KCC002384A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002384A_C01 KCC002384A_c01
ccggcgaaatattGTAACGCAACATGTCTGCAACAGCAGAGCTGCACAGACGCTCAACTT
TGCGGGAGCATAAGGCCGGCAACGAAGACCCAACGAAGACCCTGACACTCAGCAATGACC
ATAGCGATGATTTTCAAGATAAGTATCGTCGTCAACACACGGCTGGTCTTCTAGCAGAAC
TCCTGGATGAATACCGAGCGGCTCACCAGCCCAAAGGAGAACCGGCGCCCAAGCCGAAAC
CGACAGGCATTAAGCCACGAGGCTGCATCCTGCCCGTGCTGGTTGTGCTGCTGCTCACGA
TTCCGCTGGTCGGGCTGTGCCTTCCTATCTTCATAGTGGGCGCCAGGCAAAGCGACGAGG
AGCAGCTCGATTTCATTTGCCTGCTGTACCCCCTCAACCGCCTAGCCTCCAGTTCCAGTG
CCGCCTCCGCCCTGCTGAGGAGCCTCAACGCCACCTACGTAAACTCACCGGTGCTGCAGG
CATGGGTCGCATGGGCCGCGGCTGAGGAGGCGCTGCTTCAGGACGCCGACAATACCACCG
C


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002384A_C01 KCC002384A_c01
         (541 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_079162.1| hypothetical protein FLJ14280 [Homo sapiens] gi...    40  0.015
gb|AAO39569.1| LP02021p [Drosophila melanogaster]                      39  0.057
ref|NP_610480.2| CG13739-PA [Drosophila melanogaster] gi|2164553...    38  0.098
gb|AAL99925.1|AF432219_1 CLL-associated antigen KW-6 [Homo sapiens]    37  0.17
ref|NP_077061.1| Enah/Vasp-like [Rattus norvegicus] gi|25090259|...    36  0.28

>ref|NP_079162.1| hypothetical protein FLJ14280 [Homo sapiens]
           gi|10436705|dbj|BAB14892.1| unnamed protein product
           [Homo sapiens]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 36/119 (30%), Positives = 42/119 (35%), Gaps = 13/119 (10%)
 Frame = +1

Query: 223 RRPSRNRQALSHEAASCPCW--LCCCSRFRWSGCAFLSS*WAPGKATRSSSISFACCTPS 396
           RRP+R         +  P W  LCC  + R +  A       PG   R+S       T S
Sbjct: 53  RRPNRASGRRRRSCSPAPTWPPLCCYPQSRPTASAA-----GPGACMRASGRPHGNTTAS 107

Query: 397 TA*PPVPVP-----------PPPC*GASTPPT*THRCCRHGSHGPRLRRRCFRTPTIPP 540
           TA P  P P           P PC G + PP      CR     PR  RR  R     P
Sbjct: 108 TAPPRHPRPRRPGGPALRPTPRPCAGPAPPPASRDCRCRRPRRWPRAGRRGRRAGACKP 166

>gb|AAO39569.1| LP02021p [Drosophila melanogaster]
          Length = 816

 Score = 38.5 bits (88), Expect = 0.057
 Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +1

Query: 229 PSRNRQALSHEAA-SCPCWL-----CCCSRFRWSGCAFLSS*WAPGKATRSSSISFACCT 390
           P   R  LS  AA SCPC        CCS  R S  +   S   P  ++RSSS S++   
Sbjct: 4   PPLLRHRLSLRAARSCPCHRPPRPPSCCSTRRSSKSS--RSHTCPPSSSRSSSRSWSTLA 61

Query: 391 PSTA*PPVPVPPPP 432
           P+ A  P PV PPP
Sbjct: 62  PTAACHPFPVAPPP 75

>ref|NP_610480.2| CG13739-PA [Drosophila melanogaster] gi|21645531|gb|AAF58952.2|
           CG13739-PA [Drosophila melanogaster]
          Length = 875

 Score = 37.7 bits (86), Expect = 0.098
 Identities = 19/58 (32%), Positives = 28/58 (47%)
 Frame = -3

Query: 449 VEAPQQGGGGTGTGG*AVEGVQQANEIELLLVALPGAHYEDRKAQPDQRNREQQHNQH 276
           +  P Q GGG GTG  AV     A +    L+     H+  ++ Q  Q+ ++QQH  H
Sbjct: 172 ISHPSQRGGGGGTGSGAVSPALSARQQHHHLLQQQQQHHHQQQQQHQQQQQQQQHQLH 229

>gb|AAL99925.1|AF432219_1 CLL-associated antigen KW-6 [Homo sapiens]
          Length = 241

 Score = 37.0 bits (84), Expect = 0.17
 Identities = 33/91 (36%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
 Frame = +2

Query: 260 RLHPARAGCAAAHDSAGRAVPSY----LHSGRQAKRRGAARFHLPAVPPQPPSLQFQC-- 421
           R  PA A          R VP      LH  R+ +R  A R HLP  P +P   Q     
Sbjct: 124 RGEPAAALQGQVGALGARGVPEQQLPRLHGHREQQRGAAQRSHLPDQPHRPARAQRAVAQ 183

Query: 422 ----RLRPAEEPQRHLRKLTGAAGMGRMGRG 502
               RLRPA    R LR+L G A  G+  RG
Sbjct: 184 GGAPRLRPA---ARRLRELAGRAPRGQHQRG 211

>ref|NP_077061.1| Enah/Vasp-like [Rattus norvegicus] gi|25090259|sp|O08719|EVL_RAT
           Ena/vasodilator stimulated phosphoprotein-like protein
           (Ena/VASP-like protein) gi|7514078|pir||JC5614 RNB6
           protein - rat gi|2058462|gb|AAC53322.1| RNB6 [Rattus
           norvegicus]
          Length = 393

 Score = 36.2 bits (82), Expect = 0.28
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +1

Query: 343 PGKATRSSSISFACCTPSTA*PPVPVPPPPC*GASTPP 456
           PG  + ++S +F+C  P    PP PVPPPP    STPP
Sbjct: 164 PGHPSSAASATFSCSGPPPP-PPPPVPPPPT--GSTPP 198



EST assemble image


clone accession position
1 LCL013f09_r AV626685 1 281
2 LCL085f05_r AV630879 14 336
3 HCL026d11_r AV641026 31 541
4 HCL034a06_r AV641458 53 530




Chlamydomonas reinhardtii
Kazusa DNA Research Institute