KCC002377A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002377A_C01 KCC002377A_c01
cGAAATGAGAAGCGGCGCGCTGCGTTTTGATGGGCCCACCAGATGCGTGGCCCCCGCGCG
TTGCCTGCGGCAGCGGGGCTGCCGCTTGACCCGCGTGGCGCGTGCGCCTGCCGCCGCCAG
CGACGTGCAGCTGCGCACATCGCTCATTCCTGAGACTCTAGAGGACATGGAGACGGACAC
TGAGCTCAAGGAGCACCTGGCCGCGCTGGAGGCGTCGGGGCAGCAGGCGCTGACGCGCGA
GGAGCGCCTGAAGCGGCAGCGCAGCCTGGATGCACTAGGGGCGCCCTCCTTCTACGCCAC
GTGCGCGGAGCATGGCGTGGCGCCCCTGAAGCGCTCCGCTGCGCGCATCTTCCAGCTCAA
CATCGGGCTGTACTGCAACCAGGCCTGCAGCCACTGCCACGTGGAGTCGTCGCCCCGCCG
CACCGCGGAGCAGGCCAGCCGCGACACCGTAGACCGCTGCCTGGAGCTGCTGCGGGCGGA
CCGCGCGGCGCCGGACGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002377A_C01 KCC002377A_c01
         (500 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00099605.1| COG0535: Predicted Fe-S oxidoreductases [Desu...    54  1e-06
ref|ZP_00073683.1| COG0535: Predicted Fe-S oxidoreductases [Tric...    52  3e-06
ref|NP_867438.1| conserved hypothetical protein-putative Fe-S ox...    52  5e-06
ref|NP_487137.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...    51  7e-06
ref|ZP_00100292.1| COG0535: Predicted Fe-S oxidoreductases [Desu...    51  9e-06

>ref|ZP_00099605.1| COG0535: Predicted Fe-S oxidoreductases [Desulfitobacterium
           hafniense]
          Length = 327

 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = +2

Query: 278 GAPSFYATCAEHGVAPLKRSAAR--IFQLNIGLYCNQACSHCHVESSPRRTAEQASRDTV 451
           G P+F     + G   L  +A R  + Q+N+G  CN AC HCHVE+ P RT E+ SR+ +
Sbjct: 11  GIPAFET---KFGDQALMDTAERLSVLQINVGKRCNLACKHCHVEAGPNRT-EEMSREVM 66

Query: 452 DRCLELL 472
           + CL LL
Sbjct: 67  EACLRLL 73

>ref|ZP_00073683.1| COG0535: Predicted Fe-S oxidoreductases [Trichodesmium erythraeum
           IMS101]
          Length = 328

 Score = 52.4 bits (124), Expect = 3e-06
 Identities = 22/49 (44%), Positives = 35/49 (70%)
 Frame = +2

Query: 326 LKRSAARIFQLNIGLYCNQACSHCHVESSPRRTAEQASRDTVDRCLELL 472
           L +    + Q+NIG  CN AC+HCHVE+SP+RT E+ S++  ++ +EL+
Sbjct: 17  LTKKKITVLQINIGRRCNLACTHCHVEASPKRT-EELSKEICEQLIELI 64

>ref|NP_867438.1| conserved hypothetical protein-putative Fe-S oxidoreductases
           [Pirellula sp.] gi|32444982|emb|CAD74984.1| conserved
           hypothetical protein-putative Fe-S oxidoreductases
           [Pirellula sp.]
          Length = 332

 Score = 51.6 bits (122), Expect = 5e-06
 Identities = 21/49 (42%), Positives = 30/49 (60%)
 Frame = +2

Query: 326 LKRSAARIFQLNIGLYCNQACSHCHVESSPRRTAEQASRDTVDRCLELL 472
           L+R+     Q+N+G  CNQ C+HCHV++ P +  E     T DR LEL+
Sbjct: 29  LRRNQLNQLQINLGKLCNQTCTHCHVDAGPTKKRENMDDRTADRLLELV 77

>ref|NP_487137.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25381710|pir||AB2193
           hypothetical protein alr3097 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17132191|dbj|BAB74796.1|
           ORF_ID:alr3097~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 335

 Score = 51.2 bits (121), Expect = 7e-06
 Identities = 23/58 (39%), Positives = 34/58 (57%)
 Frame = +2

Query: 320 APLKRSAARIFQLNIGLYCNQACSHCHVESSPRRTAEQASRDTVDRCLELLRADRAAP 493
           +PL +    + Q+N+G  CN AC+HCHVE+SP+RT E     T + C +L+      P
Sbjct: 22  SPLIKQEINVLQINLGKRCNLACTHCHVEASPKRTEEL----TAEICQQLIEVIHRFP 75

>ref|ZP_00100292.1| COG0535: Predicted Fe-S oxidoreductases [Desulfitobacterium
           hafniense]
          Length = 409

 Score = 50.8 bits (120), Expect = 9e-06
 Identities = 29/81 (35%), Positives = 43/81 (52%), Gaps = 1/81 (1%)
 Frame = +2

Query: 182 ELKEHLAALEASGQQALTREERLKRQRSLDALGAPSFYATCAEHGVAPLK-RSAARIFQL 358
           E +  +  L+A+ Q + ++ E      SL+ L    F     E GV PLK + A +  Q+
Sbjct: 67  ERERGVGLLQATAQNSDSQLE------SLNHLNIKPFLERLQESGVLPLKSKEAIQTMQM 120

Query: 359 NIGLYCNQACSHCHVESSPRR 421
           N+G  CN +C HCHVE+ P R
Sbjct: 121 NVGKICNLSCKHCHVEAGPLR 141



EST assemble image


clone accession position
1 HCL025f06_r AV640977 1 414
2 LC053f05_r AV622724 2 500




Chlamydomonas reinhardtii
Kazusa DNA Research Institute