Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002450A_C01 KCC002450A_c01
(514 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix prote... 41 4e-06
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-... 41 4e-06
gb|AAH36187.1| SRRM1 protein [Homo sapiens] 37 5e-06
ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty ... 36 2e-05
pir||C41132 collagen-related protein 3 precursor - Hydra magnipa... 49 4e-05
>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
plenty-of-prolines-101; serine/arginine repetitive
matrix protein 1 [Rattus norvegicus]
Length = 958
Score = 40.8 bits (94), Expect(2) = 4e-06
Identities = 25/53 (47%), Positives = 26/53 (48%)
Frame = -2
Query: 483 RHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*SRGR 325
R R RSR R PRRR P P RR P +R P P R R R PG R R
Sbjct: 356 RRRHRSRSRSYSPRRR-PSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRR 407
Score = 37.0 bits (84), Expect(2) = 9e-05
Identities = 24/68 (35%), Positives = 32/68 (46%), Gaps = 1/68 (1%)
Frame = -2
Query: 510 PSRAYAWPVRHRRRSRRRRRRPRRRRPPPSRRGQ-PGQRDPQPIQPGQQRQ*RPRKPG*S 334
PSR+ + R R++ RRR R PPP+RR + P P P P +R+ P P
Sbjct: 574 PSRSASPSPRKRQKETSPRRRRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRR 633
Query: 333 RGRGMPDR 310
R P R
Sbjct: 634 RTPSPPPR 641
Score = 32.3 bits (72), Expect(2) = 0.53
Identities = 24/66 (36%), Positives = 26/66 (39%)
Frame = -2
Query: 513 PPSRAYAWPVRHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*S 334
PP R P RR R PRRR P P R P QR P P ++R P P
Sbjct: 619 PPPRRRRSPTPPPRR-RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 677
Query: 333 RGRGMP 316
R P
Sbjct: 678 RASPSP 683
Score = 31.2 bits (69), Expect = 8.0
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -2
Query: 507 SRAYA---WPVRHRRRSRRRRRRPRRRRPPPSRR--GQPGQR 397
SR+Y+ P RR S RRR PRR PPP R PG+R
Sbjct: 363 SRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRR 404
Score = 30.8 bits (68), Expect(2) = 4e-06
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Frame = -3
Query: 344 RGRAGAEGCPTGTAECRPSAAGRGTPSAPAPPP*RSGRLAP--EPPRRGQQPSPGA 183
R A G + ++ R + + P + PP ++ RL+P PPRR +PS A
Sbjct: 407 RSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPA 462
Score = 30.8 bits (68), Expect(2) = 0.15
Identities = 17/38 (44%), Positives = 20/38 (51%), Gaps = 3/38 (7%)
Frame = -3
Query: 293 PSAAGRGTPSA---PAPPP*RSGRLAPEPPRRGQQPSP 189
P A R +PS P PPP R +P PP R + PSP
Sbjct: 601 PPARRRRSPSPAPPPPPPPPPRRRRSPTPPPRRRTPSP 638
Score = 30.0 bits (66), Expect(2) = 9e-05
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 263 APAPPP*RSGRLAPEPPRRGQQPSP 189
+P+PPP R P PP+R PSP
Sbjct: 659 SPSPPPKRRTASPPPPPKRRASPSP 683
Score = 25.0 bits (53), Expect(2) = 0.15
Identities = 15/40 (37%), Positives = 18/40 (44%)
Frame = -2
Query: 444 RRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*SRGR 325
RRRR PSR P R Q ++R+ P P R R
Sbjct: 568 RRRRHSPSRSASPSPRKRQKETSPRRRRRSPSPPPARRRR 607
Score = 21.6 bits (44), Expect(2) = 0.53
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 266 SAPAPPP*RSGRLAPEPPRRGQQP 195
++P+PPP R R++ PP + + P
Sbjct: 679 ASPSPPPKR--RVSHSPPPKQRSP 700
>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
serine/arginine repetitive matrix protein 1 [Mus
musculus] gi|3153821|gb|AAC17422.1|
plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 40.8 bits (94), Expect(2) = 4e-06
Identities = 25/53 (47%), Positives = 26/53 (48%)
Frame = -2
Query: 483 RHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*SRGR 325
R R RSR R PRRR P P RR P +R P P R R R PG R R
Sbjct: 297 RRRHRSRSRSYSPRRR-PSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRR 348
Score = 32.3 bits (72), Expect(2) = 0.41
Identities = 24/66 (36%), Positives = 26/66 (39%)
Frame = -2
Query: 513 PPSRAYAWPVRHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*S 334
PP R P RR R PRRR P P R P QR P P ++R P P
Sbjct: 584 PPPRRRRSPTPPPRR-RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 642
Query: 333 RGRGMP 316
R P
Sbjct: 643 RASPSP 648
Score = 31.2 bits (69), Expect = 8.0
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = -2
Query: 507 SRAYA---WPVRHRRRSRRRRRRPRRRRPPPSRR--GQPGQR 397
SR+Y+ P RR S RRR PRR PPP R PG+R
Sbjct: 304 SRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRR 345
Score = 30.8 bits (68), Expect(2) = 4e-06
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Frame = -3
Query: 344 RGRAGAEGCPTGTAECRPSAAGRGTPSAPAPPP*RSGRLAP--EPPRRGQQPSPGA 183
R A G + ++ R + + P + PP ++ RL+P PPRR +PS A
Sbjct: 348 RSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPA 403
Score = 30.4 bits (67), Expect(2) = 0.033
Identities = 17/39 (43%), Positives = 20/39 (50%), Gaps = 4/39 (10%)
Frame = -3
Query: 293 PSAAGRGTPSA----PAPPP*RSGRLAPEPPRRGQQPSP 189
P A R +PS P PPP R +P PP R + PSP
Sbjct: 565 PPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSP 603
Score = 30.0 bits (66), Expect(2) = 0.033
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 263 APAPPP*RSGRLAPEPPRRGQQPSP 189
+P+PPP R P PP+R PSP
Sbjct: 624 SPSPPPKRRTASPPPPPKRRASPSP 648
Score = 28.1 bits (61), Expect(2) = 0.033
Identities = 17/43 (39%), Positives = 19/43 (43%)
Frame = -2
Query: 471 RSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKP 343
+S RRRR P PP RR P P P P R+ R P
Sbjct: 554 KSSRRRRSPSP--PPARRRRSPSPAPPPPPPPPPPRRRRSPTP 594
Score = 27.7 bits (60), Expect(2) = 0.033
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -2
Query: 486 VRHRRR---SRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*SRGR 325
V RRR SR PR+R+ S R Q G+R P+ +R+ P P R R
Sbjct: 515 VGRRRRLSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPPPARRRR 571
Score = 21.9 bits (45), Expect(2) = 0.41
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 266 SAPAPPP*RSGRLAPEPPRRGQQPS 192
++P+PPP R R++ PP + + P+
Sbjct: 644 ASPSPPPKR--RVSHSPPPKQRSPT 666
>gb|AAH36187.1| SRRM1 protein [Homo sapiens]
Length = 904
Score = 37.4 bits (85), Expect(2) = 5e-06
Identities = 22/47 (46%), Positives = 23/47 (48%)
Frame = -2
Query: 483 RHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKP 343
R R RSR R PRRR P P RR P +R P P R R R P
Sbjct: 299 RRRHRSRSRSYSPRRR-PSPRRRPSPRRRTPPRRMPPPPRHRRSRSP 344
Score = 33.9 bits (76), Expect(2) = 5e-06
Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Frame = -3
Query: 344 RGRAGAEGCPTGTAECRPSAAGRGTPSAPAPPP*RSGRLAP--EPPRRGQQPSPGA 183
R A G + ++ R + + P + PP ++ RL+P PPRR +PSP A
Sbjct: 350 RSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPA 405
Score = 33.1 bits (74), Expect = 2.1
Identities = 41/131 (31%), Positives = 45/131 (34%), Gaps = 5/131 (3%)
Frame = -2
Query: 513 PPSRAYAWPVRHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*S 334
PP R P RR R PRRR P P R P QR P P ++R P P
Sbjct: 565 PPPRRRRTPTPPPRR-RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 623
Query: 333 RGRGMPDRNC*V-----PSFGSG*GNAFGTGSSSMKVRAACS*TSSTGAAAFTGRIGRRD 169
R P V P S + S S K R S + ST A R
Sbjct: 624 RASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHS 683
Query: 168 RGPRTGAPGIS 136
PR AP S
Sbjct: 684 PSPRPRAPQTS 694
Score = 32.7 bits (73), Expect = 2.8
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = -3
Query: 386 RSSQASSANSGQGSRGRAGAEGCPTGTAECRPS---AAGRGTPSAPAPPP*RSGRLAPEP 216
R + S + S S + E P G PS R +PS PAPPP R R P P
Sbjct: 519 RRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPS-PAPPPRR--RRTPTP 575
Query: 215 PRRGQQPSP 189
P R + PSP
Sbjct: 576 PPRRRTPSP 584
Score = 32.0 bits (71), Expect = 4.7
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 510 PSR-AYAWPVRHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*S 334
PSR A P + ++ + R RR R PPP+RR +R P P P ++R+ P P
Sbjct: 525 PSRSASPSPRKRQKETSPRGRRRRSPSPPPTRR----RRSPSPAPPPRRRR-TPTPPPRR 579
Query: 333 RGRGMPDR 310
R P R
Sbjct: 580 RTPSPPPR 587
>ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty of prolines 101-l;
Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-like) [Homo sapiens]
gi|3005587|gb|AAC09321.1| Ser/Arg-related nuclear matrix
protein [Homo sapiens]
gi|33150824|gb|AAP97290.1|AF419855_1 Ser/Arg-related
nuclear matrix protein [Homo sapiens]
Length = 820
Score = 35.8 bits (81), Expect(2) = 2e-05
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = -2
Query: 483 RHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKP 343
R RRR R + RRRP P RR P +R P P R R R P
Sbjct: 297 RPRRRHRSDKMYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSP 343
Score = 33.9 bits (76), Expect(2) = 2e-05
Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Frame = -3
Query: 344 RGRAGAEGCPTGTAECRPSAAGRGTPSAPAPPP*RSGRLAP--EPPRRGQQPSPGA 183
R A G + ++ R + + P + PP ++ RL+P PPRR +PSP A
Sbjct: 349 RSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPA 404
Score = 33.1 bits (74), Expect = 2.1
Identities = 41/131 (31%), Positives = 45/131 (34%), Gaps = 5/131 (3%)
Frame = -2
Query: 513 PPSRAYAWPVRHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*S 334
PP R P RR R PRRR P P R P QR P P ++R P P
Sbjct: 563 PPPRRRRTPTPPPRR-RTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKR 621
Query: 333 RGRGMPDRNC*V-----PSFGSG*GNAFGTGSSSMKVRAACS*TSSTGAAAFTGRIGRRD 169
R P V P S + S S K R S + ST A R
Sbjct: 622 RASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHS 681
Query: 168 RGPRTGAPGIS 136
PR AP S
Sbjct: 682 PSPRPRAPQTS 692
Score = 32.7 bits (73), Expect = 2.8
Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = -3
Query: 386 RSSQASSANSGQGSRGRAGAEGCPTGTAECRPS---AAGRGTPSAPAPPP*RSGRLAPEP 216
R + S + S S + E P G PS R +PS PAPPP R R P P
Sbjct: 517 RRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPS-PAPPPRR--RRTPTP 573
Query: 215 PRRGQQPSP 189
P R + PSP
Sbjct: 574 PPRRRTPSP 582
Score = 32.0 bits (71), Expect = 4.7
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 510 PSR-AYAWPVRHRRRSRRRRRRPRRRRPPPSRRGQPGQRDPQPIQPGQQRQ*RPRKPG*S 334
PSR A P + ++ + R RR R PPP+RR +R P P P ++R+ P P
Sbjct: 523 PSRSASPSPRKRQKETSPRGRRRRSPSPPPTRR----RRSPSPAPPPRRRR-TPTPPPRR 577
Query: 333 RGRGMPDR 310
R P R
Sbjct: 578 RTPSPPPR 585
>pir||C41132 collagen-related protein 3 precursor - Hydra magnipapillata
gi|9451|emb|CAA43381.1| mini-collagen [Hydra sp.]
Length = 186
Score = 48.9 bits (115), Expect = 4e-05
Identities = 40/122 (32%), Positives = 44/122 (35%)
Frame = +1
Query: 118 PQPARSAYAGRAGARTPVSAPYAPGEGCCPRRGGSGASRPDLHGGGAGAEGVPLPAAEGR 297
P P Y G GA P+ P PG CP G P GG G G+P P
Sbjct: 79 PPPPPPPYPGPPGAPGPMGPPGGPG---CP-----GPQGPPGPPGGPGGPGMPGPPG--- 127
Query: 298 HSAVPVGHPSAPALPRLPWPLLALLAWLDRLWVALPRLTPA*RRWPPTAWPPSPPPRXST 477
P G P PA P P P + L + P P PP PP PPP S
Sbjct: 128 ----PPGPPGIPAPPAPPPPPICLHHCMKICPAPAPACVP-----PPPPPPPPPPPACSC 178
Query: 478 VP 483
P
Sbjct: 179 YP 180
