KCC002428A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002428A_C01 KCC002428A_c01
aaatatgcaAAGAAAACGTTTCAGCAGGGCGGCACACGCCAAGCTGGTTTTCGATCTTTC
GGCAGAGTTTGGCAAGGACGCGGCCTGGAAGCTGGCCGCTATGGACGCCTTGAGAAAGGC
AGATCCGTACGACCTTTTGTTGATGCACGGCCTCACCACGGCAGAACAGCTGGAGTTTGT
GGAGGCCTTAATTCAGAAGCATCTGACCTCGGCGGCTGGCCTGAGCGAGGAGAGCGGGTC
CGGAACTGGTGACGATTACATCAGGCGGTGGCGGGAAGTGATGTCGCCTTCAAACCTCGA
CCAAGCAACGATGCAGGAGGGGCCGCACCCCATGGTCCGCAACTGGCGGCCGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002428A_C01 KCC002428A_c01
         (354 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC86703.1| unnamed protein product [Homo sapiens]                 36  0.12
ref|NP_067736.1| overlapping protein/movement protein [Chayote m...    36  0.12
ref|NP_493190.1| predicted CDS, surface antigen like (1N181) [Ca...    35  0.35
ref|NP_421100.1| peptidase, M23/M37 family [Caulobacter crescent...    34  0.46
ref|NP_903782.1| aspartate ammonia-lyase [Chromobacterium violac...    34  0.46

>dbj|BAC86703.1| unnamed protein product [Homo sapiens]
          Length = 195

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 28/86 (32%), Positives = 39/86 (44%)
 Frame = -2

Query: 332 WGAAPPASLLGRGLKATSLPATA*CNRHQFRTRSPRSGQPPRSDASELRPPQTPAVLPW* 153
           W A  P +    GL+    P      +   ++RSP+    P   +   RPP T +VLP  
Sbjct: 36  WPALLPVTPCSSGLRTPHPPQHLRKPQKAAKSRSPQPLARPWLASGTFRPPSTGSVLPPA 95

Query: 152 GRASTKGRTDLPFSRRP*RPASRPRP 75
            R + +  T LP S+ P  P S PRP
Sbjct: 96  PR-TVQPETPLPLSQPP-GPTSPPRP 119

>ref|NP_067736.1| overlapping protein/movement protein [Chayote mosaic tymovirus]
           gi|6456717|gb|AAF09239.1|AF195000_1 overlapping protein
           [chayote mosaic tymovirus]
          Length = 680

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 27/76 (35%), Positives = 35/76 (45%), Gaps = 5/76 (6%)
 Frame = -2

Query: 242 RTRSPRSGQPPRSDASELRPPQTPAVLPW*GRASTKGRTDLPFSRRP*RPASRPRPCQTL 63
           R++  R G  P S +S L P   PA        + KG   LP  RRP +P+S PRP    
Sbjct: 449 RSKPLRRGFLPPSTSSPLLPSPVPA-------PNGKGLLPLPLPRRPCKPSSTPRPHHPH 501

Query: 62  PKD-----RKPAWRVP 30
            K       +PA +VP
Sbjct: 502 RKSHSHLPNQPASKVP 517

>ref|NP_493190.1| predicted CDS, surface antigen like (1N181) [Caenorhabditis
           elegans] gi|7500411|pir||T21700 hypothetical protein
           F33E2.6 - Caenorhabditis elegans
           gi|3876650|emb|CAB06541.1| Hypothetical protein F33E2.6
           [Caenorhabditis elegans]
          Length = 846

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
 Frame = -2

Query: 335 PWGAAPPASLLGRGLKATSLPATA*CNRHQFRTRSPRSGQPPRSDASELRPPQTPAVL-- 162
           P   APP + +   L   ++P      R +     P   +PP+++A    PP+T A +  
Sbjct: 625 PPRTAPPRTEVSMTLPPETVPPNTEAPRTEVPMTVPPRTEPPKTEAPRTVPPKTEAPMTE 684

Query: 161 -PW*GRASTKGRTDLPFSRRP*RPASRPRPCQTLPKDRKPAWRVPP 27
            P  G      RT++P +  P     R  P +T      P   VPP
Sbjct: 685 VPMTG----PSRTEVPMTEPPKTEQPRTAPPRTEVSMTLPPETVPP 726

>ref|NP_421100.1| peptidase, M23/M37 family [Caulobacter crescentus CB15]
           gi|25400764|pir||H87533 peptidase, M23/M37 family
           [imported] - Caulobacter crescentus
           gi|13423816|gb|AAK24268.1| peptidase, M23/M37 family
           [Caulobacter crescentus CB15]
          Length = 298

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = -2

Query: 239 TRSPRSGQPPRSDASELRPPQTPAVLPW*GRASTKGRTDLPFSRRP*RPASRPRPCQTLP 60
           T  P +G+ P+  + E  PPQ P   P  G A   G   +P S  P    + P P  +  
Sbjct: 23  TSKPAAGETPKPPSPEPGPPQ-PDDSPADGGAEQLGSEPIPPSPDPAPQPAEPPPPTSAT 81

Query: 59  KDRKPAWRVPP 27
            D  PA  +PP
Sbjct: 82  FDHAPAGVIPP 92

>ref|NP_903782.1| aspartate ammonia-lyase [Chromobacterium violaceum ATCC 12472]
           gi|34105418|gb|AAQ61773.1| aspartate ammonia-lyase
           [Chromobacterium violaceum ATCC 12472]
          Length = 467

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = +2

Query: 2   NMQRKRFSRAAHAKLVFDLSAEFGKDAAWKLAAMDALRKADPYDLLLMHGLTTAEQLE 175
           N +R R S  +   LV  L+   G +AA ++AA      +   D++L HGL T EQL+
Sbjct: 394 NRERLRLSVESSIGLVTALNPVIGYEAATRVAAEAHANGSSVADVVLAHGLLTREQLD 451



EST assemble image


clone accession position
1 HCL033c11_r AV641420 1 354
2 LCL021c12_r AV627115 10 248




Chlamydomonas reinhardtii
Kazusa DNA Research Institute