KCC002403A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002403A_C01 KCC002403A_c01
gttcgctgtatgccaagctgaagcgggatgagatccccgtgaacgtgtcggagcgcctga
ctgcggtctacgaggacgaaGATGAGGACAGGAGCTCGGACCCGGGGTCCGATGGGGAGC
AGGAGAGTGAGGAAGGGGAACCCCGCATGTTGCGGGATCAGCACAAGCAGGTGCAACGTG
CCAAGCGACCACGGGATGACACGCTGGACCGCCCAGGCTCCTCCAAGAAACAGACGCCTG
GCGATGATGGAGCTGGCGCGGCTGGTGGCGATGCGGATATGGCGGAGGCGGAGGCCTTCA
AGAACAACCTCATCAACGCCCTCATGCACAACATCTCCGGCGCGCCGGGCAGCCACCCCC
CGGGTATGATTCCCACACCTGGCAGCCAGCCGCCTATGCTGATGATCCCCACGCCGGGCG
GCACGGGTCCCGGCAGTGCACGCGGCGCCCTGAAGCAGCAGAGCAGTCTGCCTTCCGCGT
CTAGCGTGCCAGCCGATGAGGAGGTGCGGGCCAAAGTCCGCGAGCAGCTGGGGCAGGCGC
TGCAGCGAGCCATGGATGAGCTCAAGGCGGAGGGCTATACCGAAGCGCTTCCGGTGCCGA
CAGAGGTGGCCGCCGAGGTTGAGCTGGAGCTCTTCAAGTTGCACGAGAGCTCGGTTTCCA
AGGACTACAAGGCCAAGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002403A_C01 KCC002403A_c01
         (678 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK53449.1| unknown [Streptomyces aureofaciens]                     51  2e-05
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    48  1e-04
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ...    48  2e-04
ref|NP_896691.1| possible N-terminal part of IF-2 [Synechococcus...    47  2e-04
gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]                       47  3e-04

>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
          Length = 579

 Score = 50.8 bits (120), Expect = 2e-05
 Identities = 58/201 (28%), Positives = 68/201 (32%), Gaps = 2/201 (0%)
 Frame = -1

Query: 633 RAPAQPRRPPL--SAPEALRYSPPP*AHPWLAAAPAPAARGLWPAPPHRLAR*TRKADCS 460
           R  ++P  PP   +AP     SP P A P  AAAP PA R   P PP        +   +
Sbjct: 426 RTGSRPASPPTRPTAP-----SPAPAAPPRAAAAPTPARR---PPPPPTPPVPRARRGPA 477

Query: 459 AASGRRVHCRDPCRPAWGSSA*AAGCQVWESYPGGGCPARRRCCA*GR**GCS*RPPPPP 280
           A +GR    RD            AG +   S PG   P RRR            RPPPP 
Sbjct: 478 AGNGRPPSTRDR----------TAGTRAPASPPGAPPPVRRR------------RPPPPR 515

Query: 279 YPHRHQPRQLHHRQASVSWRSLGGPACHPVVAWHVAPACADPATCGVPLPHSPAPHRTPG 100
            P  H P             S   P+          P    P          P P   PG
Sbjct: 516 APPPHHP-------------SARNPSAR------ATPRPRPPPRPSAAARPEPPPRAAPG 556

Query: 99  PSSCPHLRPRRPQSGAPTRSR 37
           PS      P  P+S +P   R
Sbjct: 557 PSGTAPGPPSGPRSPSPLHRR 577

 Score = 45.4 bits (106), Expect = 8e-04
 Identities = 62/215 (28%), Positives = 67/215 (30%), Gaps = 26/215 (12%)
 Frame = -1

Query: 630 APAQPRRPPLSAPEALR--------------------------YSPPP*AHPWLAAAPAP 529
           A  Q  RPP  AP   R                           SP P A P  AAAP P
Sbjct: 398 ARPQHARPPARAPPGPRPAPTRAASTPARTGSRPASPPTRPTAPSPAPAAPPRAAAAPTP 457

Query: 528 AARGLWPAPPHRLAR*TRKADCSAASGRRVHCRDPCRPAWGSSA*AAGCQVWESYPGGGC 349
           A R   P PP        +   +A +GR    RD            AG +   S PG   
Sbjct: 458 ARR---PPPPPTPPVPRARRGPAAGNGRPPSTRDR----------TAGTRAPASPPGAPP 504

Query: 348 PARRRCCA*GR**GCS*RPPPPPYPHRHQPRQLHHRQASVSWRSLGGPACHPVVAWHVAP 169
           P RRR            RPPPP  P  H P     R  S        P   P  A     
Sbjct: 505 PVRRR------------RPPPPRAPPPHHPSA---RNPSARATPRPRPPPRPSAA----- 544

Query: 168 ACADPATCGVPLPHSPAPHRTPGPSSCPHLRPRRP 64
           A  +P     P P   AP    GP S   L  R P
Sbjct: 545 ARPEPPPRAAPGPSGTAPGPPSGPRSPSPLHRRTP 579

 Score = 32.3 bits (72), Expect = 6.7
 Identities = 58/214 (27%), Positives = 66/214 (30%), Gaps = 13/214 (6%)
 Frame = -1

Query: 627 PAQPRRPPLSAPEALRYSPPP*AHPWLAAAPAPAARGLWPAPPHRLAR*TRKADCSAASG 448
           PA+  R     P   R   PP           PA     PA P R A    +A    A G
Sbjct: 313 PAERHRARADDPAQRRRGRPPATTGPRTGPAGPAG----PAGPRRSA--PGRARRIRARG 366

Query: 447 RRVHCRDPCRPAWGSSA*AAGCQVWESYPGGGCPARRRCCA*GR**GCS*RPPPPPYPHR 268
            R  C   CR          G  V    P  G  A R     G       RPP    P  
Sbjct: 367 SRCRC---CR----------GAGVEPEGPANGAGAGRPTATSGYARPQHARPPARAPPG- 412

Query: 267 HQPRQLHHRQASVSWRSLGGPACHPVVAWHVAPACADPATCGV---------PLPHSPAP 115
             PR    R AS   R+   PA  P      +PA A P              P P  P P
Sbjct: 413 --PRPAPTRAASTPARTGSRPASPPTRPTAPSPAPAAPPRAAAAPTPARRPPPPPTPPVP 470

Query: 114 HRTPGPSS----CPHLRPRRPQSGAPTRSRGSHP 25
               GP++     P  R R   + AP    G+ P
Sbjct: 471 RARRGPAAGNGRPPSTRDRTAGTRAPASPPGAPP 504

 Score = 32.0 bits (71), Expect = 8.8
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 663 PWKPSSR-AT*RAPAQPRRPPLSAPEALRYSPPP*AHPW-LAAAPAPAARGLWPAPPHR 493
           P  PS+R  + RA  +PR PP  +  A R  PPP A P     AP P +    P+P HR
Sbjct: 519 PHHPSARNPSARATPRPRPPPRPS-AAARPEPPPRAAPGPSGTAPGPPSGPRSPSPLHR 576

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 62/222 (27%), Positives = 77/222 (33%), Gaps = 5/222 (2%)
 Frame = -1

Query: 672 PCSPWKPSSRAT*RAPAQPRR--PPLSAPEALRYSPPP*AHPWLAAAPAPAARGLWPAPP 499
           P +P +P++     AP  P    PP +AP      PPP   P  AA PAP      P PP
Sbjct: 61  PAAPARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPP--AARPAPP-----PPPP 113

Query: 498 HRLAR*TRKADCSAASGRRVHCRDPCRPAWGSSA*AAGCQVWESYPGGGCPARRRCCA*G 319
              A   ++     A+  + H   P  PA  +   A       + P    P         
Sbjct: 114 PPAA--PKQPSPPPAAAPQQHAPTPPPPAPPA---ARPAPTPPAPPPAAAPQHA------ 162

Query: 318 R**GCS*RPPPPPYPHRHQPRQLHHRQASVSWRSLGGPACHPVVAWHVAPA-CADPATCG 142
                   PPPPP   R  P       A        GPA  P  A    P   A P    
Sbjct: 163 -------PPPPPPPAARPTPTPPPPPPA--------GPAARPTPAPTATPTPVAPPPAAP 207

Query: 141 VPLPHSPAPHRTPG--PSSCPHLRPRRPQSGAPTRSRGSHPA 22
              P SPAP  TP   P+  P   P    + AP  + G+ PA
Sbjct: 208 TARPGSPAPAATPAPTPTPAPTATPAPTATPAPGSTPGAPPA 249

 Score = 41.6 bits (96), Expect = 0.011
 Identities = 60/222 (27%), Positives = 75/222 (33%), Gaps = 5/222 (2%)
 Frame = -1

Query: 666 SPWKPSSRAT*RAPAQPRRPPLSAPEALRYSPPP*AHPWLAAAPAPAARGLWPAPPHRLA 487
           +P  P+  A   AP  P  PP +AP+   ++PPP   P  AA P P      P PP    
Sbjct: 135 TPPPPAPPAARPAPTPPAPPPAAAPQ---HAPPPPPPP--AARPTPT-----PPPPPPAG 184

Query: 486 R*TRKADCSAASGRRVHCRDPCRPAW--GSSA*AAGCQVWESYPGGGCPARRRCCA*GR* 313
              R      A+   V    P  P    GS A AA      +      PA     A G  
Sbjct: 185 PAARPTPAPTATPTPV-APPPAAPTARPGSPAPAATPAPTPTPAPTATPAPTATPAPGST 243

Query: 312 *GCS*RPPPPPYPHRHQPRQLHHRQASVSWRSLGGPACHPVVAWHVAPACADPATCGVPL 133
            G      P   P   +P       +  +  +   P   P       P    P     P 
Sbjct: 244 PGAPPAGRPGAPPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGGTATPPSGRPGPASTPA 303

Query: 132 PHS--PAPHRTPGPSSCPHLRPRRPQSG-APTRSRGSHPASA 16
           P +  PAP  TP P       P RP +G  P    G+ PA A
Sbjct: 304 PGAATPAPTATPAPGGALTPPPGRPGAGPTPGPQGGTPPAGA 345

 Score = 32.0 bits (71), Expect = 8.8
 Identities = 22/64 (34%), Positives = 27/64 (41%), Gaps = 11/64 (17%)
 Frame = +3

Query: 336 SGAPGSHPPGMIP----------TPGSQPPMLMIPTPGGTG-PGSARGALKQQSSLPSAS 482
           +G PG+ PPG+ P           PG+ P     P PGGT  P S R         P  +
Sbjct: 249 AGRPGAPPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGGTATPPSGR---------PGPA 299

Query: 483 SVPA 494
           S PA
Sbjct: 300 STPA 303

>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
           [Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
           elegans RSR-1 protein (corresponding sequence F28D9.1)
           [Caenorhabditis elegans]
          Length = 601

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 60/202 (29%), Positives = 83/202 (40%), Gaps = 5/202 (2%)
 Frame = +1

Query: 85  RTGARTRGPMGSRRVRKGNPACCGISTSRCNVPSDHGMTRWTAQAPPRNRRLAMMELARL 264
           R  +R++ P    R R+        S S+   P+     +  +++PP  RR +       
Sbjct: 333 RAKSRSKSPPAPARRRRSP------SASKSPPPAPK-RAKSRSKSPPARRRRSPSASKSP 385

Query: 265 VAMRIWRRRRPSRTTSSTPSCTTSPARRAATPRV----*FPHLAASRLC**SPRRAARVP 432
            A R  RRR PS++ S  P     PARR  +P        P  A SR       R  R P
Sbjct: 386 PAPR--RRRSPSKSRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRRRRSP 443

Query: 433 AVHAAP*SSRAVCLPRLACQPMRRCGPKSASSWG-RRCSEPWMSSRRRAIPKRFRCRQRW 609
           +   +P   R     +    P RR  P  + S   RR   P  + RRR  P+R R  +R 
Sbjct: 444 SQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRR- 502

Query: 610 PPRLSWSSSSCTRARFPRTTRP 675
             R S SSSS +R+  P   RP
Sbjct: 503 --RRSPSSSSRSRSPPPPPRRP 522

>ref|NP_896691.1| possible N-terminal part of IF-2 [Synechococcus sp. WH 8102]
           gi|33638816|emb|CAE07113.1| possible N-terminal part of
           IF-2 [Synechococcus sp. WH 8102]
          Length = 496

 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 66/234 (28%), Positives = 84/234 (35%), Gaps = 18/234 (7%)
 Frame = -1

Query: 672 PCSPWKPSSRAT*RAPAQPRRPPLSAPEALRYSPPP*AHPWLAAAPAPAARGLWPAPPHR 493
           P +P KP++ A   APA+P     +AP A     P    P  AAAP P  +   PA P  
Sbjct: 107 PAAPAKPAAPA---APARPAPARAAAPAA-----PAKPVPRPAAAPPPRPQ---PAKPEV 155

Query: 492 LAR*TRKADCSAASGRRVHCRDPCRP-------AWGSSA*AAGCQVWESYPGGGCPARRR 334
           +++  + A  + AS        P RP       A  + A     +   + P    PA  +
Sbjct: 156 VSK-PKPATPATASAPSKPTAPPARPTVVKPTVAKPTVAKPTVAKPTVAKPAPAKPAAAK 214

Query: 333 CCA*GR**GCS*RPPPP-PYPHRHQPRQLHHRQASVSWRSLGG----------PACHPVV 187
                       RP P  P P R    Q   R A+   R   G          P   P  
Sbjct: 215 --------PAPARPAPARPAPARPSADQPKPRPAAAPSRPTPGAGQKPQIVSRPGSAPRP 266

Query: 186 AWHVAPACADPATCGVPLPHSPAPHRTPGPSSCPHLRPRRPQSGAPTRSRGSHP 25
                P    PA  G P+   P    TP P       PRRP +GAPTRS    P
Sbjct: 267 GAPTRPGAPAPARPGAPVKAGPPTRPTPRPELVGKPVPRRPGTGAPTRSGAGAP 320

>gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]
          Length = 1325

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 62/211 (29%), Positives = 86/211 (40%), Gaps = 2/211 (0%)
 Frame = -3

Query: 631  SSSSTSAATSVGTGSASV*PSALSSSM-ARCSACPSCSRTLA-RTSSSAGTLDAEGRLLC 458
            SSS+ SA++S    S+S  PSA SSS  +  S+ PS S + A  +SSSA +  +      
Sbjct: 804  SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS 863

Query: 457  CFRAPRALPGPVPPGVGIISIGGWLPGVGIIPGGWLPGAPEMLCMRALMRLFLKASASAI 278
               AP A     P      S           P      AP              +S+SA 
Sbjct: 864  SSSAPSASSSSAPSS----SSSAPSASSSSAPSSSSSSAPSA------------SSSSAP 907

Query: 277  SASPPAAPAPSSPGVCFLEEPGRSSVSSRGRLARCTCLC*SRNMRGSPSSLSCSPSDPGS 98
            S+S  +AP+ SS            S SS    +  +    S +   +PSS S +PS   S
Sbjct: 908  SSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSS 967

Query: 97   ELLSSSSSS*TAVRRSDTFTGISSRFSLAYS 5
               SSSSS+ +A   S   +  SS  S + S
Sbjct: 968  SAPSSSSSAPSASSSSAPSSSSSSAPSASSS 998

 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 57/193 (29%), Positives = 79/193 (40%), Gaps = 3/193 (1%)
 Frame = -3

Query: 631  SSSSTSAATSVGTGSASV*PSALSSSM-ARCSACPSCSRTLARTSSSAGTLDAEGRLLCC 455
            SSS+ SA++S    S+S  PSA SSS  +  S+ PS S + A +SSS+    A       
Sbjct: 849  SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSS---- 904

Query: 454  FRAPRALPGPVPPGVGIISIGGWLPGVGIIPGGWLPGAPEMLCMRALMRLFLKASASAIS 275
              AP +     P      +                P +       A       +S+SA S
Sbjct: 905  -SAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPS 963

Query: 274  ASPPAAPAPSS--PGVCFLEEPGRSSVSSRGRLARCTCLC*SRNMRGSPSSLSCSPSDPG 101
            AS  +AP+ SS  P       P  SS S+            S +   +PSS S +PS   
Sbjct: 964  ASSSSAPSSSSSAPSASSSSAPSSSSSSAP-----------SASSSSAPSSSSSAPSASS 1012

Query: 100  SELLSSSSSS*TA 62
            S   SSSSS+ +A
Sbjct: 1013 SSAPSSSSSAPSA 1025

 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 58/197 (29%), Positives = 82/197 (41%), Gaps = 2/197 (1%)
 Frame = -3

Query: 646  SCNLKSSSSTSAATSVGTGSASV*PSALSSSM-ARCSACPSCSRTLA-RTSSSAGTLDAE 473
            S +  SSS+ SA++S    S+S  PSA SSS  +  S+ PS S + A  +SSSA +  + 
Sbjct: 677  SASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSS 736

Query: 472  GRLLCCFRAPRALPGPVPPGVGIISIGGWLPGVGIIPGGWLPGAPEMLCMRALMRLFLKA 293
                    AP A     P      S           P      AP              +
Sbjct: 737  SAPSSSSSAPSASSSSAPSS----SSSAPSASSSSAPSSSSSSAPSAS----------SS 782

Query: 292  SASAISASPPAAPAPSSPGVCFLEEPGRSSVSSRGRLARCTCLC*SRNMRGSPSSLSCSP 113
            SA + S+S P+A + S+P       P  SS S+    +       S +   +PSS S +P
Sbjct: 783  SAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAP----SASSSSAPSSSSSAP 838

Query: 112  SDPGSELLSSSSSS*TA 62
            S   S   SSSSS+ +A
Sbjct: 839  SASSSSAPSSSSSAPSA 855

 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 62/211 (29%), Positives = 87/211 (40%), Gaps = 2/211 (0%)
 Frame = -3

Query: 631  SSSSTSAATSVGTGSASV*PSALSSSM-ARCSACPSCSRTLA-RTSSSAGTLDAEGRLLC 458
            SSS+ SA++S    S+S  PSA SSS  +  S+ PS S + A  +SSSA +  +      
Sbjct: 819  SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS 878

Query: 457  CFRAPRALPGPVPPGVGIISIGGWLPGVGIIPGGWLPGAPEMLCMRALMRLFLKASASAI 278
               AP A     P      +           P      AP      A       A +S+ 
Sbjct: 879  SSSAPSASSSSAPSSSSSSA-----------PSASSSSAPSSSSSSAPSASSSSAPSSS- 926

Query: 277  SASPPAAPAPSSPGVCFLEEPGRSSVSSRGRLARCTCLC*SRNMRGSPSSLSCSPSDPGS 98
            S+S P+A + S+P       P  SS S+    +       S +   +PSS S +PS   S
Sbjct: 927  SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAP----SASSSSAPSSSSSAPSASSS 982

Query: 97   ELLSSSSSS*TAVRRSDTFTGISSRFSLAYS 5
               SSSSSS  +   S   +  SS  S + S
Sbjct: 983  SAPSSSSSSAPSASSSSAPSSSSSAPSASSS 1013

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 64/216 (29%), Positives = 89/216 (40%), Gaps = 7/216 (3%)
 Frame = -3

Query: 631  SSSSTSAATSVGTGSASV*PSALSSSM-ARCSACPSCSRTLA-RTSSSAGTLDAEGRLLC 458
            SSS+ SA++S    S+S  PSA SSS  +  S+ PS S + A  +SSSA +  +      
Sbjct: 697  SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS 756

Query: 457  CFRAPRALPGPVPPGVGIISIGGWLPGVGIIPGGWLPGAPEMLCMRALMRLFLKASASAI 278
               AP A     P      S     P          P +       +       +S+SA 
Sbjct: 757  SSSAPSASSSSAPS-----SSSSSAPSAS---SSSAPSSSSSAPSASSSSAPSSSSSSAP 808

Query: 277  SASPPAAPAPSS--PGVCFLEEPGRSS---VSSRGRLARCTCLC*SRNMRGSPSSLSCSP 113
            SAS  +AP+ SS  P       P  SS    +S       +    S +   +PSS S +P
Sbjct: 809  SASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAP 868

Query: 112  SDPGSELLSSSSSS*TAVRRSDTFTGISSRFSLAYS 5
            S   S   SSSSS+ +A   S   +  SS  S + S
Sbjct: 869  SASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSS 904

 Score = 42.7 bits (99), Expect = 0.005
 Identities = 64/226 (28%), Positives = 87/226 (38%), Gaps = 17/226 (7%)
 Frame = -3

Query: 631  SSSSTSAATSVGTGSASV*PSALSSSM--ARCSACPSCSRTLARTSSSAGTLDAEGRLL- 461
            SSS+ SA++S    S+S  PSA SSS   +  S+ PS S + A +SSS+    A      
Sbjct: 864  SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAP 923

Query: 460  --CCFRAPRALPGPVP-------PGVGIISIGGWLPGVGIIPGGWLPGAPEMLCMRALMR 308
                  AP A     P       P     S                P +       +   
Sbjct: 924  SSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSS 983

Query: 307  LFLKASASAISASPPAAPAPSS--PGVCFLEEPGRSSVS---SRGRLARCTCLC*SRNMR 143
                +S+SA SAS  +AP+ SS  P       P  SS +   S       +    S +  
Sbjct: 984  APSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSS 1043

Query: 142  GSPSSLSCSPSDPGSELLSSSSSS*TAVRRSDTFTGISSRFSLAYS 5
             +PSS S +PS   S   SSSSSS  +   S   +  SS  S + S
Sbjct: 1044 SAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSS 1089

 Score = 41.2 bits (95), Expect = 0.014
 Identities = 58/193 (30%), Positives = 76/193 (39%), Gaps = 7/193 (3%)
 Frame = -3

Query: 631  SSSSTSAATSVGTGSASV*PSALSSSM-ARCSACPSCSRTLARTSSSAGTLDAEGRLLCC 455
            SSS+ SA++S    S+S  PSA SSS  +  S+ PS S + A +SSS+            
Sbjct: 943  SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSS----------- 991

Query: 454  FRAPRALPGPVPPGVGIISIGGWLPGVGIIPGGWLPGAPEMLCMRALMRLFLKASASAIS 275
              AP A     P                  P      AP              +S+SA S
Sbjct: 992  --APSASSSSAPSSSSSA------------PSASSSSAPS-------------SSSSAPS 1024

Query: 274  ASPPAAPAPSS--PGVCFLEEPGRS----SVSSRGRLARCTCLC*SRNMRGSPSSLSCSP 113
            AS  +AP+ SS  P       P  S    S SS    +  +    S +   +PSS S +P
Sbjct: 1025 ASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAP 1084

Query: 112  SDPGSELLSSSSS 74
            S   S   SSSSS
Sbjct: 1085 SASSSSAPSSSSS 1097

 Score = 38.1 bits (87), Expect = 0.12
 Identities = 65/223 (29%), Positives = 86/223 (38%), Gaps = 13/223 (5%)
 Frame = -3

Query: 646  SCNLKSSSSTSA----ATSVGTGSASV*PSALSSSM--ARCSACPSCSRTLARTSSSAGT 485
            S +  SSSS+SA    ++S  + S+S  PSA SSS   +  S+ PS S + A +SSS+  
Sbjct: 887  SSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSA 946

Query: 484  LDAEGRLL--CCFRAPRALPGPVPPGVGIISIGGWLPGVGIIPGGWLPGAPEMLCMRALM 311
              A           AP A     P      S           P      AP      A  
Sbjct: 947  PSASSSSAPSSSSSAPSASSSSAPSS----SSSAPSASSSSAPSSSSSSAPSASSSSAP- 1001

Query: 310  RLFLKASASAISASPPAAPAPSS--PGVCFLEEPGRSSVS---SRGRLARCTCLC*SRNM 146
                 +S+SA SAS  +AP+ SS  P       P  SS +   S       +    S + 
Sbjct: 1002 ----SSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASS 1057

Query: 145  RGSPSSLSCSPSDPGSELLSSSSSS*TAVRRSDTFTGISSRFS 17
              +PSS S S     S    SSSSS  +   S   +  SS  S
Sbjct: 1058 SSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSFLS 1100



EST assemble image


clone accession position
1 HCL028g09_r AV641157 1 459
2 LCL031e02_r AV627751 328 678




Chlamydomonas reinhardtii
Kazusa DNA Research Institute