KCC002405A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002405A_C02 KCC002405A_c02
agCTTAGACATACACACAATAATGGCCACTTTGGGACAGCAGCGCTGCAGTGGCGTTGGC
GCCGAGGCTCGTCGCGCGCGGAAGGCGGTGCTCCCCGCTCGTCTGTGGCAAGAGCCTCTT
CAGCAGCCGCCCGCGGAGTCCGCTGCACAAGCAGGGTGTCCGTCATGCTGCTGCAGTGGT
CACTGCTCCCGGTCCGGTGTCGCAGCGCTTCGCTCAGGTGGCAGGCAAAGTAGACTTCAA
GGGCGTGCACCATGTCGCTCTGCTGTGCTCTAACCTGGAGCGCGCGCTGGAGTTCTACCA
GGGCATTCTAGGTCTGGAGATTAACCCTGAACGCCCCCACAGCAAGCTGCCTTACCGCGG
CGCCTGGTTGTGGATTGGTCCCGAGATGATTCACCTGATGGAGCTGCCCAACCCGGATCC
GCTGACGGGCCGGCCCGAGCACGGCGGCCGCGACCGGCACTTCTGTGTGGGCGTGGCGTC
TATTGAGCCGCTGGTGGAGAAGCTGGAGGCGGCCGGGGTGTCATACACCAAGTCCATGAG
CGGCCGCGCGGCGCTGTTCTTCCGCGACCCGGACATGAACTGCCTGGAGTGCGTGGAGAT
GGAGTCGTGGCGCTGAAGCACCCTCATATACGTGCAGCCGGCGCGGGGGTGGGGGGCAGC
TGGACACAACATGAAGCAGCCCGCACTTGACGAGCAGTCTTGTGACGCACCTGGTCGCCT
TGTGACGATACTTAACCCGGCTCTGGAGGAGGAGTGACATGGCGACAATGCAGCTTGGGG
AGGCCTGGACAGGATGGGCTGCCGCTTAAGGAAGGAAGGCGGCTCGTGGCGGTGGTGATA
GCGAGGAGAACAATATCACGGCGAAGCGAAGAGAACTGCAGCAGCTTGGCATCTCTCAAT
ATCCCTGGTGACGCATGCGCGCACGCTCGAATGCGGTTGGGCTGGTGTGGTGTGTCCCCC
TGGGCTGCGTCGCCGGCGTCGGCCATCATCTGTGCAGCTGCTTCACAGCCCCGGGCCGGG
CGCGGAGGCGGAAGCAAGCTGGTGCCAGTAACAGTGAATAAGTGATGATGGCGGTGGTGG
CGGCCGCCCAGGCGTTGAGTGATGCGCCCCGCTTGGTAGCCGCGTAGGCACCATGACAGA
GCGACTCGACAGGGTGGCTGGGTGAATGCCAAATCCGTGCGCGGCGGGGCTGTATGATGA
TAATGTACTGAGTTTCTTGAGCGGTTTGGCGTTGGCGTCGGTGTTGCCATTCGTTCGCGT
GTGATGGTAGGCTGCACGCGGCTTCAAGTTTATGTGCACGTTGATGACTGGTAGCGTGCA
GTCCGTTTCCAGTCGGCACGGAGGTCCTCAAGTAGTAAGGCGCCTGCTATTGTGCTCTCC
CTGAGGTCACTGGCGTGTAGACGGTCGGGCAAGGCAGGGCAGTACTTGATGTACTAGTAT
TGGTTGGCAGAGGTTGCAGGCGTAGTTTACAGGCGTACGATGGTTCCAGAGAGAAACACA
TCCCCAAAGCTGAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002405A_C02 KCC002405A_c02
         (1515 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_200514.1| expressed protein [Arabidopsis thaliana] gi|877...   189  1e-46
dbj|BAC79640.1| unknown protein [Oryza sativa (japonica cultivar...   172  1e-41
ref|NP_682488.1| ORF_ID:tll1698~hypothetical protein [Thermosyne...    80  7e-14
pir||C96833 hypothetical protein F18B13.24 [imported] - Arabidop...    71  6e-11
ref|NP_565231.1| glyoxalase family protein (lactoylglutathione l...    71  6e-11

>ref|NP_200514.1| expressed protein [Arabidopsis thaliana] gi|8777444|dbj|BAA97034.1|
           gb|AAD55473.1~gene_id:MHM17.18~similar to unknown
           protein [Arabidopsis thaliana]
           gi|21594695|gb|AAM66034.1| unknown [Arabidopsis
           thaliana]
          Length = 197

 Score =  189 bits (480), Expect = 1e-46
 Identities = 85/120 (70%), Positives = 96/120 (79%)
 Frame = +2

Query: 242 GVHHVALLCSNLERALEFYQGILGLEINPERPHSKLPYRGAWLWIGPEMIHLMELPNPDP 421
           GVHHV LLC NLER+LEFYQ ILGLEIN  RPH KLPYRGAWLW+G EMIHLMELPNPDP
Sbjct: 78  GVHHVGLLCENLERSLEFYQNILGLEINEARPHDKLPYRGAWLWVGSEMIHLMELPNPDP 137

Query: 422 LTGRPEHGGRDRHFCVGVASIEPLVEKLEAAGVSYTKSMSGRAALFFRDPDMNCLECVEM 601
           LTGRPEHGGRDRH C+ +  +  L E L+ AG++YT S SGR A+F RDPD N LE  ++
Sbjct: 138 LTGRPEHGGRDRHACIAIRDVSNLKEILDKAGIAYTMSKSGRPAIFTRDPDANALEFTQV 197

>dbj|BAC79640.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 164

 Score =  172 bits (437), Expect = 1e-41
 Identities = 75/119 (63%), Positives = 92/119 (77%)
 Frame = +2

Query: 245 VHHVALLCSNLERALEFYQGILGLEINPERPHSKLPYRGAWLWIGPEMIHLMELPNPDPL 424
           +HHV +LC NLER++ FY+ +LGL++NP RP  KLPYRGAWLW+G EMIHLMELPNPDPL
Sbjct: 46  IHHVGILCENLERSMAFYKDLLGLKVNPARPTDKLPYRGAWLWVGSEMIHLMELPNPDPL 105

Query: 425 TGRPEHGGRDRHFCVGVASIEPLVEKLEAAGVSYTKSMSGRAALFFRDPDMNCLECVEM 601
           TGRPEHGGRDRH C+ +  +  L E  + AG+ YT S SGR A+F RDPD N LE  ++
Sbjct: 106 TGRPEHGGRDRHTCMAIKDVLKLKEIFDKAGIKYTLSKSGRPAIFARDPDGNALEFTQV 164

>ref|NP_682488.1| ORF_ID:tll1698~hypothetical protein [Thermosynechococcus elongatus
           BP-1] gi|22295423|dbj|BAC09250.1|
           ORF_ID:tll1698~hypothetical protein [Thermosynechococcus
           elongatus BP-1]
          Length = 117

 Score = 80.5 bits (197), Expect = 7e-14
 Identities = 47/117 (40%), Positives = 69/117 (58%)
 Frame = +2

Query: 251 HVALLCSNLERALEFYQGILGLEINPERPHSKLPYRGAWLWIGPEMIHLMELPNPDPLTG 430
           HVA+  +NLERA  FY+G+LGL    +RP   L + G W  IG   IHL++       T 
Sbjct: 5   HVAINVTNLERAAAFYEGVLGLTA-VDRP---LKFPGRWYQIGAVEIHLIQAEKVVD-TC 59

Query: 431 RPEHGGRDRHFCVGVASIEPLVEKLEAAGVSYTKSMSGRAALFFRDPDMNCLECVEM 601
           + +  GR+ HF +GV  +  L ++L AA + + +S SGRAA+F  DPD N +E  ++
Sbjct: 60  QDQRWGRNPHFALGVTDLASLEQRLVAAQIPWQRSASGRAAIFVADPDGNLIELSQL 116

>pir||C96833 hypothetical protein F18B13.24 [imported] - Arabidopsis thaliana
           gi|5902371|gb|AAD55473.1|AC009322_13 Hypothetical
           protein [Arabidopsis thaliana]
          Length = 208

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 39/136 (28%), Positives = 67/136 (48%), Gaps = 5/136 (3%)
 Frame = +2

Query: 215 QVAGKVDFKGVHHVALLCSNLERALEFYQGILGLEINPERPHSKLPYRGAWLWIGPEMIH 394
           +    +  K ++H++LLC ++E ++ FYQ +LG    P R      + GAWL+     IH
Sbjct: 45  ETGNPLHIKSLNHISLLCRSVEESISFYQNVLGFL--PIRRPDSFDFDGAWLFGHGIGIH 102

Query: 395 LMELPNPDPLTGRPEHGGRDRHFCVGVASIEPLVEKLEAAGVSYTKSMSGRAA-----LF 559
           L++ P P+ L  + E   +D H      S+E + +KL+   + Y +++          LF
Sbjct: 103 LLQSPEPEKLLKKTEINPKDNHISFQCESMEAVEKKLKEMEIEYVRAVVEEGGIQVDQLF 162

Query: 560 FRDPDMNCLECVEMES 607
           F DPD   +E    +S
Sbjct: 163 FHDPDAFMIEICNCDS 178

>ref|NP_565231.1| glyoxalase family protein (lactoylglutathione lyase family protein)
           [Arabidopsis thaliana] gi|21554257|gb|AAM63332.1|
           unknown [Arabidopsis thaliana]
          Length = 167

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 39/136 (28%), Positives = 67/136 (48%), Gaps = 5/136 (3%)
 Frame = +2

Query: 215 QVAGKVDFKGVHHVALLCSNLERALEFYQGILGLEINPERPHSKLPYRGAWLWIGPEMIH 394
           +    +  K ++H++LLC ++E ++ FYQ +LG    P R      + GAWL+     IH
Sbjct: 4   ETGNPLHIKSLNHISLLCRSVEESISFYQNVLGFL--PIRRPDSFDFDGAWLFGHGIGIH 61

Query: 395 LMELPNPDPLTGRPEHGGRDRHFCVGVASIEPLVEKLEAAGVSYTKSMSGRAA-----LF 559
           L++ P P+ L  + E   +D H      S+E + +KL+   + Y +++          LF
Sbjct: 62  LLQSPEPEKLLKKTEINPKDNHISFQCESMEAVEKKLKEMEIEYVRAVVEEGGIQVDQLF 121

Query: 560 FRDPDMNCLECVEMES 607
           F DPD   +E    +S
Sbjct: 122 FHDPDAFMIEICNCDS 137



EST assemble image


clone accession position
1 MX220f06_r BP090220 1 449
2 HCL029c11_r AV641179 33 530
3 LC003c06_r AV619063 319 864
4 LC059b01_r AV623114 392 908
5 MX259h05_r BP092841 411 749
6 LC074b07_r AV624187 518 997
7 LC001h05_r AV618958 528 1049
8 LC023c04_r AV620523 949 1516




Chlamydomonas reinhardtii
Kazusa DNA Research Institute