Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002449A_C01 KCC002449A_c01
(409 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02497.1| gene_id:MOE17.21~ref|NP_002083.1~similar to unkn... 52 2e-06
ref|NP_188725.1| heterogeneous nuclear ribonucleoprotein (hnRNP)... 52 2e-06
ref|NP_741422.1| ribonucleoprotein (66.7 kD) (4H138) [Caenorhabd... 48 4e-05
dbj|BAC86863.1| unnamed protein product [Homo sapiens] 46 1e-04
dbj|BAB10406.1| contains similarity to ribonucleoprotein F~gene_... 45 3e-04
>dbj|BAB02497.1| gene_id:MOE17.21~ref|NP_002083.1~similar to unknown protein
[Arabidopsis thaliana]
Length = 278
Score = 52.0 bits (123), Expect = 2e-06
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = +1
Query: 238 TAPDGVPSVPKSTVLRLRGLPFSAGEDDVRQFFADFEVA---TVVIGKRAGRSTGEGYVQ 408
++ DG + + +LRLRGLPFSAG++D+ FF DFE++ V GR TGE +V+
Sbjct: 178 SSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVE 237
Score = 42.4 bits (98), Expect = 0.002
Identities = 25/62 (40%), Positives = 33/62 (52%)
Frame = +1
Query: 217 NEHGFIETAPDGVPSVPKSTVLRLRGLPFSAGEDDVRQFFADFEVATVVIGKRAGRSTGE 396
N +GF+ AP P P +RLRGLPF E DV +FF +V V+ R + TGE
Sbjct: 29 NPYGFV--APPPPPPFP---AVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGE 83
Query: 397 GY 402
+
Sbjct: 84 AF 85
>ref|NP_188725.1| heterogeneous nuclear ribonucleoprotein (hnRNP), putative
[Arabidopsis thaliana]
Length = 350
Score = 52.0 bits (123), Expect = 2e-06
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = +1
Query: 238 TAPDGVPSVPKSTVLRLRGLPFSAGEDDVRQFFADFEVA---TVVIGKRAGRSTGEGYVQ 408
++ DG + + +LRLRGLPFSAG++D+ FF DFE++ V GR TGE +V+
Sbjct: 250 SSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVE 309
Score = 42.4 bits (98), Expect = 0.002
Identities = 25/62 (40%), Positives = 33/62 (52%)
Frame = +1
Query: 217 NEHGFIETAPDGVPSVPKSTVLRLRGLPFSAGEDDVRQFFADFEVATVVIGKRAGRSTGE 396
N +GF+ AP P P +RLRGLPF E DV +FF +V V+ R + TGE
Sbjct: 101 NPYGFV--APPPPPPFP---AVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGE 155
Query: 397 GY 402
+
Sbjct: 156 AF 157
>ref|NP_741422.1| ribonucleoprotein (66.7 kD) (4H138) [Caenorhabditis elegans]
gi|21240743|gb|AAM44389.1|AC084197_27 Hypothetical
protein Y73B6BL.33 [Caenorhabditis elegans]
Length = 610
Score = 47.8 bits (112), Expect = 4e-05
Identities = 22/48 (45%), Positives = 29/48 (59%)
Frame = +1
Query: 265 PKSTVLRLRGLPFSAGEDDVRQFFADFEVATVVIGKRAGRSTGEGYVQ 408
P+S +RLRGLPF+A E D+ +FFA + V GR GE YV+
Sbjct: 61 PRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVE 108
Score = 43.1 bits (100), Expect = 0.001
Identities = 27/63 (42%), Positives = 37/63 (57%), Gaps = 5/63 (7%)
Frame = +1
Query: 235 ETAPDGVPSVPKSTVLRLRGLPFSAGEDDVRQFFADFE--VATVVIGKRAG---RSTGEG 399
E PD + + V+RLRG+P+S EDDVR+FF E A +VIG G R +GE
Sbjct: 144 EFRPDPDSNGEVNHVIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEA 203
Query: 400 YVQ 408
+V+
Sbjct: 204 FVR 206
>dbj|BAC86863.1| unnamed protein product [Homo sapiens]
Length = 447
Score = 45.8 bits (107), Expect = 1e-04
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 277 VLRLRGLPFSAGEDDVRQFFADFEVA--TVVIGKRAGRSTGEGYVQ 408
V+RLRGLP+S E+D+ FFA + T V+ R R TGE YVQ
Sbjct: 218 VVRLRGLPYSCNEEDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQ 263
Score = 31.2 bits (69), Expect = 3.6
Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 1/43 (2%)
Frame = +1
Query: 280 LRLRGLPFSAGEDDVRQFFADFEVATVVIG-KRAGRSTGEGYV 405
+ +RGLPF A D+ FFA + + + +G++TGE V
Sbjct: 370 VHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADV 412
>dbj|BAB10406.1| contains similarity to ribonucleoprotein F~gene_id:K2A18.8
[Arabidopsis thaliana]
Length = 248
Score = 44.7 bits (104), Expect = 3e-04
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +1
Query: 181 VGQKREMAEETANEHGFIETAPDGVPSVPKS---TVLRLRGLPFSAGEDDVRQFFADFEV 351
VG KR+ ++ N + + T P P + V+RLRGLPF+ + D+ +FFA +
Sbjct: 9 VGSKRQRMMQS-NPYLAVGTGPTSFPPFGYAGGFPVVRLRGLPFNCADIDIFEFFAGLNI 67
Query: 352 ATVVIGKRAGRSTGEGYV 405
V++ + G+ +GE +V
Sbjct: 68 VDVLLVSKNGKFSGEAFV 85
Score = 38.5 bits (88), Expect = 0.022
Identities = 25/82 (30%), Positives = 43/82 (51%), Gaps = 13/82 (15%)
Frame = +1
Query: 202 AEETANEHGFIETAPDGVPSVPK----------STVLRLRGLPFSAGEDDVRQFFADFEV 351
AEE A E+ + P PS K + VL++RGLP+S + + +FF+ ++V
Sbjct: 125 AEEGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKV 184
Query: 352 ---ATVVIGKRAGRSTGEGYVQ 408
V+ + G++TGE +V+
Sbjct: 185 IQGRVQVVCRPDGKATGEAFVE 206
