KCC002425A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002425A_C01 KCC002425A_c01
ccaacgcctgggtgctgccggaggggcagtacggcgcattccgaggcctggacgGCGAGG
TGTGGGTGTGCACGCAGCGCGCGGCGCTCAACCTGTCCTACCAGGAGCGCACGCCCACGC
GCGGCTCTCCCGAGCTGCTGCTGGAGCTGAGCGGGCAGGACCTGATCGGCACGCCCGTGA
AGAGCCCGCTGTGCCCGCACGAGCGCGTGTACGTGCTGCCGCTGCTGACCATCCTGACCA
GCAAGGGCACGGGCGTGGTGACGTCGGTGCCCTCCGACTCGCCCGATGACTACACCGCGC
TGCAGGACCTGAAGAAGAAGCCCAAGCTGCGTGAGAAGTACGGCGTGGCGGATGAGTGGG
TGCTGCCCTTCGAGGTCATCCCCATCATTGACATCCCCGGATTCGGCAACCAGGCCGCCG
TCAAGGTGTGCGACGACCTCAAGATCGCCAGCCAGAACGACACCGCCAAACTGGCCGAGG
CCAAGAACATGGTCTACCTCAAGGGCTTCACGGACGGCGTGATGGCGGTGGGCCCCTACG
CCGGCCGCAAGGTGAGCGAGGCCAAGCCCATCATCCGTGAGGAGCTGGTGGCGGGCGGCG
GCGCGCTCATGTACAGCGAGCCCGAGCGCACCGTCATGAGCCGCAGCGGAGACGAGTGCG
TGGTGGCGCTGACCGACCAGTGGTACATGACCTACGGCGAGGAGGAGTGGGCTGCCGCCA
CTCGAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002425A_C01 KCC002425A_c01
         (726 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_172433.1| leucyl-tRNA synthetase -related [Arabidopsis th...   315  5e-85
dbj|BAA92590.1| KIAA1352 protein [Homo sapiens]                       283  2e-75
dbj|BAB14674.1| unnamed protein product [Homo sapiens]                283  2e-75
ref|NP_064502.8| leucyl-tRNA synthetase [Homo sapiens] gi|780445...   283  2e-75
dbj|BAC98147.1| mKIAA1352 protein [Mus musculus]                      275  4e-73

>ref|NP_172433.1| leucyl-tRNA synthetase -related [Arabidopsis thaliana]
            gi|25292955|pir||H86229 hypothetical protein [imported] -
            Arabidopsis thaliana gi|2160156|gb|AAB60719.1| Strong
            similarity to S. pombe leucyl-tRNA synthetase
            (gb|Z73100). [Arabidopsis thaliana]
          Length = 1084

 Score =  315 bits (807), Expect = 5e-85
 Identities = 153/236 (64%), Positives = 189/236 (79%)
 Frame = +3

Query: 3    NAWVLPEGQYGAFRGLDGEVWVCTQRAALNLSYQERTPTRGSPELLLELSGQDLIGTPVK 182
            NAWVLP+G+YGA+   + EV++ T+RAALNL+YQ  +     P  L+EL+G DLIG P++
Sbjct: 308  NAWVLPDGKYGAYEISETEVFILTERAALNLAYQNFSKNPQEPSCLVELTGYDLIGLPLR 367

Query: 183  SPLCPHERVYVLPLLTILTSKGTGVVTSVPSDSPDDYTALQDLKKKPKLREKYGVADEWV 362
            SPL  +E +Y LP+LTILT+KGTG+VTSVPSD+PDDY ALQDL KKP L++KYGV  EW 
Sbjct: 368  SPLSVNEIIYALPMLTILTNKGTGIVTSVPSDAPDDYMALQDLIKKPALQDKYGVKTEW- 426

Query: 363  LPFEVIPIIDIPGFGNQAAVKVCDDLKIASQNDTAKLAEAKNMVYLKGFTDGVMAVGPYA 542
            LP E+IPII+IP FG++AA KVC DLKI SQND  KLAEAK + YLKGFT+G M +G + 
Sbjct: 427  LPTEIIPIINIPEFGDKAAEKVCLDLKIKSQNDKEKLAEAKRLTYLKGFTEGTMLIGEFF 486

Query: 543  GRKVSEAKPIIREELVAGGGALMYSEPERTVMSRSGDECVVALTDQWYMTYGEEEW 710
            GRKV E KPII+ +L+  G A++YSEPE+ VMSRSGDECVVALTDQWY+TYGE EW
Sbjct: 487  GRKVQEIKPIIKTKLIETGEAIIYSEPEKPVMSRSGDECVVALTDQWYITYGESEW 542

>dbj|BAA92590.1| KIAA1352 protein [Homo sapiens]
          Length = 1212

 Score =  283 bits (724), Expect = 2e-75
 Identities = 132/240 (55%), Positives = 177/240 (73%)
 Frame = +3

Query: 3    NAWVLPEGQYGAFRGLDGEVWVCTQRAALNLSYQERTPTRGSPELLLELSGQDLIGTPVK 182
            N WV P+ +Y  F  ++G++++CTQ+AA N+SYQ  T   G   ++ EL G++++G  + 
Sbjct: 340  NCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLS 399

Query: 183  SPLCPHERVYVLPLLTILTSKGTGVVTSVPSDSPDDYTALQDLKKKPKLREKYGVADEWV 362
            +PL  ++ +YVLP+LTI   KGTGVVTSVPSDSPDD  AL+DLKKK  LR KYG+ D+ V
Sbjct: 400  APLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMV 459

Query: 363  LPFEVIPIIDIPGFGNQAAVKVCDDLKIASQNDTAKLAEAKNMVYLKGFTDGVMAVGPYA 542
            LPFE +P+I+IPGFGN +AV +CD+LKI SQND  KLAEAK  +YLKGF +G+M V  + 
Sbjct: 460  LPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFK 519

Query: 543  GRKVSEAKPIIREELVAGGGALMYSEPERTVMSRSGDECVVALTDQWYMTYGEEEWAAAT 722
            G+KV + K  I+++++  G AL+Y EPE+ VMSRS DECVVAL DQWY+ YGEE W   T
Sbjct: 520  GQKVQDVKKTIQKKMIDAGDALIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWKKQT 579

>dbj|BAB14674.1| unnamed protein product [Homo sapiens]
          Length = 928

 Score =  283 bits (724), Expect = 2e-75
 Identities = 132/240 (55%), Positives = 177/240 (73%)
 Frame = +3

Query: 3   NAWVLPEGQYGAFRGLDGEVWVCTQRAALNLSYQERTPTRGSPELLLELSGQDLIGTPVK 182
           N WV P+ +Y  F  ++G++++CTQ+AA N+SYQ  T   G   ++ EL G++++G  + 
Sbjct: 56  NCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLS 115

Query: 183 SPLCPHERVYVLPLLTILTSKGTGVVTSVPSDSPDDYTALQDLKKKPKLREKYGVADEWV 362
           +PL  ++ +YVLP+LTI   KGTGVVTSVPSDSPDD  AL+DLKKK  LR KYG+ D+ V
Sbjct: 116 APLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMV 175

Query: 363 LPFEVIPIIDIPGFGNQAAVKVCDDLKIASQNDTAKLAEAKNMVYLKGFTDGVMAVGPYA 542
           LPFE +P+I+IPGFGN +AV +CD+LKI SQND  KLAEAK  +YLKGF +G+M V  + 
Sbjct: 176 LPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFK 235

Query: 543 GRKVSEAKPIIREELVAGGGALMYSEPERTVMSRSGDECVVALTDQWYMTYGEEEWAAAT 722
           G+KV + K  I+++++  G AL+Y EPE+ VMSRS DECVVAL DQWY+ YGEE W   T
Sbjct: 236 GQKVQDVKKTIQKKMIDAGDALIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWKKQT 295

>ref|NP_064502.8| leucyl-tRNA synthetase [Homo sapiens] gi|7804450|dbj|BAA95667.1|
            leucyl tRNA synthetase [Homo sapiens]
          Length = 1176

 Score =  283 bits (724), Expect = 2e-75
 Identities = 132/240 (55%), Positives = 177/240 (73%)
 Frame = +3

Query: 3    NAWVLPEGQYGAFRGLDGEVWVCTQRAALNLSYQERTPTRGSPELLLELSGQDLIGTPVK 182
            N WV P+ +Y  F  ++G++++CTQ+AA N+SYQ  T   G   ++ EL G++++G  + 
Sbjct: 304  NCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGEEILGASLS 363

Query: 183  SPLCPHERVYVLPLLTILTSKGTGVVTSVPSDSPDDYTALQDLKKKPKLREKYGVADEWV 362
            +PL  ++ +YVLP+LTI   KGTGVVTSVPSDSPDD  AL+DLKKK  LR KYG+ D+ V
Sbjct: 364  APLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMV 423

Query: 363  LPFEVIPIIDIPGFGNQAAVKVCDDLKIASQNDTAKLAEAKNMVYLKGFTDGVMAVGPYA 542
            LPFE +P+I+IPGFGN +AV +CD+LKI SQND  KLAEAK  +YLKGF +G+M V  + 
Sbjct: 424  LPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFK 483

Query: 543  GRKVSEAKPIIREELVAGGGALMYSEPERTVMSRSGDECVVALTDQWYMTYGEEEWAAAT 722
            G+KV + K  I+++++  G AL+Y EPE+ VMSRS DECVVAL DQWY+ YGEE W   T
Sbjct: 484  GQKVQDVKKTIQKKMIDAGDALIYMEPEKQVMSRSSDECVVALCDQWYLDYGEENWKKQT 543

>dbj|BAC98147.1| mKIAA1352 protein [Mus musculus]
          Length = 1210

 Score =  275 bits (704), Expect = 4e-73
 Identities = 131/240 (54%), Positives = 172/240 (71%)
 Frame = +3

Query: 3    NAWVLPEGQYGAFRGLDGEVWVCTQRAALNLSYQERTPTRGSPELLLELSGQDLIGTPVK 182
            N WV P+ +Y  F   +G++++CTQRAA N+SYQ  T   G   ++ EL G++++G  + 
Sbjct: 338  NCWVRPDMKYIGFETANGDIFICTQRAARNMSYQGFTKHNGVVPVVKELMGEEILGASLS 397

Query: 183  SPLCPHERVYVLPLLTILTSKGTGVVTSVPSDSPDDYTALQDLKKKPKLREKYGVADEWV 362
            +PL  ++ VYVLP+LTI   KGTGVVTSVPSDSPDD  AL+DLKKK  LR K+G+ D+ V
Sbjct: 398  APLTCYKVVYVLPMLTIKEDKGTGVVTSVPSDSPDDLAALRDLKKKQALRTKFGIRDDMV 457

Query: 363  LPFEVIPIIDIPGFGNQAAVKVCDDLKIASQNDTAKLAEAKNMVYLKGFTDGVMAVGPYA 542
            LPFE +P+++IPG GN  AV VCD+LKI SQND  KLAEAK  +YL+GF DGVM V  + 
Sbjct: 458  LPFEPVPVLEIPGIGNLPAVTVCDELKIQSQNDREKLAEAKEKLYLRGFYDGVMLVDGFK 517

Query: 543  GRKVSEAKPIIREELVAGGGALMYSEPERTVMSRSGDECVVALTDQWYMTYGEEEWAAAT 722
            G+K+   K  I++ ++  G AL+Y EPE+ VMSRS DECVVAL DQWY+ YG+E W   T
Sbjct: 518  GQKIQHVKKTIQKNMIEAGDALIYMEPEKQVMSRSADECVVALCDQWYLDYGDENWKKQT 577



EST assemble image


clone accession position
1 LCL017f05_r AV626896 1 272
2 HCL032h10_r AV641402 55 430
3 LCL037a06_r AV628120 220 664
4 LCL098f10_r AV631719 324 726




Chlamydomonas reinhardtii
Kazusa DNA Research Institute