KCC002447A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002447A_C01 KCC002447A_c01
gacatcaCCCGCCTCTTCACAGAAAGCAGTCCAATTACACAAATGGATACGTGGCTTGCA
AAGTTCAAGAAGCAAGACGAGCAGGCTGCGGTCGCGCTCGTGGCCCATGAGCAGCCCCTG
CAAGCACCAGTAGAGCAAGAACTAACCACGCCAAAGAAGAAGGGATATAAACTACCCTGG
CTGCCGGGACGGAAATGGCTCGCCATCGTTTTTATGGTGCTGTCCGTCGCCTCTATGGCT
ATCGGATTGGGAGTGGGCCTGGGCCTCGGCATGAAGAACACAACACATGATACGAGCCAG
ATCACGTCCGACGACTCGGACCTCGGCGCCCTGCGCATCAACCCCACCGCAATGTCGGCG
CTCTCGCTCAATTCCACAATGCTTGCGTCGGCCGCGTTGGTCAACGCTTCCAGCGCTGTC
GCTGCGGATGCGTTGACCGGCGACACGCCCGCGCCGTGCTCGCGGGAGGCGTACCTGCAG
GCCCGCACGCTGGTGGCGCACTCGCTCCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002447A_C01 KCC002447A_c01
         (510 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF43040.1|AF233430_1 EYE2 [Chlamydomonas reinhardtii]              47  2e-04
pir||S54834 HP8 peptide - human (fragment)                             40  0.013
emb|CAA60698.1| HP8 peptide [Homo sapiens]                             40  0.013
ref|XP_220207.2| similar to splicing coactivator subunit SRm300;...    40  0.017
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]                       40  0.022

>gb|AAF43040.1|AF233430_1 EYE2 [Chlamydomonas reinhardtii]
          Length = 503

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 34/101 (33%), Positives = 44/101 (42%), Gaps = 4/101 (3%)
 Frame = +2

Query: 215 WCCPSPLWLSDWEWAWASA*RTQHMIRARSRPTTRTSAPCASTPPQCRRSRSIPQCLRRP 394
           W C    W   W W W  A   +H      RP  + S PC   PPQ RR     +C RRP
Sbjct: 352 WGCCCARWAHAWRWCWGWAATRRH------RPQPQWSQPC--LPPQ-RRMLPPLRCRRRP 402

Query: 395 RWSTL---PALSLRMR*PATRPRRARGRRTCRP-ARWWRTR 505
           +  TL    ++  R+R    RP+    R+  R  +RWW  R
Sbjct: 403 QRLTLRRCRSMPQRLRRCQPRPQHWHPRQLLRRLSRWWSPR 443

>pir||S54834 HP8 peptide - human (fragment)
          Length = 200

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 37/96 (38%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
 Frame = +2

Query: 254 WAWASA*RTQHMIRARSRPTTRTSAPCASTPPQC---RRSRSIPQCL-------RRPRWS 403
           W W +   T    R R R  TRT  P    P  C    R+ + P C        RRPR  
Sbjct: 18  WRWPACSLTSRRRRRRPRTRTRTRRPRTWPPRTCSSRSRTAARPPCTCSPVTPRRRPR-- 75

Query: 404 TLPALSLRMR-*PATRP-RRAR--GRRTCRPARWWR 499
             PA + R R  PA RP +RA+  GRR  RP R WR
Sbjct: 76  PCPARTPRPRSVPACRPWQRAQGAGRRAPRPPREWR 111

>emb|CAA60698.1| HP8 peptide [Homo sapiens]
          Length = 341

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 37/96 (38%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
 Frame = +2

Query: 254 WAWASA*RTQHMIRARSRPTTRTSAPCASTPPQC---RRSRSIPQCL-------RRPRWS 403
           W W +   T    R R R  TRT  P    P  C    R+ + P C        RRPR  
Sbjct: 159 WRWPACSLTSRRRRRRPRTRTRTRRPRTWPPRTCSSRSRTAARPPCTCSPVTPRRRPR-- 216

Query: 404 TLPALSLRMR-*PATRP-RRAR--GRRTCRPARWWR 499
             PA + R R  PA RP +RA+  GRR  RP R WR
Sbjct: 217 PCPARTPRPRSVPACRPWQRAQGAGRRAPRPPREWR 252

>ref|XP_220207.2| similar to splicing coactivator subunit SRm300; RNA binding protein;
            AT-rich element binding factor [Rattus norvegicus]
          Length = 1971

 Score = 40.0 bits (92), Expect = 0.017
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
 Frame = +2

Query: 65   SRSKTSRLRSRSWPMSSPCKHQ*SKN*P--RQRRRDINYPGCRDGNGSPSFLWCCPSPLW 238
            SR+ T+R RSRS       +   S++ P  R+R R    P  R  + S +      SP+ 
Sbjct: 1148 SRTPTTRRRSRSRTPPVTRRRSRSRSPPVTRRRSRSRTSPVTRRRSRSRT------SPVT 1201

Query: 239  LSDWEWAWASA*RTQHMIRARSR----PTTRTSAPCASTPPQCRRSRSIPQCLRRPRWST 406
                     S  RT  + R RSR    P TR  +   + P   RRSRS    L R R  +
Sbjct: 1202 RR------RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRS 1255

Query: 407  LPALSLRMR*PATRPRRARGRRT 475
               L++R R  +  PR ARG+R+
Sbjct: 1256 RSPLAIRRRSRSRTPRAARGKRS 1278

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 50/156 (32%), Positives = 62/156 (39%), Gaps = 8/156 (5%)
 Frame = +2

Query: 65   SRSKT---SRLRSRSWPMSSPCKHQ*SKN*PRQRRRDINYPGCRDGNGSPSFLWCCPSPL 235
            SRS+T   SR RSRS   +SP   + S++  R+R R    P  R  + S           
Sbjct: 1090 SRSRTPLISRRRSRS--RTSPVSRRRSRSVNRRRSRSRASPVSRRRSRS----------- 1136

Query: 236  WLSDWEWAWASA*RTQHMIRARSR---PTTRTSAPCASTPPQCR--RSRSIPQCLRRPRW 400
                         RT  + R RSR   PTTR  +   + P   R  RSRS P   RR R 
Sbjct: 1137 -------------RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRSPPVTRRRSRS 1183

Query: 401  STLPALSLRMR*PATRPRRARGRRTCRPARWWRTRS 508
             T P    R R   +   R R R    P    R+RS
Sbjct: 1184 RTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS 1219

 Score = 37.0 bits (84), Expect = 0.14
 Identities = 54/177 (30%), Positives = 77/177 (42%), Gaps = 8/177 (4%)
 Frame = +2

Query: 2    TSPASSQKAVQLHKWIRGLQSSRSKTSRLRSRSWPMSSPCKHQ*SKN*P---RQRRRDIN 172
            TSP S +++  +++  R  +S  S  SR RSRS   + P   + S++     R+R R   
Sbjct: 1106 TSPVSRRRSRSVNR--RRSRSRASPVSRRRSRS--RTPPVTRRRSRSRTPTTRRRSRSRT 1161

Query: 173  YPGCRDGNGSPSFLWCCPSPLWLSDWEWAWASA*RTQHMIRARSRPTTRTSAPCASTPPQ 352
             P  R  + S S       P+              T+   R+R+ P TR  +   ++P  
Sbjct: 1162 PPVTRRRSRSRS------PPV--------------TRRRSRSRTSPVTRRRSRSRTSPVT 1201

Query: 353  CRRSRS--IPQCLRRPRWSTLPALSLRMR---*PATRPRRARGRRTCRPARWWRTRS 508
             RRSRS   P   RR R  T P    R R    PA R RR+R R    P +  R+RS
Sbjct: 1202 RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIR-RRSRSRTPLLPRKRSRSRS 1257

>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
          Length = 1754

 Score = 39.7 bits (91), Expect = 0.022
 Identities = 52/174 (29%), Positives = 74/174 (41%), Gaps = 5/174 (2%)
 Frame = +2

Query: 2    TSPASSQKAVQLHKWIRGLQSSRSKTSRLRSRSWPMSSPCKHQ*SKN*PRQRRRDINYPG 181
            TSP S +++  +++  R  +S  S  SR RSRS       +   S+   R+R R    P 
Sbjct: 899  TSPVSRRRSRSVNR--RRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRSRTPPV 956

Query: 182  CRDGNGSPSFLWCCPSPLWLSDWEWAWASA*RTQHMIRARSRPTTRTSAPCASTPPQCRR 361
             R  + S +       P+              T+   R+R+ P TR  +   ++P   RR
Sbjct: 957  TRRRSRSRT------PPV--------------TRRRSRSRTSPVTRRRSRSRTSPVTRRR 996

Query: 362  SRS--IPQCLRRPRWSTLPALSLRMR---*PATRPRRARGRRTCRPARWWRTRS 508
            SRS   P   RR R  T P    R R    PA R RR+R R    P +  R+RS
Sbjct: 997  SRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIR-RRSRSRTPLLPRKRSRSRS 1049

 Score = 39.3 bits (90), Expect = 0.029
 Identities = 24/66 (36%), Positives = 35/66 (52%)
 Frame = +2

Query: 278  TQHMIRARSRPTTRTSAPCASTPPQCRRSRSIPQCLRRPRWSTLPALSLRMR*PATRPRR 457
            T+   R+R+ P TR  +   + P   RRSRS    L R R  +   L++R R  +  PR 
Sbjct: 1005 TRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRA 1064

Query: 458  ARGRRT 475
            ARG+R+
Sbjct: 1065 ARGKRS 1070

 Score = 34.3 bits (77), Expect = 0.93
 Identities = 48/170 (28%), Positives = 62/170 (36%), Gaps = 2/170 (1%)
 Frame = +2

Query: 5    SPASSQKAVQLHKWIRGLQSSRSKTSRLRSRSWPMSSPCKHQ*SKN*PRQRRRDINYPGC 184
            SP   + +    +  RG +S    TSR RSRS    +P K   S+  P   RR  +    
Sbjct: 831  SPTRQESSRTSSRRRRG-RSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPL 889

Query: 185  RDGNGSPSFLWCCPSPLWLSDWEWAWASA*RTQHMIRARSRPTTRTSAPCASTPPQCRRS 364
                 S S                      RT  + R RSR   R  +   ++P   RRS
Sbjct: 890  ISRRRSRS----------------------RTSPVSRRRSRSVNRRRSRSRASPVSRRRS 927

Query: 365  RS--IPQCLRRPRWSTLPALSLRMR*PATRPRRARGRRTCRPARWWRTRS 508
            RS   P   RR R  T      R R P    RR+R R      R  R+R+
Sbjct: 928  RSRTPPVTRRRSRSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 977



EST assemble image


clone accession position
1 HCL037e05_r AV641616 1 505
2 HCL059b03_r AV642841 8 510




Chlamydomonas reinhardtii
Kazusa DNA Research Institute