Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002414A_C01 KCC002414A_c01
(468 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_329829.1| predicted protein [Neurospora crassa] gi|289248... 36 0.19
pir||T19212 hypothetical protein C12C8.3 - Caenorhabditis elegans 33 1.2
ref|NP_492488.2| abnormal cell LINeage LIN-41, heterochronic gen... 33 1.2
ref|NP_492487.2| abnormal cell LINeage LIN-41, heterochronic gen... 33 1.2
ref|NP_626291.1| hypothetical protein [Streptomyces coelicolor A... 33 2.1
>ref|XP_329829.1| predicted protein [Neurospora crassa] gi|28924895|gb|EAA33989.1|
predicted protein [Neurospora crassa]
Length = 523
Score = 36.2 bits (82), Expect = 0.19
Identities = 21/61 (34%), Positives = 30/61 (48%), Gaps = 3/61 (4%)
Frame = +3
Query: 12 LQPPAPRLLLWASRRS---PPIRRTQRSCCGGSSHTAHNIHSDANTAGLHVAKPPDRAPT 182
+QPP P S R PP R+ S +S+ HN+HS AN H A+P ++ +
Sbjct: 331 VQPPYP-----VSERGSPPPPHSRSSHSTSTSTSNPLHNLHSFANRTSSHSAQPQQQSQS 385
Query: 183 P 185
P
Sbjct: 386 P 386
>pir||T19212 hypothetical protein C12C8.3 - Caenorhabditis elegans
Length = 1185
Score = 33.5 bits (75), Expect = 1.2
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Frame = +2
Query: 116 QYTFRCKHGRPTCSKTA*PCSHSTPAVLSSRCSHPSMSLAMGVTPSSHASSGCVMAM*FG 295
Q +FRC CSK+ ST VL C+H + +TPSS+ C + G
Sbjct: 109 QDSFRCS----VCSKS------STIGVLPFVCAHKTCQSCYQMTPSSYDRRACKLC---G 155
Query: 296 SSSHRVKRKSSQAH-------PQRKAMCSDAAT*TM 382
+ S +SQ + P R A+ SD +T TM
Sbjct: 156 AVSTATANFTSQMYLSPTLPSPPRGALMSDCSTPTM 191
>ref|NP_492488.2| abnormal cell LINeage LIN-41, heterochronic gene; Drosophila
dappled/ vertebrate TRipartite Motif protein related;
B-box zinc finger, Filamin and NHL repeat containing
protein (124.2 kD) (lin-41) [Caenorhabditis elegans]
gi|6531663|gb|AAF15530.1|AF195611_1 LIN-41B
[Caenorhabditis elegans] gi|14530341|emb|CAC42254.1| C.
elegans LIN-41 protein (corresponding sequence C12C8.3a)
[Caenorhabditis elegans]
Length = 1147
Score = 33.5 bits (75), Expect = 1.2
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Frame = +2
Query: 116 QYTFRCKHGRPTCSKTA*PCSHSTPAVLSSRCSHPSMSLAMGVTPSSHASSGCVMAM*FG 295
Q +FRC CSK+ ST VL C+H + +TPSS+ C + G
Sbjct: 109 QDSFRCS----VCSKS------STIGVLPFVCAHKTCQSCYQMTPSSYDRRACKLC---G 155
Query: 296 SSSHRVKRKSSQAH-------PQRKAMCSDAAT*TM 382
+ S +SQ + P R A+ SD +T TM
Sbjct: 156 AVSTATANFTSQMYLSPTLPSPPRGALMSDCSTPTM 191
>ref|NP_492487.2| abnormal cell LINeage LIN-41, heterochronic gene; Drosophila
dappled/ vertebrate TRipartite Motif protein related;
B-box zinc finger, Filamin and NHL repeat containing
protein (123.8 kD) (lin-41) [Caenorhabditis elegans]
gi|6531661|gb|AAF15529.1|AF195610_1 LIN-41A
[Caenorhabditis elegans] gi|14530342|emb|CAC42255.1| C.
elegans LIN-41 protein (corresponding sequence C12C8.3b)
[Caenorhabditis elegans]
Length = 1143
Score = 33.5 bits (75), Expect = 1.2
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Frame = +2
Query: 116 QYTFRCKHGRPTCSKTA*PCSHSTPAVLSSRCSHPSMSLAMGVTPSSHASSGCVMAM*FG 295
Q +FRC CSK+ ST VL C+H + +TPSS+ C + G
Sbjct: 109 QDSFRCS----VCSKS------STIGVLPFVCAHKTCQSCYQMTPSSYDRRACKLC---G 155
Query: 296 SSSHRVKRKSSQAH-------PQRKAMCSDAAT*TM 382
+ S +SQ + P R A+ SD +T TM
Sbjct: 156 AVSTATANFTSQMYLSPTLPSPPRGALMSDCSTPTM 191
>ref|NP_626291.1| hypothetical protein [Streptomyces coelicolor A3(2)]
gi|7479463|pir||T34874 hypothetical protein SC3A3.09 -
Streptomyces coelicolor gi|5738519|emb|CAB52866.1|
hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 467
Score = 32.7 bits (73), Expect = 2.1
Identities = 31/112 (27%), Positives = 46/112 (40%), Gaps = 12/112 (10%)
Frame = -3
Query: 370 RSITAHRLALRMCLTGFAFDSMT**PESHSHDTP---------RASMTGWS---DPHS*R 227
R+ TA R+ALR LTG P + H P RA + GW+ DP +
Sbjct: 219 RTFTAERVALRNLLTGLE------PPHTARHRNPFREWIGALIRADVHGWTNPGDPGAAA 272
Query: 226 H*RMRASRAQHSRSGVGARSGGFATCRPAVFASECILCAVWEEPPQHERCVR 71
R + H+ +GV A A+FA+ + A ++ P C+R
Sbjct: 273 EQAHRDATLSHTANGVHA----------AMFAAAVVAAAAPDDAPDVHACLR 314
