KCC002394A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002394A_C01 KCC002394A_c01
tatgtcaacaggtcctgattagcagCGGGCTGTGGAAGCGGGCCCTCGCCGTCGCCAACA
CCGTGAGCTCCAACAGCTCTGCCGTTGCACGTTCCCGCACTGCCGGTGGTGGTGGCGGCC
CAACCAGTGCTCGTGATGCAAGCGGTGGCCACGAGGGCGGCCATGCCGGCAAACAGCTGC
AGCAGCTGCAGCAGCAACATCAAGAGCAACACCCGCAGCAACCGGTCATTGGAAGTGGCG
GCAGCACCAGCAACAGCCACGACCAAACCGACAACACCAGTGTCTGTGACCCCTCTCCCG
AGCACAGCGGCAGGATGCCGGAGTTGCCACGTTCCAAGCCTTCCAGCCCAGCGACAAGAC
ACGTCAGCGAGCAACAGTGCCCCGGCTTAGCTGTCCTTGTTGGGCGCAACGCTGCCGCTG
CGGCAGCCGCGCCGCCATGCGGTGGTGCCACCACCGCTGTTGCCGACGGCGGCAGCTGCC
GCCGTGTCGGGGTCACGGGCTGCATGGCGAGCACTATGGCGGCGGCGTGCAGCGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002394A_C01 KCC002394A_c01
         (537 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB04121.1| MAZ                                                     47  1e-05
pir||A42170 zinc finger protein MAZ - human (fragment)                 47  1e-05
gb|AAN03800.1|AF489858_1 serum amyloid A activating factor 2 [Ho...    47  1e-05
sp|P56270|MAZ_HUMAN Myc-associated zinc finger protein (MAZI) (P...    47  1e-05
ref|NP_871704.1| putative protein, with a coiled coil-4 domain (...    51  1e-05

>gb|AAB04121.1| MAZ
          Length = 537

 Score = 47.0 bits (110), Expect(2) = 1e-05
 Identities = 37/114 (32%), Positives = 48/114 (41%), Gaps = 25/114 (21%)
 Frame = +1

Query: 37  SGPSPSPTP*APTALPLHVPALPVVVAAQ------PVLVMQAVATRAAMPANSCSS---- 186
           + P+P PTP AP A PL V  LPV+ AAQ            A A  AA PA + +S    
Sbjct: 125 AAPAPPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDT 184

Query: 187 ---------------CSSNIKSNTRSNRSLEVAAAPATATTKPTTPVSVTPLPS 303
                           S+          +  +AAA ATA   PT+ V+V P+ S
Sbjct: 185 AALKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAATAVVAPTSTVAVAPVAS 238

 Score = 34.7 bits (78), Expect = 0.82
 Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 19/173 (10%)
 Frame = +1

Query: 40  GPSPSP--TP*APTALPLHVPALPVVVAAQPVLVMQAVATRAAMPANSCSSCSSNIKSNT 213
           GP P P  +P  P A     P  P  + A P  V+   +       NS      + ++  
Sbjct: 43  GPRPRPPLSPGGPAAAEAMFPVFPCTLLAPPFPVLGLDSRGVGGLMNSFPPPQGHAQNPL 102

Query: 214 RSNRSLE----------------VAAAPATATTKPTTPVSVTPLPSTAAGCRSCHVPSLP 345
           +    L+                  A P T       P+ V  LP  AA   S    +  
Sbjct: 103 QVGAELQSRFFASQGCAQSPFQAAPAPPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAA 162

Query: 346 AQRQDT-SASNSAPA*LSLLGATLPLRQPRRHAVVPPPLLPTAAAAAVSGSRA 501
           A      +A+  APA  S +  T  L+QP      PPP+   AA AA   S A
Sbjct: 163 AAAAAAVAAAPPAPAAASTVD-TAALKQPPAPPPPPPPVSAPAAEAAPPASAA 214

 Score = 23.5 bits (49), Expect(2) = 1e-05
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
 Frame = +3

Query: 306 SGRMPELPRSKPSSPATRHVSEQQCPGLAVLVGR-NAAAAAAAPPCGGATTAVADGGSCR 482
           +GR+P      P+      +S  Q  G     G   A   AAA   GG  T  A G   R
Sbjct: 277 AGRVPSGAMKMPTMVPLSLLSVPQLSGAGGGGGEAGAGGGAAAVAAGGVVTTTASGKRIR 336

Query: 483 R 485
           +
Sbjct: 337 K 337

>pir||A42170 zinc finger protein MAZ - human (fragment)
          Length = 494

 Score = 47.0 bits (110), Expect(2) = 1e-05
 Identities = 37/114 (32%), Positives = 48/114 (41%), Gaps = 25/114 (21%)
 Frame = +1

Query: 37  SGPSPSPTP*APTALPLHVPALPVVVAAQ------PVLVMQAVATRAAMPANSCSS---- 186
           + P+P PTP AP A PL V  LPV+ AAQ            A A  AA PA + +S    
Sbjct: 82  AAPAPPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDT 141

Query: 187 ---------------CSSNIKSNTRSNRSLEVAAAPATATTKPTTPVSVTPLPS 303
                           S+          +  +AAA ATA   PT+ V+V P+ S
Sbjct: 142 AALKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAATAVVAPTSTVAVAPVAS 195

 Score = 33.5 bits (75), Expect = 1.8
 Identities = 42/170 (24%), Positives = 58/170 (33%), Gaps = 17/170 (10%)
 Frame = +1

Query: 43  PSPSPTP*APTALPLHVPALPVVVAAQPVLVMQAVATRAAMPANSCSSCSSNIKSNTRSN 222
           P P  +P  P A     P  P  + A P  V+   +       NS      + ++  +  
Sbjct: 3   PRPPLSPGGPAAAEAMFPVFPCTLLAPPFPVLGLDSRGVGGLMNSFPPPQGHAQNPLQVG 62

Query: 223 RSLE----------------VAAAPATATTKPTTPVSVTPLPSTAAGCRSCHVPSLPAQR 354
             L+                  A P T       P+ V  LP  AA   S    +  A  
Sbjct: 63  AELQSRFFASQGCAQSPFQAAPAPPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAA 122

Query: 355 QDT-SASNSAPA*LSLLGATLPLRQPRRHAVVPPPLLPTAAAAAVSGSRA 501
               +A+  APA  S +  T  L+QP      PPP+   AA AA   S A
Sbjct: 123 AAAVAAAPPAPAAASTVD-TAALKQPPAPPPPPPPVSAPAAEAAPPASAA 171

 Score = 23.5 bits (49), Expect(2) = 1e-05
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
 Frame = +3

Query: 306 SGRMPELPRSKPSSPATRHVSEQQCPGLAVLVGR-NAAAAAAAPPCGGATTAVADGGSCR 482
           +GR+P      P+      +S  Q  G     G   A   AAA   GG  T  A G   R
Sbjct: 234 AGRVPSGAMKMPTMVPLSLLSVPQLSGAGGGGGEAGAGGGAAAVAAGGVVTTTASGKRIR 293

Query: 483 R 485
           +
Sbjct: 294 K 294

>gb|AAN03800.1|AF489858_1 serum amyloid A activating factor 2 [Homo sapiens]
          Length = 493

 Score = 47.0 bits (110), Expect(2) = 1e-05
 Identities = 37/114 (32%), Positives = 48/114 (41%), Gaps = 25/114 (21%)
 Frame = +1

Query: 37  SGPSPSPTP*APTALPLHVPALPVVVAAQ------PVLVMQAVATRAAMPANSCSS---- 186
           + P+P PTP AP A PL V  LPV+ AAQ            A A  AA PA + +S    
Sbjct: 65  AAPAPPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDT 124

Query: 187 ---------------CSSNIKSNTRSNRSLEVAAAPATATTKPTTPVSVTPLPS 303
                           S+          +  +AAA ATA   PT+ V+V P+ S
Sbjct: 125 AALKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAATAVVAPTSTVAVAPVAS 178

 Score = 31.2 bits (69), Expect = 9.0
 Identities = 29/88 (32%), Positives = 36/88 (39%), Gaps = 1/88 (1%)
 Frame = +1

Query: 241 AAPATATTKPTTPVSVTPLPSTAAGCRSCHVPSLPAQRQDT-SASNSAPA*LSLLGATLP 417
           A P T       P+ V  LP  AA   S    +  A      +A+  APA  S +  T  
Sbjct: 68  APPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVD-TAA 126

Query: 418 LRQPRRHAVVPPPLLPTAAAAAVSGSRA 501
           L+QP      PPP+   AA AA   S A
Sbjct: 127 LKQPPAPPPPPPPVSAPAAEAAPPASAA 154

 Score = 23.5 bits (49), Expect(2) = 1e-05
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
 Frame = +3

Query: 306 SGRMPELPRSKPSSPATRHVSEQQCPGLAVLVGR-NAAAAAAAPPCGGATTAVADGGSCR 482
           +GR+P      P+      +S  Q  G     G   A   AAA   GG  T  A G   R
Sbjct: 217 AGRVPSGAMKMPTMVPLSLLSVPQLSGAGGGGGEAGAGGGAAAVAAGGVVTTTASGKRIR 276

Query: 483 R 485
           +
Sbjct: 277 K 277

>sp|P56270|MAZ_HUMAN Myc-associated zinc finger protein (MAZI) (Purine-binding
           transcription factor) (Pur-1) (ZF87) (ZIF87)
           gi|3582443|dbj|BAA33064.1| Myc-associated zinc finger
           protein [Homo sapiens]
          Length = 477

 Score = 47.0 bits (110), Expect(2) = 1e-05
 Identities = 37/114 (32%), Positives = 48/114 (41%), Gaps = 25/114 (21%)
 Frame = +1

Query: 37  SGPSPSPTP*APTALPLHVPALPVVVAAQP------VLVMQAVATRAAMPANSCSSC--- 189
           + P+P PTP AP A PL V  LPV+ AAQ            A A  AA PA + +S    
Sbjct: 65  AAPAPPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVDT 124

Query: 190 ----------------SSNIKSNTRSNRSLEVAAAPATATTKPTTPVSVTPLPS 303
                           S+          +  +AAA ATA   PT+ V+V P+ S
Sbjct: 125 AALKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAATAVVAPTSTVAVAPVAS 178

 Score = 31.2 bits (69), Expect = 9.0
 Identities = 29/88 (32%), Positives = 36/88 (39%), Gaps = 1/88 (1%)
 Frame = +1

Query: 241 AAPATATTKPTTPVSVTPLPSTAAGCRSCHVPSLPAQRQDT-SASNSAPA*LSLLGATLP 417
           A P T       P+ V  LP  AA   S    +  A      +A+  APA  S +  T  
Sbjct: 68  APPPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAAAAVAAAPPAPAAASTVD-TAA 126

Query: 418 LRQPRRHAVVPPPLLPTAAAAAVSGSRA 501
           L+QP      PPP+   AA AA   S A
Sbjct: 127 LKQPPAPPPPPPPVSAPAAEAAPPASAA 154

 Score = 23.5 bits (49), Expect(2) = 1e-05
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
 Frame = +3

Query: 306 SGRMPELPRSKPSSPATRHVSEQQCPGLAVLVGR-NAAAAAAAPPCGGATTAVADGGSCR 482
           +GR+P      P+      +S  Q  G     G   A   AAA   GG  T  A G   R
Sbjct: 217 AGRVPSGAMKMPTMVPLSLLSVPQLSGAGGGGGEAGAGGGAAAVAAGGVVTTTASGKRIR 276

Query: 483 R 485
           +
Sbjct: 277 K 277

>ref|NP_871704.1| putative protein, with a coiled coil-4 domain (3E45) [Caenorhabditis
            elegans] gi|25395679|pir||C88402 protein H05C05.1
            [imported] - Caenorhabditis elegans
            gi|13559630|gb|AAK29840.1| Hypothetical protein H05C05.1a
            [Caenorhabditis elegans]
          Length = 828

 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
 Frame = +3

Query: 69   SNSSAVARSRTAGGGGG---PTSARDASGGHEGG----HAGKQLQQLQQQHQEQHPQQPV 227
            S+ SA + S   GGGGG   P+S+R ++ G  GG     +G    + QQQHQ    ++P 
Sbjct: 642  SSMSAGSESGGRGGGGGGQKPSSSRGSARGMRGGGGHRKSGGDDDRQQQQHQNSIAEKPE 701

Query: 228  IGSGGSTSNSHDQTDNTSVCDPSPEHSGRMPELPRSKPSSPA--TRHVSEQQCPGLAVLV 401
              S GS +    + +  S  D + +     P    S PSS +  T  ++++     A   
Sbjct: 702  GSSSGSATEKSKEIEAKSKKDDTKK--PLEPSAASSDPSSSSTTTTTITKEPPTQSASAS 759

Query: 402  GRNAAAAAAAPPCGGATTAVADG 470
            G  AAAAA+A P   ++   A G
Sbjct: 760  GAAAAAAASAQPSESSSATAASG 782



EST assemble image


clone accession position
1 LC004h12_r AV619191 1 489
2 HCL027g10_r AV641102 26 537




Chlamydomonas reinhardtii
Kazusa DNA Research Institute