPRPRP-PPRPSAAAR 546
