KCC002393A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002393A_C01 KCC002393A_c01
tcaAACTAACCAATTTTAATTTTATGCTTCTGCCACACGCACGACGAATGACATCTTTTC
CTGCAGTCAAGTAGCGAACTCGAGCGAGCAGAACGTTTTATTGTGATTCGCTTGACAAAA
TATATTGAGCTTAGCGGAGACCTCAGGCGGTGGGTCTTCCATTTCCAGGACCAGTCTCCA
GGGTAGCGTGAATGGCATTTGCTATCAAAGATGTGATAGTCAAGAGAGCGCAACAGCAGC
TGCCGGGAGAGTCAGGGTTGCTGCAAGTGGCCGTCGATGGCCTTGCGTCGCTGGCGTCCG
CTGCAAGTTCGGAGGGGACCGACGGCGCCCAGGATGCTGTTTGCAAGGTCGACGCAGCAG
ATTCGGCGCTTTCCGCCCAGCTCCAAGCGTGGAGCTCCTGGACTTCGGACGCGCTCGCCA
CCGGGCAACAGGGCGTGCAGCAGCCTCAGTACGCCGCCCTGGCCAACGCTCTGGCCCAGG
CGGTGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002393A_C01 KCC002393A_c01
         (487 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_285591.1| adenine deaminase-related protein [Deinococcus ...    40  0.019
gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]         39  0.043
gb|AAF44055.1| hypothetical protein [Shuttle vector pI3]               39  0.043
ref|XP_351559.1| similar to CG9996-PA [Homo sapiens]                   38  0.074
gb|AAD46470.1|AF108009_1 HV1PST [Hordeum vulgare]                      37  0.096

>ref|NP_285591.1| adenine deaminase-related protein [Deinococcus radiodurans]
           gi|7471084|pir||C75580 adenine deaminase-related protein
           - Deinococcus radiodurans  (strain R1)
           gi|6460671|gb|AAF12376.1|AE001863_1 adenine
           deaminase-related protein [Deinococcus radiodurans]
          Length = 376

 Score = 39.7 bits (91), Expect = 0.019
 Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = -2

Query: 459 GRRTEAAAR---PVARWRARPKSRSSTLGAG--RKAPNLLRRPCKQHPGRRRS-PPNLQR 298
           GRR  AA R   P ARWR RP++R   LG G  R A  L   P    P R R+     +R
Sbjct: 145 GRRGSAARRRDAPPARWRRRPRAR---LGRGHLRSARALAHAPDVSRPDRHRACGAGQRR 201

Query: 297 TPATQGHRRPLAA 259
            PA  G RRPL A
Sbjct: 202 RPA--GRRRPLRA 212

>gb|EAA39492.1| GLP_26_54603_52153 [Giardia lamblia ATCC 50803]
          Length = 816

 Score = 38.5 bits (88), Expect = 0.043
 Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = -2

Query: 477 GPERWPGRRTEAAA----RPVARWRARPKSRSSTLGAGRKAPNLL-RRPCKQHPGRRRSP 313
           GP R  G R  + A    RPV R R RP +R   +G G     L   RP ++ PGR    
Sbjct: 62  GPARGRGLRAASGALRGVRPVLRPRGRPVARPGRVGRGGGLGRLRDGRPRQRAPGRALGA 121

Query: 312 PNLQRTPATQGHRRPL 265
           P  +R PA  G R P+
Sbjct: 122 PGRRRPPA--GRRAPV 135

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 25/72 (34%), Positives = 29/72 (39%), Gaps = 7/72 (9%)
 Frame = -2

Query: 486 PPPGPERWPGRRTEAAARPVARWRARPKSRSSTLGAGRKAPNLLRR-------PCKQHPG 328
           PPPG  R P R       P    R RP+ R+    A R AP+  RR       P +   G
Sbjct: 303 PPPG-RRGPPRGDARRGPPPRPRRPRPRRRAPLRSARRGAPDARRRRRRVCRGPPRGRGG 361

Query: 327 RRRSPPNLQRTP 292
             R P  L R P
Sbjct: 362 APRGPARLPRAP 373

>gb|AAF44055.1| hypothetical protein [Shuttle vector pI3]
          Length = 153

 Score = 38.5 bits (88), Expect = 0.043
 Identities = 34/89 (38%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = -2

Query: 486 PPPGP-ERWPGRRTEAAARPVARWRARPKSRSSTLGAGRKAPNLLRRPCKQHPGRRRSPP 310
           PPP P    PGR   A   P   W +R      +L     AP    RP +  PGR   PP
Sbjct: 75  PPPSPCFPRPGRSAPARRWPCG-WPSRAACPCFSL-----AP---LRPPRPAPGR---PP 122

Query: 309 NLQRTPATQGHRRPLAATLTLPAAAVALS 223
            LQ  PA  G RRP  A  + PA +  LS
Sbjct: 123 PLQAFPAGSGRRRPCPACSSFPAPSARLS 151

>ref|XP_351559.1| similar to CG9996-PA [Homo sapiens]
          Length = 443

 Score = 37.7 bits (86), Expect = 0.074
 Identities = 31/90 (34%), Positives = 37/90 (40%), Gaps = 2/90 (2%)
 Frame = -2

Query: 486 PPPGPERWPGRRTEAAARPVARWR--ARPKSRSSTLGAGRKAPNLLRRPCKQHPGRRRSP 313
           P P P RWPG      A P  R R   RP+ R+   GA R    L RRP +    +   P
Sbjct: 47  PAPVPARWPGPGALPGASPGVRRRRPPRPRPRAGRRGAAR-LEKLARRPGEPRSFQAVLP 105

Query: 312 PNLQRTPATQGHRRPLAATLTLPAAAVALS 223
           P L    A       L  TL +  +AV  S
Sbjct: 106 PELWIHLAVVACGNRLEETLVMLKSAVLFS 135

>gb|AAD46470.1|AF108009_1 HV1PST [Hordeum vulgare]
          Length = 206

 Score = 37.4 bits (85), Expect = 0.096
 Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = -2

Query: 450 TEAAARPVARWRAR-PKSRSSTLGAGRKAPNLLRRPCK--QHPGRRRSPPNLQRTPATQG 280
           T AA  P    RA  P SRSS  G GR +P+  RRPC+  +    RRS  +  RT AT+ 
Sbjct: 76  TSAAVTPSGTARATTPSSRSSARGGGRLSPSPRRRPCRFPRSSTYRRSRSSSTRT-ATRR 134

Query: 279 H----RRP 268
           H    RRP
Sbjct: 135 HVGAARRP 142



EST assemble image


clone accession position
1 HCL027e01_r AV641083 1 487
2 MXL052e11_r BP096093 4 400




Chlamydomonas reinhardtii
Kazusa DNA Research Institute