KCC002407A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002407A_C01 KCC002407A_c01
ggggcgtgccacgcagccactgggcggaggcgcgcgcaacccatttccattcttttgcac
attcgatacggtaatatccaATCTGTCCTGAACCAGGATGGCAAGATTGATGCGTGAGGG
ACGGAAGACGAGTTGGCAGGACGTTTGCTGGCAGGTGCAAGGTGTGAGCTTGGTTTGTCT
GTGACAAGGGAAGGACGTGGTTGCTCAAACCATTTTATGGTGCAGTCACGGTACGCCTCG
CAGCCTCGCGCCATCACAGGTGTGGGCAATGCTTTGCGGGCAGACTGCTCTGTCTGGGGG
TGCTCGCCATAGTGAGACGGATGCTGTCTGATTGTACCTGATACAACTGTACACGTATAT
TAGCGGTGCTGAGCGGCACTTCGGCCGACCGTGCAATGGGGCCGGGCGCCTCCCGTGGGC
ACGACCTCGCCCTGGCCTGAGACATGCGTTTAACGTCCAATGCCTGCGGGAtagaggctg
tgtaatatagatgcactgaacaaacaaacaaacaaaaacaaaaaaaaaaaaaaaactcga
gactagttctc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002407A_C01 KCC002407A_c01
         (551 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T33656 hypothetical protein T04C4.1 - Caenorhabditis elegans      33  2.6
ref|NP_507515.1| putative protein, with 2 coiled coil-4 domains,...    33  2.6
gb|AAO91702.1| Hypothetical protein T04C4.1b [Caenorhabditis ele...    33  2.6
ref|NP_500178.2| putative protein of bilaterial origin (4C999) [...    33  2.6
emb|CAC18567.2| xylosyltransferase II [Mus musculus]                   33  3.4

>pir||T33656 hypothetical protein T04C4.1 - Caenorhabditis elegans
          Length = 883

 Score = 33.1 bits (74), Expect = 2.6
 Identities = 17/64 (26%), Positives = 25/64 (38%)
 Frame = -3

Query: 198 TSFPCHRQTKLTPCTCQQTSCQLVFRPSRINLAILVQDRLDITVSNVQKNGNGLRAPPPS 19
           T FPCHR    TP     + C     P  +   +++ D   +TV  +   G+     P  
Sbjct: 734 TDFPCHRSATATPSQSTSSMCDPAMNPENV---LIIADIEQLTVKVLSTEGSDEVTSPSE 790

Query: 18  GCVA 7
             VA
Sbjct: 791 SIVA 794

>ref|NP_507515.1| putative protein, with 2 coiled coil-4 domains, of bilaterial
           origin (181.9 kD) (5S418) [Caenorhabditis elegans]
           gi|11065658|emb|CAC14406.1| Hypothetical protein
           Y59A8B.1 [Caenorhabditis elegans]
          Length = 1641

 Score = 33.1 bits (74), Expect = 2.6
 Identities = 21/71 (29%), Positives = 33/71 (45%)
 Frame = -1

Query: 320 PSHYGEHPQTEQSARKALPTPVMARGCEAYRDCTIKWFEQPRPSLVTDKPSSHLAPASKR 141
           PS+Y +HP          P P M+ G   Y       + QPRP+ VT +P + + P  + 
Sbjct: 138 PSYYIQHP----------PPPSMSNGAPYYPHMNPSPYYQPRPNYVT-QPPAPIIPPPQP 186

Query: 140 PANSSSVPHAS 108
           P  ++S   A+
Sbjct: 187 PVMTASAAAAA 197

>gb|AAO91702.1| Hypothetical protein T04C4.1b [Caenorhabditis elegans]
          Length = 906

 Score = 33.1 bits (74), Expect = 2.6
 Identities = 17/64 (26%), Positives = 25/64 (38%)
 Frame = -3

Query: 198 TSFPCHRQTKLTPCTCQQTSCQLVFRPSRINLAILVQDRLDITVSNVQKNGNGLRAPPPS 19
           T FPCHR    TP     + C     P  +   +++ D   +TV  +   G+     P  
Sbjct: 757 TDFPCHRSATATPSQSTSSMCDPAMNPENV---LIIADIEQLTVKVLSTEGSDEVTSPSE 813

Query: 18  GCVA 7
             VA
Sbjct: 814 SIVA 817

>ref|NP_500178.2| putative protein of bilaterial origin (4C999) [Caenorhabditis
           elegans] gi|22532778|gb|AAC68908.3| Hypothetical protein
           T04C4.1a [Caenorhabditis elegans]
          Length = 907

 Score = 33.1 bits (74), Expect = 2.6
 Identities = 17/64 (26%), Positives = 25/64 (38%)
 Frame = -3

Query: 198 TSFPCHRQTKLTPCTCQQTSCQLVFRPSRINLAILVQDRLDITVSNVQKNGNGLRAPPPS 19
           T FPCHR    TP     + C     P  +   +++ D   +TV  +   G+     P  
Sbjct: 757 TDFPCHRSATATPSQSTSSMCDPAMNPENV---LIIADIEQLTVKVLSTEGSDEVTSPSE 813

Query: 18  GCVA 7
             VA
Sbjct: 814 SIVA 817

>emb|CAC18567.2| xylosyltransferase II [Mus musculus]
          Length = 865

 Score = 32.7 bits (73), Expect = 3.4
 Identities = 37/149 (24%), Positives = 54/149 (35%), Gaps = 9/149 (6%)
 Frame = -3

Query: 432 GRGRAHGRRPAPLHGRPKCRSAPLIYVYSCIRYNQTASVSLWRAPPDRAVCPQSIAHTCD 253
           GR  + GRR     GR +    P+  V   +   Q AS  +  APP  A   Q+++    
Sbjct: 69  GRRGSAGRRHGRWRGRAESPGVPVANVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAA 128

Query: 252 GARLRGVP*LHHKMV*ATTSFPCHRQTKLTPCTCQQT------SCQLVFRPSRINLAILV 91
           G  L G P            FP H  T       Q T       C++V + +   LA   
Sbjct: 129 GEALIGAP-----------GFPQHGDTGSVEGAPQPTDNTFTPKCEIVGKDALSALARAS 177

Query: 90  QDRLDITVSNV---QKNGNGLRAPPPSGC 13
             +    ++NV    + GN +    P  C
Sbjct: 178 TKQCQQEIANVVCLHQAGNLMPKSVPRHC 206



EST assemble image


clone accession position
1 HCL030b01_r AV641225 1 375
2 LC087h01_r AV625097 116 551




Chlamydomonas reinhardtii
Kazusa DNA Research Institute