Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002447A_C01 KCC002447A_c01
(510 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF43040.1|AF233430_1 EYE2 [Chlamydomonas reinhardtii] 47 2e-04
pir||S54834 HP8 peptide - human (fragment) 40 0.013
emb|CAA60698.1| HP8 peptide [Homo sapiens] 40 0.013
ref|XP_220207.2| similar to splicing coactivator subunit SRm300;... 40 0.017
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus] 40 0.022
>gb|AAF43040.1|AF233430_1 EYE2 [Chlamydomonas reinhardtii]
Length = 503
Score = 46.6 bits (109), Expect = 2e-04
Identities = 34/101 (33%), Positives = 44/101 (42%), Gaps = 4/101 (3%)
Frame = +2
Query: 215 WCCPSPLWLSDWEWAWASA*RTQHMIRARSRPTTRTSAPCASTPPQCRRSRSIPQCLRRP 394
W C W W W W A +H RP + S PC PPQ RR +C RRP
Sbjct: 352 WGCCCARWAHAWRWCWGWAATRRH------RPQPQWSQPC--LPPQ-RRMLPPLRCRRRP 402
Query: 395 RWSTL---PALSLRMR*PATRPRRARGRRTCRP-ARWWRTR 505
+ TL ++ R+R RP+ R+ R +RWW R
Sbjct: 403 QRLTLRRCRSMPQRLRRCQPRPQHWHPRQLLRRLSRWWSPR 443
>pir||S54834 HP8 peptide - human (fragment)
Length = 200
Score = 40.4 bits (93), Expect = 0.013
Identities = 37/96 (38%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Frame = +2
Query: 254 WAWASA*RTQHMIRARSRPTTRTSAPCASTPPQC---RRSRSIPQCL-------RRPRWS 403
W W + T R R R TRT P P C R+ + P C RRPR
Sbjct: 18 WRWPACSLTSRRRRRRPRTRTRTRRPRTWPPRTCSSRSRTAARPPCTCSPVTPRRRPR-- 75
Query: 404 TLPALSLRMR-*PATRP-RRAR--GRRTCRPARWWR 499
PA + R R PA RP +RA+ GRR RP R WR
Sbjct: 76 PCPARTPRPRSVPACRPWQRAQGAGRRAPRPPREWR 111
>emb|CAA60698.1| HP8 peptide [Homo sapiens]
Length = 341
Score = 40.4 bits (93), Expect = 0.013
Identities = 37/96 (38%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Frame = +2
Query: 254 WAWASA*RTQHMIRARSRPTTRTSAPCASTPPQC---RRSRSIPQCL-------RRPRWS 403
W W + T R R R TRT P P C R+ + P C RRPR
Sbjct: 159 WRWPACSLTSRRRRRRPRTRTRTRRPRTWPPRTCSSRSRTAARPPCTCSPVTPRRRPR-- 216
Query: 404 TLPALSLRMR-*PATRP-RRAR--GRRTCRPARWWR 499
PA + R R PA RP +RA+ GRR RP R WR
Sbjct: 217 PCPARTPRPRSVPACRPWQRAQGAGRRAPRPPREWR 252
>ref|XP_220207.2| similar to splicing coactivator subunit SRm300; RNA binding protein;
AT-rich element binding factor [Rattus norvegicus]
Length = 1971
Score = 40.0 bits (92), Expect = 0.017
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Frame = +2
Query: 65 SRSKTSRLRSRSWPMSSPCKHQ*SKN*P--RQRRRDINYPGCRDGNGSPSFLWCCPSPLW 238
SR+ T+R RSRS + S++ P R+R R P R + S + SP+
Sbjct: 1148 SRTPTTRRRSRSRTPPVTRRRSRSRSPPVTRRRSRSRTSPVTRRRSRSRT------SPVT 1201
Query: 239 LSDWEWAWASA*RTQHMIRARSR----PTTRTSAPCASTPPQCRRSRSIPQCLRRPRWST 406
S RT + R RSR P TR + + P RRSRS L R R +
Sbjct: 1202 RR------RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRS 1255
Query: 407 LPALSLRMR*PATRPRRARGRRT 475
L++R R + PR ARG+R+
Sbjct: 1256 RSPLAIRRRSRSRTPRAARGKRS 1278
Score = 37.0 bits (84), Expect = 0.14
Identities = 50/156 (32%), Positives = 62/156 (39%), Gaps = 8/156 (5%)
Frame = +2
Query: 65 SRSKT---SRLRSRSWPMSSPCKHQ*SKN*PRQRRRDINYPGCRDGNGSPSFLWCCPSPL 235
SRS+T SR RSRS +SP + S++ R+R R P R + S
Sbjct: 1090 SRSRTPLISRRRSRS--RTSPVSRRRSRSVNRRRSRSRASPVSRRRSRS----------- 1136
Query: 236 WLSDWEWAWASA*RTQHMIRARSR---PTTRTSAPCASTPPQCR--RSRSIPQCLRRPRW 400
RT + R RSR PTTR + + P R RSRS P RR R
Sbjct: 1137 -------------RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRSPPVTRRRSRS 1183
Query: 401 STLPALSLRMR*PATRPRRARGRRTCRPARWWRTRS 508
T P R R + R R R P R+RS
Sbjct: 1184 RTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS 1219
Score = 37.0 bits (84), Expect = 0.14
Identities = 54/177 (30%), Positives = 77/177 (42%), Gaps = 8/177 (4%)
Frame = +2
Query: 2 TSPASSQKAVQLHKWIRGLQSSRSKTSRLRSRSWPMSSPCKHQ*SKN*P---RQRRRDIN 172
TSP S +++ +++ R +S S SR RSRS + P + S++ R+R R
Sbjct: 1106 TSPVSRRRSRSVNR--RRSRSRASPVSRRRSRS--RTPPVTRRRSRSRTPTTRRRSRSRT 1161
Query: 173 YPGCRDGNGSPSFLWCCPSPLWLSDWEWAWASA*RTQHMIRARSRPTTRTSAPCASTPPQ 352
P R + S S P+ T+ R+R+ P TR + ++P
Sbjct: 1162 PPVTRRRSRSRS------PPV--------------TRRRSRSRTSPVTRRRSRSRTSPVT 1201
Query: 353 CRRSRS--IPQCLRRPRWSTLPALSLRMR---*PATRPRRARGRRTCRPARWWRTRS 508
RRSRS P RR R T P R R PA R RR+R R P + R+RS
Sbjct: 1202 RRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIR-RRSRSRTPLLPRKRSRSRS 1257
>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
Length = 1754
Score = 39.7 bits (91), Expect = 0.022
Identities = 52/174 (29%), Positives = 74/174 (41%), Gaps = 5/174 (2%)
Frame = +2
Query: 2 TSPASSQKAVQLHKWIRGLQSSRSKTSRLRSRSWPMSSPCKHQ*SKN*PRQRRRDINYPG 181
TSP S +++ +++ R +S S SR RSRS + S+ R+R R P
Sbjct: 899 TSPVSRRRSRSVNR--RRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRSRTPPV 956
Query: 182 CRDGNGSPSFLWCCPSPLWLSDWEWAWASA*RTQHMIRARSRPTTRTSAPCASTPPQCRR 361
R + S + P+ T+ R+R+ P TR + ++P RR
Sbjct: 957 TRRRSRSRT------PPV--------------TRRRSRSRTSPVTRRRSRSRTSPVTRRR 996
Query: 362 SRS--IPQCLRRPRWSTLPALSLRMR---*PATRPRRARGRRTCRPARWWRTRS 508
SRS P RR R T P R R PA R RR+R R P + R+RS
Sbjct: 997 SRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIR-RRSRSRTPLLPRKRSRSRS 1049
Score = 39.3 bits (90), Expect = 0.029
Identities = 24/66 (36%), Positives = 35/66 (52%)
Frame = +2
Query: 278 TQHMIRARSRPTTRTSAPCASTPPQCRRSRSIPQCLRRPRWSTLPALSLRMR*PATRPRR 457
T+ R+R+ P TR + + P RRSRS L R R + L++R R + PR
Sbjct: 1005 TRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRA 1064
Query: 458 ARGRRT 475
ARG+R+
Sbjct: 1065 ARGKRS 1070
Score = 34.3 bits (77), Expect = 0.93
Identities = 48/170 (28%), Positives = 62/170 (36%), Gaps = 2/170 (1%)
Frame = +2
Query: 5 SPASSQKAVQLHKWIRGLQSSRSKTSRLRSRSWPMSSPCKHQ*SKN*PRQRRRDINYPGC 184
SP + + + RG +S TSR RSRS +P K S+ P RR +
Sbjct: 831 SPTRQESSRTSSRRRRG-RSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPL 889
Query: 185 RDGNGSPSFLWCCPSPLWLSDWEWAWASA*RTQHMIRARSRPTTRTSAPCASTPPQCRRS 364
S S RT + R RSR R + ++P RRS
Sbjct: 890 ISRRRSRS----------------------RTSPVSRRRSRSVNRRRSRSRASPVSRRRS 927
Query: 365 RS--IPQCLRRPRWSTLPALSLRMR*PATRPRRARGRRTCRPARWWRTRS 508
RS P RR R T R R P RR+R R R R+R+
Sbjct: 928 RSRTPPVTRRRSRSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 977