KCC002451A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002451A_C01 KCC002451A_c01
caagataataCAGTACTGTATACAGTATTTGACGTTGCTACGTTTGCAGCTTTCCCGACT
TCGTAACTTTTGTCCTCTTGCGTCGCTCCTTTTGAACCAGACTTTAGTCTAACACATTAT
TTGCCGCGCTTGGTTGCACTGCAATCACATGAGTTAGCGGAGCCAACGCAGGCGCGCAGC
GCTCAGAAAACATCCATGGCCTCCGAGAGCGACGACGAGCAACTCGGATTGCTGAAAGCT
GCTCTTGGCGGCAGCGACCAGGAGGCGGTGGTCGACAGCGACCCCGGCAGTGACCCGGAG
CGCGACTACTCCAAGGGCCTTGCGCAGCGGGCCACCGACCCGTACTTTAAACAGCGCAAG
GCGAAGGGCGCATTTGTGTACGTGAAGCAGGCCAACAAGACGGGTCGCCACTTCTACGTG
AACGAGGAAGTGGACAGGCTCAAAGCCAAGCGCGATGCAGACAAGATACGCGAGCTACTA
AAACGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002451A_C01 KCC002451A_c01
         (486 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_322170.1| hypothetical protein [Neurospora crassa] gi|289...    38  0.056
ref|XP_302560.1| hypothetical protein XP_302560 [Homo sapiens]         37  0.13
dbj|BAB30438.1| unnamed protein product [Mus musculus]                 37  0.16
dbj|BAC10395.1| hypothetical protein [Oryza sativa (japonica cul...    37  0.16
gb|AAH30687.1| ZNF318 protein [Homo sapiens]                           36  0.21

>ref|XP_322170.1| hypothetical protein [Neurospora crassa] gi|28918296|gb|EAA27972.1|
           hypothetical protein [Neurospora crassa]
          Length = 853

 Score = 38.1 bits (87), Expect = 0.056
 Identities = 31/94 (32%), Positives = 43/94 (44%), Gaps = 5/94 (5%)
 Frame = +2

Query: 200 PPRATTSNSDC*KLLLAAATRRRWSTATPAVTRSATTPRA-----LRSGPPTRTLNSARR 364
           PP +T   S    L+ A A RR  +TA P +  +  TP+A     LRS P  +  NSA  
Sbjct: 353 PPPSTPGKSRPQSLISANALRRSPATAKPEIATTGGTPKAVTGTGLRSSPAHKRQNSAS- 411

Query: 365 RAHLCT*SRPTRRVATST*TRKWTGSKPSAMQTR 466
                  S  T  +AT+T T + T    +  QT+
Sbjct: 412 -------SVSTTNIATTTGTTERTAVSTTTTQTQ 438

>ref|XP_302560.1| hypothetical protein XP_302560 [Homo sapiens]
          Length = 380

 Score = 37.0 bits (84), Expect = 0.13
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
 Frame = -3

Query: 427 PRSRRSGDPSCWPASRTQMRPSPCAV*STGRWPAAQGP-------WSSRAPG------HC 287
           P++ R+GDP         +RP+P       R P A+GP       W+   PG      H 
Sbjct: 159 PQAGRAGDPEADQGQEPALRPNPGGC----RGPLARGPQLQQRRSWAGAGPGGLSGQVHS 214

Query: 286 RGRCRP---PPPGR--CRQ 245
           R R  P   PPPGR  CR+
Sbjct: 215 RSRGSPGHSPPPGRPSCRR 233

>dbj|BAB30438.1| unnamed protein product [Mus musculus]
          Length = 392

 Score = 36.6 bits (83), Expect = 0.16
 Identities = 24/71 (33%), Positives = 30/71 (41%)
 Frame = +1

Query: 70  LSSCVAPFEPDFSLTHYLPRLVALQSHELAEPTQARSAQKTSMASESDDEQLGLLKAALG 249
           +S   AP  PDF   H+ P LV +  H L    Q       S +S S+         A G
Sbjct: 200 VSRVAAPSLPDFKNKHFRPDLVKMDDHSLGVAVQTSERNLLSSSSISNVYLRQKPSLAQG 259

Query: 250 GSDQEAVVDSD 282
           GSD   V+ SD
Sbjct: 260 GSDTMDVIRSD 270

>dbj|BAC10395.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 89

 Score = 36.6 bits (83), Expect = 0.16
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +3

Query: 153 VSGANAGAQRSENIHGLRERRRATRIAESCSWRQRPGGGGRQRPRQ 290
           V+G   G+ R+  +H    RRR  R A +   +QR GGGGR+ PR+
Sbjct: 22  VAGVLFGSSRTRRLHQRARRRREARSA-AARRQQRRGGGGREMPRE 66

>gb|AAH30687.1| ZNF318 protein [Homo sapiens]
          Length = 1117

 Score = 36.2 bits (82), Expect = 0.21
 Identities = 31/77 (40%), Positives = 36/77 (46%)
 Frame = -3

Query: 427 PRSRRSGDPSCWPASRTQMRPSPCAV*STGRWPAAQGPWSSRAPGHCRGRCRPPPPGRCR 248
           PRS RS   S  PA R+   P P    S+ R PA +     R+P   RGR   P P R R
Sbjct: 23  PRSGRSSGSSSGPARRSSPPPPPSG--SSSRTPARR----PRSPSGHRGRRASPSPPRGR 76

Query: 247 QEQLSAIRVARRRSRRP 197
           +   S  R ARR S  P
Sbjct: 77  RVSPSPPR-ARRGSPSP 92



EST assemble image


clone accession position
1 LCL060b12_r AV629521 1 401
2 HCL037h12_r AV641643 11 486




Chlamydomonas reinhardtii
Kazusa DNA Research Institute