KCC002446A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002446A_C01 KCC002446A_c01
gtaaatctactgctggctcagcttcggggacgtccaactccagccctatgtatcctagtc
gccccaaataaacttgacaaCGAGCCAGGCTTGCAAACGCGCAACACCACCAGCAACTTC
AGAAATGTCTTCTAACGCCATCTCATACACCGAATGTATAGCAGCATTAGATCAAGGCAC
ACAATCCACTCGAGTCTACATTTTCGACAAGGAATGCAACGTCCTGGCCTCGCACCAGGC
GGAGCTCCCGCAAATCTATCCACAAGCAGGGTATGTCGCTTTACTTGCGGTGCCGCGACC
AGGTGTCAGGGCTCGTAGAATGCGCGTCTCAGAGCTTGCATGTCCCGGACCCTGGCCCCT
GCCGGCCCGCTTCCATTTGCCCTGTCCGGCTGGCCCTCGCGTGTCACCCCTTGAGCTTTT
TTGTCAGCATGCCCCATGTGTATGGATGTTTGCGGGTCCCACAGTGGGCACAGACCTCTA
AGTGCTCTGCGTGGCCTTGCCAACGCCTGCTCAGCAATTGTCAAGCTCACACATTGGGCG
CAGCGGCACGCCCCTTATGGCACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002446A_C01 KCC002446A_c01
         (564 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00126551.1| COG0554: Glycerol kinase [Pseudomonas syringa...    50  2e-05
ref|NP_793929.1| glycerol kinase [Pseudomonas syringae pv. tomat...    50  2e-05
gb|AAB57804.1| glycerol kinase [Pseudomonas aeruginosa]                50  2e-05
ref|NP_252272.1| glycerol kinase [Pseudomonas aeruginosa PA01] g...    50  2e-05
ref|ZP_00136972.1| COG0554: Glycerol kinase [Pseudomonas aerugin...    50  2e-05

>ref|ZP_00126551.1| COG0554: Glycerol kinase [Pseudomonas syringae pv. syringae B728a]
          Length = 501

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = +2

Query: 158 IAALDQGTQSTRVYIFDKECNVLASHQAELPQIYPQAGYV 277
           I ALDQGT S+R  IFD++ NV+++ Q+E  Q YPQAG+V
Sbjct: 10  IIALDQGTTSSRAIIFDRDANVVSTAQSEFVQHYPQAGWV 49

>ref|NP_793929.1| glycerol kinase [Pseudomonas syringae pv. tomato str. DC3000]
           gi|28854561|gb|AAO57624.1| glycerol kinase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 501

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = +2

Query: 158 IAALDQGTQSTRVYIFDKECNVLASHQAELPQIYPQAGYV 277
           I ALDQGT S+R  IFD++ NV+++ Q+E  Q YPQAG+V
Sbjct: 10  IIALDQGTTSSRAIIFDRDANVVSTAQSEFVQHYPQAGWV 49

>gb|AAB57804.1| glycerol kinase [Pseudomonas aeruginosa]
          Length = 505

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = +2

Query: 158 IAALDQGTQSTRVYIFDKECNVLASHQAELPQIYPQAGYV 277
           + ALDQGT S+R  +FD++ NV++  Q E  Q YPQAG+V
Sbjct: 10  VVALDQGTTSSRAIVFDRDANVVSQAQREFAQFYPQAGWV 49

>ref|NP_252272.1| glycerol kinase [Pseudomonas aeruginosa PA01]
           gi|12230921|sp|Q51390|GLPK_PSEAE Glycerol kinase
           (ATP:glycerol 3-phosphotransferase) (Glycerokinase) (GK)
           gi|11348625|pir||H83196 glycerol kinase PA3582
           [imported] - Pseudomonas aeruginosa  (strain PAO1)
           gi|9949737|gb|AAG06970.1|AE004779_2 glycerol kinase
           [Pseudomonas aeruginosa PAO1]
          Length = 505

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = +2

Query: 158 IAALDQGTQSTRVYIFDKECNVLASHQAELPQIYPQAGYV 277
           + ALDQGT S+R  +FD++ NV++  Q E  Q YPQAG+V
Sbjct: 10  VVALDQGTTSSRAIVFDRDANVVSQAQREFAQFYPQAGWV 49

>ref|ZP_00136972.1| COG0554: Glycerol kinase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 505

 Score = 50.1 bits (118), Expect = 2e-05
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = +2

Query: 158 IAALDQGTQSTRVYIFDKECNVLASHQAELPQIYPQAGYV 277
           + ALDQGT S+R  +FD++ NV++  Q E  Q YPQAG+V
Sbjct: 10  VVALDQGTTSSRAIVFDRDANVVSQAQREFAQFYPQAGWV 49



EST assemble image


clone accession position
1 HCL037a01_r AV641591 1 557
2 LCL059d07_r AV629472 106 564
3 MX232c01_r BP090994 106 533




Chlamydomonas reinhardtii
Kazusa DNA Research Institute