KCC002427A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002427A_C01 KCC002427A_c01
tgtatgaccttatggatatgcaatTGTGCGTCACCTTGGCATTTTAGAGTGCGCGGGCCT
GTGCGCGGGCTGAGCTCCCCTTGCTCTACGCAAATGACAAAGTCTAGATCGTCTTGTTCA
GTATGAAGAAAGATTCTGCTGATGGCAACAGCGCAGGCCGAGCGGCGCCTTCGCCTCGCG
GCGACGAGGTCCCTGCTCTATAGCCTGCCAATTAACGAGCTGTTTGAGCTCCCTGGGCGG
CCGCACGTCGTCTATCAGCTCCGCAGCTATGCTAATACTAGCAATCCGGAAGAAGCTGCA
TTGGCAGCTCGCAGTGACTCGCCCTTCCTCTTCAAGGCGTTCGAGACGGGGCAAATCGGC
CCCAAGCGCCTTGCTCGCATCCATGGCGGCAAGCCGCGGGTCCACACCATTCATGAATAC
CTAGATTGGACGGTTACAGCCCAGGCGGCCGAGGGTGACGACGATCTGGACTTCGGCGGC
TTCCGCGTGCTGGTGATTCTGCCTCGGTACC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002427A_C01 KCC002427A_c01
         (511 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_662205.1| 4-diphosphocytidyl-2C-methyl-D-erythritol synth...    35  0.42
ref|NP_215246.1| secY [Mycobacterium tuberculosis H37Rv] gi|1584...    33  2.1
ref|NP_421511.1| hypothetical protein [Caulobacter crescentus CB...    33  2.1
ref|ZP_00059266.1| COG0265: Trypsin-like serine proteases, typic...    33  2.1
ref|NP_343098.1| Transposase ISC1250 [Sulfolobus solfataricus] g...    33  2.7

>ref|NP_662205.1| 4-diphosphocytidyl-2C-methyl-D-erythritol synthase [Chlorobium
           tepidum TLS] gi|33516917|sp|Q8KCU3|ISPD_CHLTE
           2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
           (4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
           (MEP cytidylyltransferase) (MCT)
           gi|21647299|gb|AAM72547.1|
           4-diphosphocytidyl-2C-methyl-D-erythritol synthase
           [Chlorobium tepidum TLS]
          Length = 246

 Score = 35.4 bits (80), Expect = 0.42
 Identities = 23/95 (24%), Positives = 45/95 (47%)
 Frame = +1

Query: 127 RKILLMATAQAERRLRLAATRSLLYSLPINELFELPGRPHVVYQLRSYANTSNPEEAALA 306
           + ++++A +   +R++L   RS        ++ E+ G+P + + ++++   S  E   +A
Sbjct: 2   KTVVIIAASGVGKRMKLDGGRS-------KQMLEIGGQPVIWHTMKAFQEASTVESVYIA 54

Query: 307 ARSDSPFLFKAFETGQIGPKRLARIHGGKPRVHTI 411
              DS  +FK         K  A I GGK R  +I
Sbjct: 55  TLPDSIPVFKEIAKANGFTKITAIIEGGKERQDSI 89

>ref|NP_215246.1| secY [Mycobacterium tuberculosis H37Rv]
           gi|15840139|ref|NP_335176.1| preprotein translocase SecY
           subunit [Mycobacterium tuberculosis CDC1551]
           gi|31791918|ref|NP_854411.1| PROBABLE PREPROTEIN
           TRANSLOCASE SECY [Mycobacterium bovis subsp. bovis
           AF2122/97] gi|3024605|sp|P94926|SECY_MYCTU Preprotein
           translocase secY subunit gi|7444762|pir||G70822 probable
           secY protein - Mycobacterium tuberculosis (strain H37RV)
           gi|1813627|gb|AAD09878.1| preprotein translocase SecY
           subunit [Mycobacterium bovis] gi|2911006|emb|CAA17499.1|
           secY [Mycobacterium tuberculosis H37Rv]
           gi|13880291|gb|AAK44990.1| preprotein translocase SecY
           subunit [Mycobacterium tuberculosis CDC1551]
           gi|31617505|emb|CAD93615.1| PROBABLE PREPROTEIN
           TRANSLOCASE SECY [Mycobacterium bovis subsp. bovis
           AF2122/97]
          Length = 441

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = -2

Query: 483 EAAEVQIVVTLGRLGCNRPI*VFMNGVDPRLAAMDASKALGADLPRLERLEEEGRVTASC 304
           EA ++  ++ L   G    + VF  GV P + A    + L   +PR E L +EG+   S 
Sbjct: 55  EAGQIYSLINLFSGGALLKLTVFAVGVMPYITASIIVQLLTVVIPRFEELRKEGQAGQSK 114

Query: 303 QCSFFRIASISIA 265
              + R  +I++A
Sbjct: 115 MTQYTRYLAIALA 127

>ref|NP_421511.1| hypothetical protein [Caulobacter crescentus CB15]
           gi|25398421|pir||C87585 hypothetical protein CC2714
           [imported] - Caulobacter crescentus
           gi|13424303|gb|AAK24679.1| hypothetical protein
           [Caulobacter crescentus CB15]
          Length = 212

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 39/112 (34%), Positives = 48/112 (42%)
 Frame = -1

Query: 490 ARGSRRSPDRRHPRPPGL*PSNLGIHEWCGPAACRHGCEQGAWGRFAPSRTP*RGRASHC 311
           AR  RRS D   P PPGL  S+      CGP  C H     AW R+AP            
Sbjct: 47  ARPQRRSLD---PTPPGLKLSS----RQCGPRPCPHRVTPSAW-RWAPC------GVVFV 92

Query: 310 ELPMQLLPDC*Y*HSCGADRRRAAAQGAQTAR*LAGYRAGTSSPRGEGAARP 155
              M+  P C    S G+ ++  A +  + AR   G+ A TSS     AARP
Sbjct: 93  SASMRPAPHC---PSTGS-QQSYACRRRRCARRCHGWPAKTSS---RNAARP 137

>ref|ZP_00059266.1| COG0265: Trypsin-like serine proteases, typically periplasmic,
           contain C-terminal PDZ domain [Thermobifida fusca]
          Length = 583

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 24/62 (38%), Positives = 27/62 (42%), Gaps = 5/62 (8%)
 Frame = -1

Query: 499 ESPARGSRRSPDRRHPRPPGL*PSNLGIHEWCGP-----AACRHGCEQGAWGRFAPSRTP 335
           E+PA GSR +P    PRP    P +   H   GP     A  RHG  Q   G  AP   P
Sbjct: 92  EAPAPGSRETPPHPAPRPAPFAPQSHAPHPAWGPPAPDQATARHGA-QAYPGPEAPQPAP 150

Query: 334 *R 329
            R
Sbjct: 151 GR 152

>ref|NP_343098.1| Transposase ISC1250 [Sulfolobus solfataricus]
           gi|25394643|pir||A90329 transposase ISC1250 [imported] -
           Sulfolobus solfataricus gi|13814926|gb|AAK41888.1|
           Transposase ISC1250 [Sulfolobus solfataricus]
          Length = 342

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (50%)
 Frame = -3

Query: 167 RRSACAVAISRIFLHTEQDDLDFVICVEQGELSPRTGPRTL 45
           RR  C V + R     E++ L+ +   E GE+ P T PR L
Sbjct: 241 RRQGCLVHLKRNATKEEREALNVIFSAESGEIKPETCPRLL 281



EST assemble image


clone accession position
1 LCL037c04_r AV628133 1 471
2 HCL033b09_r AV641413 25 416
3 MXL008a02_r BP093407 28 511
4 LCL078f11_r AV630428 100 409




Chlamydomonas reinhardtii
Kazusa DNA Research Institute