Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002412A_C01 KCC002412A_c01
(354 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A39369 homeotic protein BarH1 - fruit fly (Drosophila anana... 38 0.005
sp|P22544|HM1D_DROAN Homeobox protein B-H1 gi|103027|pir||S13367... 38 0.006
ref|NP_887493.1| conserved hypothetical protein [Bordetella bron... 40 0.008
gb|AAF66419.1|AF246990_1 flagellar autotomy protein Fa1p [Chlamy... 32 0.026
ref|NP_883178.1| conserved hypothetical protein [Bordetella para... 38 0.032
>pir||A39369 homeotic protein BarH1 - fruit fly (Drosophila ananassae)
gi|156976|gb|AAA28381.1| BarH1
Length = 604
Score = 38.1 bits (87), Expect(2) = 0.005
Identities = 19/34 (55%), Positives = 23/34 (66%)
Frame = +3
Query: 252 AAAAVVRARSTGVTTRSASAAAARALAAGAGGGG 353
AAAA AR++ +A+AAAA A AAG GGGG
Sbjct: 221 AAAAAAAARNSAAAAAAAAAAAASAAAAGGGGGG 254
Score = 34.7 bits (78), Expect = 0.35
Identities = 21/47 (44%), Positives = 27/47 (56%)
Frame = +3
Query: 213 SSSMQQCCHLVGPAAAAVVRARSTGVTTRSASAAAARALAAGAGGGG 353
+++MQQ H AAAA R S +A+AAA+ A A G GGGG
Sbjct: 212 AAAMQQ--HYAAAAAAAAAR-NSAAAAAAAAAAAASAAAAGGGGGGG 255
Score = 21.9 bits (45), Expect(2) = 0.005
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Frame = +2
Query: 155 SPPPPQVLLENQTEPQPRQQ-----QQHAAVLP 238
+PPPP L Q+ P P HA V P
Sbjct: 160 APPPPLHHLHPQSHPHPHSHPHSHPHPHALVHP 192
>sp|P22544|HM1D_DROAN Homeobox protein B-H1 gi|103027|pir||S13367 Om(1D) protein - fruit
fly (Drosophila ananassae) gi|7147|emb|CAA40011.1|
Om(1D) [Drosophila ananassae]
Length = 606
Score = 38.1 bits (87), Expect(2) = 0.006
Identities = 19/34 (55%), Positives = 23/34 (66%)
Frame = +3
Query: 252 AAAAVVRARSTGVTTRSASAAAARALAAGAGGGG 353
AAAA AR++ +A+AAAA A AAG GGGG
Sbjct: 221 AAAAAAAARNSAAAAAAAAAAAASAAAAGGGGGG 254
Score = 34.7 bits (78), Expect = 0.35
Identities = 21/47 (44%), Positives = 27/47 (56%)
Frame = +3
Query: 213 SSSMQQCCHLVGPAAAAVVRARSTGVTTRSASAAAARALAAGAGGGG 353
+++MQQ H AAAA R S +A+AAA+ A A G GGGG
Sbjct: 212 AAAMQQ--HYAAAAAAAAAR-NSAAAAAAAAAAAASAAAAGGGGGGG 255
Score = 21.6 bits (44), Expect(2) = 0.006
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Frame = +2
Query: 155 SPPPPQVLLENQTEPQPR-----QQQQHAAVLP 238
+PPPP L Q+ P P HA V P
Sbjct: 160 APPPPLHHLHPQSHPHPHPHPHSHPHPHALVHP 192
>ref|NP_887493.1| conserved hypothetical protein [Bordetella bronchiseptica]
gi|33567530|emb|CAE31443.1| conserved hypothetical
protein [Bordetella bronchiseptica]
Length = 532
Score = 40.0 bits (92), Expect = 0.008
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Frame = -3
Query: 352 PPPPAPAASARAAAAD--------ALRVVTPVLRARTTAAAAGPTRWQHCCMLLLLPGLG 197
PPPPAPAA+A AAAA P LR R T RW + ++ GL
Sbjct: 374 PPPPAPAATAEAAAASPTIIPLAPPAEAAPPALRKRLTGRL---RRWH---LKVIDEGLR 427
Query: 196 FGLVLQQDLRRRWRARAAHRPHGVVAADNSVPHSQV 89
FG L+ + R R R +G+ A++ +P +++
Sbjct: 428 FG-ALELEARHELRKRVKRLRYGLSFAESLLPAARL 462
>gb|AAF66419.1|AF246990_1 flagellar autotomy protein Fa1p [Chlamydomonas reinhardtii]
Length = 1787
Score = 32.0 bits (71), Expect(2) = 0.026
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +3
Query: 255 AAAVVRARSTGVTTRSASAAAARALAAGAGGGG 353
AAA R TG T +A+A AA A AGAG G
Sbjct: 129 AAAGAAQRPTGTTAAAAAAGAAGATGAGAGAAG 161
Score = 31.2 bits (69), Expect = 3.9
Identities = 25/73 (34%), Positives = 29/73 (39%)
Frame = -2
Query: 353 ATAACASSQRTCSSGGCTSGCHAGTAGTDYCGGCRTHQMAALLHAAAAAGVGVRSGSPAG 174
A AA ++QR +G + AG AG G M A A AAG G G
Sbjct: 127 AGAAAGAAQRP--TGTTAAAAAAGAAGATGAGAGAAGGMGAAAGATGAAGAGAAGAGRGG 184
Query: 173 PAAAVASTCGAPP 135
P VA GA P
Sbjct: 185 P---VAPGTGAGP 194
Score = 25.4 bits (54), Expect(2) = 0.026
Identities = 18/53 (33%), Positives = 25/53 (46%)
Frame = +1
Query: 82 HGPPGSEVRYCQLPLRHVGGAPHVLATAAAGPAGEPDRTPTPAAAAACSSAAI 240
+GPP + ++ +R GG P V A GPAG+ P A SAA+
Sbjct: 75 YGPPTAP----RVDMRGPGGYP-VPPRATVGPAGQRAGATGPVAGGVRGSAAM 122
>ref|NP_883178.1| conserved hypothetical protein [Bordetella parapertussis]
gi|33565613|emb|CAE40259.1| conserved hypothetical
protein [Bordetella parapertussis]
Length = 532
Score = 38.1 bits (87), Expect = 0.032
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Frame = -3
Query: 352 PPPPAPAASARAAAAD--------ALRVVTPVLRARTTAAAAGPTRWQHCCMLLLLPGLG 197
PPPPAPAA+A AA A P LR R T RW + ++ GL
Sbjct: 374 PPPPAPAATAEAAPASPTIIPLAPPAEAAPPALRKRLTGRL---RRWH---LKVIDEGLR 427
Query: 196 FGLVLQQDLRRRWRARAAHRPHGVVAADNSVPHSQV 89
FG L+ + R R R +G+ A++ +P +++
Sbjct: 428 FG-ALELEARHELRKRVKRLRYGLSFAESLLPAARL 462
