Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002386A_C01 KCC002386A_c01
(816 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64787.1| P0701D05.1 [Oryza sativa (japonica cultivar-grou... 51 2e-05
sp|Q27294|CAZ_DROME RNA-binding protein cabeza (Sarcoma-associat... 50 4e-05
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus] 50 6e-05
gb|AAA70425.1| unknown protein 50 6e-05
ref|XP_237035.2| similar to pigpen [Rattus norvegicus] 49 7e-05
>dbj|BAB64787.1| P0701D05.1 [Oryza sativa (japonica cultivar-group)]
gi|21327989|dbj|BAC00578.1| B1189A09.32 [Oryza sativa
(japonica cultivar-group)]
Length = 535
Score = 51.2 bits (121), Expect = 2e-05
Identities = 26/62 (41%), Positives = 31/62 (49%), Gaps = 6/62 (9%)
Frame = +1
Query: 553 GGAAACPGGGGTGGGGG----WGGAATAAADDNWMC--GTCRCLNLAHRDECGSCGRANP 714
GG GGGG GGGGG GG D +W+C +C +N A R EC CG +P
Sbjct: 95 GGGYGGGGGGGRGGGGGGGGRGGGGRGGGRDGDWVCPDPSCGNVNFARRTECNKCGAPSP 154
Query: 715 RG 720
G
Sbjct: 155 AG 156
Score = 33.9 bits (76), Expect = 3.2
Identities = 15/27 (55%), Positives = 16/27 (58%)
Frame = +1
Query: 550 PGGAAACPGGGGTGGGGGWGGAATAAA 630
PG GGGG GGGGG GG T +A
Sbjct: 350 PGAPPPYHGGGGGGGGGGGGGGYTGSA 376
Score = 32.3 bits (72), Expect = 9.5
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = +1
Query: 553 GGAAACP----GGGGTGGGGGWGGAATAAADD 636
GG A P GGGG GGGGG GG +AA +
Sbjct: 348 GGPGAPPPYHGGGGGGGGGGGGGGYTGSAAPE 379
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza (Sarcoma-associated RNA-binding fly
homolog) (P19) gi|1079136|pir||S54729 RNA-binding
protein cabeza - fruit fly (Drosophila melanogaster)
gi|532788|gb|AAA86955.1| RNA binding protein
gi|567106|gb|AAC41563.1| RNA binding protein
Length = 404
Score = 50.1 bits (118), Expect = 4e-05
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +1
Query: 544 RAPGGAAACPGGGGT-----GGGGGWGGAATAAADDNWMCGTCRCLNLAHRDECGSCGRA 708
R GG GGGG GGGGG GG D +W C +C N A R+EC C
Sbjct: 247 RGGGGGGNGGGGGGRYDRGGGGGGGGGGGNVQPRDGDWKCNSCNNTNFAWRNECNRC--K 304
Query: 709 NPRG 720
P+G
Sbjct: 305 TPKG 308
Score = 34.3 bits (77), Expect = 2.5
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = +1
Query: 469 CNSADPEQVRLLNEANRAAAIAQASRAPGGAAACPGGGGTGGGGGWGG 612
CNS + NE NR G GGGG GGGGG GG
Sbjct: 286 CNSCNNTNFAWRNECNRCKTPKGDDEGSSGGG---GGGGYGGGGGGGG 330
>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
Length = 2607
Score = 49.7 bits (117), Expect = 6e-05
Identities = 55/154 (35%), Positives = 68/154 (43%), Gaps = 6/154 (3%)
Frame = -3
Query: 733 RSAGGRAGWPARRSRTRRGAPGSGSGRCHTSSCRQQQQ*QHRPSRRPR-RCHRRPGMLLR 557
RS + G R+ T+RG S S + S Q+ P RR R R +RPG
Sbjct: 387 RSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRS 446
Query: 556 RRA-RGWPARSRLRGWPHSAAAPAPGPRCCRGRTAPRTGGRRGTSRPCPP*RCSSREGSP 380
R R +RS RG HS +PA RGR+ RT RRG SR P R SR +P
Sbjct: 447 RNTQRRGRSRSARRGRSHS-RSPA-----TRGRSRSRTPARRGRSRSRTPARRRSRSRTP 500
Query: 379 ---RSRSKLCDHTDAVQLR-PARHLCR*SIPPRQ 290
RSRS+ + R PAR R P R+
Sbjct: 501 ARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRR 534
Score = 47.0 bits (110), Expect = 4e-04
Identities = 45/130 (34%), Positives = 56/130 (42%), Gaps = 4/130 (3%)
Frame = -3
Query: 742 P*WRSAGGRAGWPARRSRTRRGAPGSGSGRCHTSSCRQQQQ*QHRPSRRPRRCHRRPGML 563
P WR + W RS RRG S + S Q++ + R +RR R R P
Sbjct: 412 PQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATR 471
Query: 562 LRRRARGWPARSRLRG-WPHSAAAPAPGPRCCRGRTAPRTGGRRGTSRPCPP*RCSSREG 386
R R+R R R R P + + P R R+ RT RRG SR P R SR
Sbjct: 472 GRSRSRTPARRGRSRSRTPARRRSRSRTP--ARRRSRSRTPARRGRSRSRTPARRRSRTR 529
Query: 385 SP---RSRSK 365
SP RSRS+
Sbjct: 530 SPVRRRSRSR 539
Score = 42.7 bits (99), Expect = 0.007
Identities = 38/112 (33%), Positives = 46/112 (40%), Gaps = 1/112 (0%)
Frame = -3
Query: 700 RRSRTRRGAPGSGSGRCHTSSCRQQQQ*QHRPSRRPRRCHRRPG-MLLRRRARGWPARSR 524
RRSR+R A SG R T + R + P+RR R R P R R+R R R
Sbjct: 534 RRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRGR 593
Query: 523 LRGWPHSAAAPAPGPRCCRGRTAPRTGGRRGTSRPCPP*RCSSREGSPRSRS 368
R + RGR+ RT RRG S + SR RSRS
Sbjct: 594 SRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRS 645
Score = 37.4 bits (85), Expect = 0.29
Identities = 42/126 (33%), Positives = 52/126 (40%), Gaps = 14/126 (11%)
Frame = -3
Query: 700 RRSRTRRGAPGSGSGRCHTSSCRQQQQ*QHRPSRRPRRCHRRPGMLLRRRARGWPA---R 530
RRSR+R R T +++ P+RR R P R R+R P R
Sbjct: 1766 RRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRRR 1825
Query: 529 SRLRGWP------HSAAAPAPGPRCCRGRTAPRTGGRRGTSRPCPP*RCSSREGSP---- 380
SR R P S +P R R RT+P T RR SR P R SR +P
Sbjct: 1826 SRSRTSPVTRRRSRSRTSPVTRRR-SRSRTSPVT-RRRSRSRTSPVTRRRSRSRTPPAIR 1883
Query: 379 -RSRSK 365
RSRS+
Sbjct: 1884 RRSRSR 1889
Score = 36.2 bits (82), Expect = 0.65
Identities = 38/112 (33%), Positives = 46/112 (40%)
Frame = -3
Query: 718 RAGWPARRSRTRRGAPGSGSGRCHTSSCRQQQQ*QHRPSRRPRRCHRRPGMLLRRRARGW 539
R+ PARR R+R P R S R++ + + + R R R P R
Sbjct: 506 RSRTPARRGRSRSRTPARRRSRTR-SPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRT 564
Query: 538 PARSRLRGWPHSAAAPAPGPRCCRGRTAPRTGGRRGTSRPCPP*RCSSREGS 383
PAR RG S P R R R+ RT RRG SR P R SR S
Sbjct: 565 PAR---RGRSRSRT---PARRSARSRS--RTPARRGRSRSRTPARRRSRSRS 608
Score = 33.5 bits (75), Expect = 4.2
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 27/149 (18%)
Frame = -3
Query: 733 RSAGGRAGWPARRSRTRRGAPGS---------GSGRCHT--------SSCRQQQQ*QHRP 605
RSA R+ PARR R+R P GR H+ S +++ + R
Sbjct: 579 RSARSRSRTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRT 638
Query: 604 SRRPRRCHRRPGM----LLRRRARGWPA-RSRLRGWPHSAAAPAPGPRCCRGRTAPRTGG 440
S+R R + P M + RR+R + RS+ + S + +P P+ + P
Sbjct: 639 SQRRSRSNSSPEMKKSHVSSRRSRSLSSPRSKAKSLRRSLSGSSPCPK--QKSQTPTRRS 696
Query: 439 RRGTSRP-----CPP*RCSSREGSPRSRS 368
R G+S P PP + S P+ +S
Sbjct: 697 RSGSSPPKQKSKTPPRQSRSNSPQPKVKS 725
>gb|AAA70425.1| unknown protein
Length = 365
Score = 49.7 bits (117), Expect = 6e-05
Identities = 26/64 (40%), Positives = 29/64 (44%), Gaps = 5/64 (7%)
Frame = +1
Query: 544 RAPGGAAACPGGGGT-----GGGGGWGGAATAAADDNWMCGTCRCLNLAHRDECGSCGRA 708
R GG GGGG GGGGG GG D W C +C N A R+EC C
Sbjct: 209 RGGGGGGNGGGGGGRYDRGGGGGGGGGGGNVQPRDGEWKCNSCNNTNFAWRNECNRC--K 266
Query: 709 NPRG 720
P+G
Sbjct: 267 TPKG 270
Score = 34.3 bits (77), Expect = 2.5
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = +1
Query: 469 CNSADPEQVRLLNEANRAAAIAQASRAPGGAAACPGGGGTGGGGGWGG 612
CNS + NE NR G GGGG GGGGG GG
Sbjct: 248 CNSCNNTNFAWRNECNRCKTPKGDDEGSSGGG---GGGGYGGGGGGGG 292
>ref|XP_237035.2| similar to pigpen [Rattus norvegicus]
Length = 323
Score = 49.3 bits (116), Expect = 7e-05
Identities = 34/98 (34%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Frame = +1
Query: 475 SADPEQVRLLNEA---NRAAAIAQASRAPGGAAACPG-------GGGTGG---GGGWGGA 615
S +P +V ++ NR R GG C G GGG GG GGG GG
Sbjct: 166 SGNPIKVSFATQSADFNRGGRSGCGGRGRGGPMGCGGYGGGGSSGGGRGGFPSGGGGGGG 225
Query: 616 ATAAADDNWMC--GTCRCLNLAHRDECGSCGRANPRGP 723
A D W C TC +N + R+EC C P GP
Sbjct: 226 QQRAGD--WKCPNPTCENMNFSWRNECNQCKAPKPDGP 261
