KCC002432A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002432A_C01 KCC002432A_c01
gcaggcgggccataaGGCTCTGCCACCATGAGACCAATCCGGAGACCAATGGTCGCGGCA
TAGGGGTCGTCGCTCCGTCCATACAGCTCCGTTTGCTGCGACGTAAAGTGCTATGTTATC
ATAACTTCAGGCTCTATAAAAGGACATCATTCAAAAAGCCAACTGTTGCGATTTGGCTGG
GGACCGATACACCGGTCTCTCTCGCAGCCCGCTTTCGTGAGCCCCAAGAAGCCTTTGTAG
CCGTCGAGCTCGCTGCCGAAGTCAGCGGTCGGTGCAAGCCCGTTCCTGTAGTACCGGCGC
CACAGCTCTCCGACTATCCCCCCACCCCCTGCGGGGCTACCGAGGCCAAAAGCGGCGCCC
ACCCACGCAGCGTCGTAAGGGACTACGCGCACCGTGGTCGTCTCAACGGTGTACTGCAGG
GCACTTGAACTCCAGTAGCGCCTTCAGCTTGCCTGGTTGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002432A_C01 KCC002432A_c01
         (461 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_570820.1| latent nuclear antigen [Macaca mulatta rhadinov...    36  0.18
ref|XP_304034.1| hypothetical protein XP_304034 [Homo sapiens]         36  0.24
ref|ZP_00018637.1| hypothetical protein [Chloroflexus aurantiacus]     36  0.24
gb|AAF60071.1|AF210726_92 latency-associated nuclear antigen [Ma...    35  0.31
ref|XP_140087.1| hypothetical protein XP_140087 [Mus musculus]         35  0.41

>ref|NP_570820.1| latent nuclear antigen [Macaca mulatta rhadinovirus]
           gi|4494984|gb|AAD21406.1| latent nuclear antigen [Macaca
           mulatta rhadinovirus 17577]
          Length = 448

 Score = 36.2 bits (82), Expect = 0.18
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = +1

Query: 202 SQPAFVSPKKPL*PSSSLPKSAVGASPFL*YRRHSSPTIPPPPAGLPRP 348
           S P+   P  P  PSS  P      S FL    H SP  P PP  LP P
Sbjct: 140 SPPSHPGPHSPAPPSSHNPSPNQQPSSFLQPSHHDSPEPPEPPTSLPPP 188

>ref|XP_304034.1| hypothetical protein XP_304034 [Homo sapiens]
          Length = 232

 Score = 35.8 bits (81), Expect = 0.24
 Identities = 32/119 (26%), Positives = 49/119 (40%), Gaps = 4/119 (3%)
 Frame = +1

Query: 16  GSATMRPIRRPMVAA*GSSLRPYSSVCCDVK----CYVIITSGSIKGHHSKSQLLRFGWG 183
           G++ +RP+R P++    SS +P  +  C ++    C  +  SGS +   + S        
Sbjct: 111 GASALRPLRSPLLLQAASSKKPSPAASCFLQEALSCCKLPPSGSPRLLQAASS------- 163

Query: 184 PIHRSLSQPAFVSPKKPL*PSSSLPKSAVGASPFL*YRRHSSPTIPPPPAGLPRPKAAP 360
              R  + P   S +KP     S P++A    P        SP   PPP   P PK  P
Sbjct: 164 ---RKPTPPQAASSRKP-----SPPQAASSRKP--------SPPKLPPPGSPPHPKLPP 206

>ref|ZP_00018637.1| hypothetical protein [Chloroflexus aurantiacus]
          Length = 651

 Score = 35.8 bits (81), Expect = 0.24
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = +3

Query: 180 GTDTPVSLAARFREPQEAFVAVELAAEVSGRCKPVPVVPAPQLSDY-PPTPCGATEAKSG 356
           G+DTP+S    + E  E     E          P PV P PQL  + P  PC        
Sbjct: 220 GSDTPLSFGHYYPELGETIPPPEYHGP------PAPVYPHPQLDGWRPQLPCYQVHTTPE 273

Query: 357 AHPRSVVRDYAHRGRL-NGVLQGT*TPVAPS 446
            H  +++R+  HR  L +G+++G      PS
Sbjct: 274 FH--AIIRENLHRAPLFSGIIEGVGPRYCPS 302

>gb|AAF60071.1|AF210726_92 latency-associated nuclear antigen [Macaca mulatta rhadinovirus
           26-95]
          Length = 448

 Score = 35.4 bits (80), Expect = 0.31
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = +1

Query: 202 SQPAFVSPKKPL*PSSSLPKSAVGASPFL*YRRHSSPTIPPPPAGLPRP 348
           S P+   P  P  PSS  P      S FL    H SP  P PP  LP P
Sbjct: 140 SPPSHPGPHSPAPPSSHNPSPNQQPSSFLQPSPHDSPEPPEPPTSLPPP 188

>ref|XP_140087.1| hypothetical protein XP_140087 [Mus musculus]
          Length = 621

 Score = 35.0 bits (79), Expect = 0.41
 Identities = 30/94 (31%), Positives = 41/94 (42%), Gaps = 7/94 (7%)
 Frame = -3

Query: 435 LEFKCPAVHR*D------DHGARSPLRRCVGGRRFWPR*PRRGWGD-SRRAVAPVLQERA 277
           LE  C AV + D      D G+  P  R  G  R W    R   G+ +RR V  V +   
Sbjct: 126 LECPCKAVGQWDVKLKRGDTGSEGPDERGCGNSRGWVPQERAATGEETRRGVGTVGE--- 182

Query: 276 CTDR*LRQRARRLQRLLGAHESGLRERPVYRSPA 175
                 R+R+ R +R+   H S  + RP  R+PA
Sbjct: 183 ------RRRSARRERVRAPHRSSSQPRPTPRTPA 210



EST assemble image


clone accession position
1 HCL089a04_r AV644460 1 461
2 HCL034a10_r AV641462 16 317




Chlamydomonas reinhardtii
Kazusa DNA Research Institute