KCC002376A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002376A_C01 KCC002376A_c01
aagggtacatacatgcGCCATTCGTATTCGGAAATGACGGCTTCACGTAGAGTTGGCCCG
TTTTGCGTTTCAACTGCCCTTGTATGCGCGCTCGCGCTGGTAGTATCGCGAGCTTCGGCA
ACACAATCAACACGATCGCTTAAACAATCTACTTCGGCCGTGGGGGTCGCGACGCCTTCG
CCGACCCCATTCACAGCGGGGCCATGCCCCTGCAAAGAAGGCGACGGCTTGGTGTGCGTT
AACAAGACGTGCCAGTGCCGCTCTGGCACCACCTATTGCGGAGCAAACGACGGCTGTGTG
AACCTGTCGAAGGACAATGACATGCATTGCGGAGCCTGTAACAACAAGTGCACAGGTGGC
GCCAAGTGCCGCAACGGCAAGTGCGTCTGCCCCAAGGGCAAGGTGCGGTGCGGCGCGGGA
TGCGTCGCTGTTGCCAGCTTCCAACGCGATGAGCGCAACTGCGGCGGCTGCGGCACAGTG
TGCGGTACCGGACAGACGTGCGACACGGGCATCTGCGTGTGCCCGGATCTCCCTGCGTCG
AGTAACGGGGGCACGCGTCTTCAACAGTTCTGGGACGACGACCTGAAGACGTGCGTTGCC
CTTCGGCCCGGCGAGTGCAAGGGCGGCTTCCTAACCGCCGCCGGTGGTTTCAACCGCTCC
GGGAATGTGCCATACCCGAGCCAACCGCAAAACACGCTGTTTGCATTTCTGACCGCCGCG
TCATACGACTGGTTTTGGGGTCTGTCTCCGAAGACGCCCGACAAGGCTTTCACAGCCTGC
ATGCAGAGGTGGGGCATCGTGGCCCCGCCCGTCGTCAAGAACTACCGGGTGAAGCCGGCG
CAGCAGGGCAGCACGACCCCCGCGGTGACGTACAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002376A_C01 KCC002376A_c01
         (875 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD45584.1|AF130353_1 Stig1 [Petunia x hybrida]                     65  2e-09
gb|AAD45583.1|AF130352_1 Stig1 [Petunia x hybrida]                     65  2e-09
pir||S46368 STIG1 protein - common tobacco gi|496647|emb|CAA5483...    64  3e-09
ref|NP_200322.1| hypothetical protein [Arabidopsis thaliana] gi|...    56  9e-07
pir||T34264 hypothetical protein F46C8.4 - Caenorhabditis elegans      55  1e-06

>gb|AAD45584.1|AF130353_1 Stig1 [Petunia x hybrida]
          Length = 133

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 44/134 (32%), Positives = 60/134 (43%), Gaps = 2/134 (1%)
 Frame = +1

Query: 121 TQSTRSLKQSTSAVGVATPSPTPFTAGPCPCKE--GDGLVCVNKTCQCRSGTTYCGANDG 294
           T +T S   S++ V V+        A P P K+  GD ++C  +TC+  S    C  N  
Sbjct: 21  TYNTNSTTNSSTNVAVSARKG----ADP-PSKQPGGDNMIC--ETCRALSEKLTCCFNAS 73

Query: 295 CVNLSKDNDMHCGACNNKCTGGAKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNCGGCG 474
           CV+LS  N  +CG+C   C    +C             CG  CV +    +D  NCG CG
Sbjct: 74  CVDLSS-NRFNCGSCGIVCDLRTRC-------------CGGLCVDIT---KDNGNCGNCG 116

Query: 475 TVCGTGQTCDTGIC 516
             C  GQ C  G+C
Sbjct: 117 NACAPGQDCSFGLC 130

 Score = 33.9 bits (76), Expect = 3.6
 Identities = 21/61 (34%), Positives = 27/61 (43%), Gaps = 2/61 (3%)
 Frame = +1

Query: 343 NKCTGGAKCRNGKCVCPKGKVRC--GAGCVAVASFQRDERNCGGCGTVCGTGQTCDTGIC 516
           +K  GG       C     K+ C   A CV ++S   +  NCG CG VC     C  G+C
Sbjct: 46  SKQPGGDNMICETCRALSEKLTCCFNASCVDLSS---NRFNCGSCGIVCDLRTRCCGGLC 102

Query: 517 V 519
           V
Sbjct: 103 V 103

>gb|AAD45583.1|AF130352_1 Stig1 [Petunia x hybrida]
          Length = 138

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 44/134 (32%), Positives = 60/134 (43%), Gaps = 2/134 (1%)
 Frame = +1

Query: 121 TQSTRSLKQSTSAVGVATPSPTPFTAGPCPCKE--GDGLVCVNKTCQCRSGTTYCGANDG 294
           T +T S   S++ V V+        A P P K+  GD ++C  +TC+  S    C  N  
Sbjct: 26  TYNTNSTTNSSTNVAVSARKG----ADP-PSKQPGGDNMIC--ETCRALSEKLTCCFNAS 78

Query: 295 CVNLSKDNDMHCGACNNKCTGGAKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNCGGCG 474
           CV+LS  N  +CG+C   C    +C             CG  CV +    +D  NCG CG
Sbjct: 79  CVDLSS-NRFNCGSCGIVCDLRTRC-------------CGGLCVDIT---KDNGNCGNCG 121

Query: 475 TVCGTGQTCDTGIC 516
             C  GQ C  G+C
Sbjct: 122 NACAPGQDCSFGLC 135

 Score = 33.9 bits (76), Expect = 3.6
 Identities = 21/61 (34%), Positives = 27/61 (43%), Gaps = 2/61 (3%)
 Frame = +1

Query: 343 NKCTGGAKCRNGKCVCPKGKVRC--GAGCVAVASFQRDERNCGGCGTVCGTGQTCDTGIC 516
           +K  GG       C     K+ C   A CV ++S   +  NCG CG VC     C  G+C
Sbjct: 51  SKQPGGDNMICETCRALSEKLTCCFNASCVDLSS---NRFNCGSCGIVCDLRTRCCGGLC 107

Query: 517 V 519
           V
Sbjct: 108 V 108

>pir||S46368 STIG1 protein - common tobacco gi|496647|emb|CAA54838.1| STIG1
           [Nicotiana tabacum]
          Length = 146

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 50/161 (31%), Positives = 65/161 (40%), Gaps = 14/161 (8%)
 Frame = +1

Query: 76  ALVCALALVVSRASATQSTRSLKQSTSAVGVATPSPTPFT------AGPCPCKEGD---- 225
           A +  L L++   S+T  T      T+     T S T         A P P K G+    
Sbjct: 2   AFINLLILIILTLSSTPITTMSIPETNRRNATTNSYTDVALSARKGAFPPPRKLGEYSTN 61

Query: 226 ----GLVCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHCGACNNKCTGGAKCRNGKCVCP 393
                L+C  KTC+  S    C  N  CV++S  N  +CG+C   C  G +C        
Sbjct: 62  STDYNLIC--KTCKRLSERNTCCFNYSCVDVST-NRFNCGSCGLVCNLGTRC-------- 110

Query: 394 KGKVRCGAGCVAVASFQRDERNCGGCGTVCGTGQTCDTGIC 516
                CG  CV +   Q+D  NCG C  VC  GQ C  G C
Sbjct: 111 -----CGGICVDI---QKDNGNCGKCSNVCSPGQKCSFGFC 143

 Score = 36.6 bits (83), Expect = 0.56
 Identities = 21/71 (29%), Positives = 24/71 (33%)
 Frame = +1

Query: 307 SKDNDMHCGACNNKCTGGAKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNCGGCGTVCG 486
           S D ++ C  C         C N  CV                    +  NCG CG VC 
Sbjct: 62  STDYNLICKTCKRLSERNTCCFNYSCV----------------DVSTNRFNCGSCGLVCN 105

Query: 487 TGQTCDTGICV 519
            G  C  GICV
Sbjct: 106 LGTRCCGGICV 116

>ref|NP_200322.1| hypothetical protein [Arabidopsis thaliana]
           gi|9758108|dbj|BAB08580.1| gene_id:MCO15.6~unknown
           protein [Arabidopsis thaliana]
          Length = 163

 Score = 55.8 bits (133), Expect = 9e-07
 Identities = 30/98 (30%), Positives = 42/98 (42%)
 Frame = +1

Query: 223 DGLVCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHCGACNNKCTGGAKCRNGKCVCPKGK 402
           D  +C +      +  T    N+ C++LS D D +CG C NKC  G  C  G+CV     
Sbjct: 80  DNEICSSSDYSTGANATMACCNNKCMDLSTD-DKNCGLCKNKCKFGQTCCRGQCV----- 133

Query: 403 VRCGAGCVAVASFQRDERNCGGCGTVCGTGQTCDTGIC 516
                          D+R+CG C   C  G+ C  G+C
Sbjct: 134 -----------YVAYDKRHCGECNHRCDLGEFCVYGLC 160

 Score = 35.8 bits (81), Expect = 0.96
 Identities = 21/67 (31%), Positives = 29/67 (42%), Gaps = 2/67 (2%)
 Frame = +1

Query: 325 HCGACNNKCTGG--AKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNCGGCGTVCGTGQT 498
           HC   N  C+    +   N    C      C   C+ +++   D++NCG C   C  GQT
Sbjct: 76  HCNKDNEICSSSDYSTGANATMAC------CNNKCMDLST---DDKNCGLCKNKCKFGQT 126

Query: 499 CDTGICV 519
           C  G CV
Sbjct: 127 CCRGQCV 133

>pir||T34264 hypothetical protein F46C8.4 - Caenorhabditis elegans
          Length = 2195

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 25/76 (32%), Positives = 36/76 (46%), Gaps = 3/76 (3%)
 Frame = +1

Query: 331  GACNNK---CTGGAKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNCGGCGTVCGTGQTC 501
            GAC +    CTG + C N  C+CP G+      CV++ ++      C    T+C     C
Sbjct: 1524 GACEDGTILCTGNSVCANNVCICPGGETVQNGTCVSINTYSSPGDPCDLTNTICTGNSQC 1583

Query: 502  DTGICVCPDLPASSNG 549
              GIC CP+   + NG
Sbjct: 1584 IDGICKCPNNQGAING 1599

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 36/140 (25%), Positives = 53/140 (37%), Gaps = 32/140 (22%)
 Frame = +1

Query: 199  GPCPCKEGDGLVCVNKTCQCRSG----TTYCGAN-----------------DGCVNLSKD 315
            G C  + G+  VC+   CQCR+G    T  C A+                 +GC   ++ 
Sbjct: 1746 GNCQRQCGNNQVCIQDQCQCRNGYYAQTETCVADKCNCVQRAVAIPSPCVGNGCAPSAQS 1805

Query: 316  ND---------MHCGACNN--KCTGGAKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNC 462
                         C    N   C   A+C N  C+CP  +V  G+ CV         ++C
Sbjct: 1806 QSYLQFIGLPGKMCDLRPNAIPCRNDAQCVNNYCICPSNRVISGSNCVFYLGDALPGQSC 1865

Query: 463  GGCGTVCGTGQTCDTGICVC 522
               G +C  G +C+  IC C
Sbjct: 1866 QNNGMICRGGSSCNQNICQC 1885

 Score = 52.8 bits (125), Expect = 8e-06
 Identities = 32/109 (29%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
 Frame = +1

Query: 211  CKEGDGL-----VCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHCGACNNKCTGGAKCRN 375
            C++G  L     VC N  C C  G T        +N        C   N  CTG ++C +
Sbjct: 1526 CEDGTILCTGNSVCANNVCICPGGETVQNGTCVSINTYSSPGDPCDLTNTICTGNSQCID 1585

Query: 376  GKCVCPKGKVRCGAGCVAVASFQRDERNCGGCGTVCGTGQTCDTGICVC 522
            G C CP  +      C  + +      NCG     CGT Q C    C C
Sbjct: 1586 GICKCPNNQGAINGRCSNMGN-----ANCG--NIQCGTNQICIQDSCQC 1627

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 56/195 (28%), Positives = 73/195 (36%), Gaps = 33/195 (16%)
 Frame = +1

Query: 160  VGVATPSPTPFTAGPCPCKEGD---GLVCVNKTCQCRSGTTYCGANDGCVNLS----KDN 318
            +GV     +   AG C C  G      VC+      R GT+ C   + CV+ S    + N
Sbjct: 516  IGVTCDGGSVCVAGICVCPLGKTPRNGVCIEHVA-ARPGTS-CQNEEECVDHSYCSPETN 573

Query: 319  DMHC---------GACNNK--------------CTGGAKCRNGKCVCPKGKVRCGAGCVA 429
               C         G C  +              C G + C NGKC C  GKV     C+ 
Sbjct: 574  KCECMKASQMVIGGECRERLKAHPGYGCTMGEMCVGNSVCVNGKCACVDGKVEINKICID 633

Query: 430  VASFQRDERNCGGCGTVCGTGQTC--DTGICVCPDLPASSNGGTRLQQF-WDDDLKTCVA 600
              S +  +  CG  G +C  G  C  D+G C C     S NG  +   F +  DL T + 
Sbjct: 634  QVSAKPGD-TCGK-GIICEGGSYCNTDSGKCACRRGENSINGICKGFTFVYPGDLCTDIT 691

Query: 601  LRPGECKGGFLTAAG 645
             R   C GG   A G
Sbjct: 692  SR---CTGGSYCARG 703

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 32/97 (32%), Positives = 44/97 (44%)
 Frame = +1

Query: 232  VCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHCGACNNKCTGGAKCRNGKCVCPKGKVRC 411
            VCVN  C+C  G  + G  D CV  S+ +   C A +N+C  GA+C  G+C C  G    
Sbjct: 1215 VCVNGFCRCPEGLVHYG--DKCV--SEIDATKCLA-SNQCPSGAQCVKGECRCKPGLGIT 1269

Query: 412  GAGCVAVASFQRDERNCGGCGTVCGTGQTCDTGICVC 522
              G     +F     +C   G  C     C+ G+C C
Sbjct: 1270 RYGFCVPITFAEPGTSC-AYGEHCQKDSHCEDGLCTC 1305

 Score = 49.3 bits (116), Expect = 8e-05
 Identities = 47/175 (26%), Positives = 58/175 (32%), Gaps = 50/175 (28%)
 Frame = +1

Query: 175 PSPTPFTAGPCPCKEGDGLVCV-NKTCQ----CRSGTTYCGA-----NDGCVNLSKDNDM 324
           PS     AG C  +   G  CV N  C     C+SGT  C       ++ C  +  + + 
Sbjct: 369 PSGIVEVAGRCVKQVSIGQPCVANAQCNFGSFCQSGTCQCPPGFYVQDEQCQAIESEPNE 428

Query: 325 HCGACNNKCTGGAKCRNGKCVCPKGKVRCGAGC----VAVASF----------------Q 444
            C   N KCT G+ C NGKC CP+        C     A  ++                Q
Sbjct: 429 SCQN-NEKCTKGSVCYNGKCSCPRNHELINGHCQQNRAAAHAYNTALENIRKIRLRFASQ 487

Query: 445 RDERN--------------------CGGCGTVCGTGQTCDTGICVCPDLPASSNG 549
              RN                    C   G  C  G  C  GICVCP      NG
Sbjct: 488 SKSRNSSPQLTDVENDNDTVPIGSACVRIGVTCDGGSVCVAGICVCPLGKTPRNG 542

 Score = 49.3 bits (116), Expect = 8e-05
 Identities = 32/112 (28%), Positives = 38/112 (33%), Gaps = 11/112 (9%)
 Frame = +1

Query: 220  GDGLVCVNKTCQCRSGTTYCGA---NDGCVNLSKDNDMHCGACNNKCTGGAKCRNGKCVC 390
            G   VC+   CQCRSG         +D C  +    D   G C N+C     C   +C+C
Sbjct: 1660 GMNQVCIQDQCQCRSGYLVLQETCISDRCNCVQPSVDAISGGCMNQCGNNQVCIQDQCLC 1719

Query: 391  PKGKVRCGAGCVAVASFQRDERNC--------GGCGTVCGTGQTCDTGICVC 522
              G       C        D  NC        G C   CG  Q C    C C
Sbjct: 1720 RNGYYAQPETCTG------DRCNCVQHVVPDMGNCQRQCGNNQVCIQDQCQC 1765

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 29/104 (27%), Positives = 43/104 (40%), Gaps = 6/104 (5%)
 Frame = +1

Query: 235  CVNKTCQCRSGTTYCGANDGCV---NLSKDNDMHCGACNNK-CTGGAKCRNGKCVCPKGK 402
            C+   C+C S   +  ++  CV   ++     +   +C    C GG+ C N  C CP   
Sbjct: 1360 CLKNVCKCASN--FVQSSFSCVPRMSVISSLALPGESCRKGFCVGGSTCENFMCKCPDDY 1417

Query: 403  VRCGAGCVAVASFQRDERNCGGCGTV--CGTGQTCDTGICVCPD 528
             + G  CV     + + R    CGT   C  G TC +  C C D
Sbjct: 1418 FKKGDSCV-----RYESRIGAACGTASGCSGGATCTSSFCQCQD 1456

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 34/127 (26%), Positives = 45/127 (34%), Gaps = 27/127 (21%)
 Frame = +1

Query: 226 GLVCVNKTCQCRSGTTYCG--ANDGCVNLSKDNDMH-------------CGAC------- 339
           GLVC   TC+C +G  + G   + GC    +  D                G C       
Sbjct: 327 GLVCDKNTCRCPNGLVFDGLKCSHGCPPHKRVIDKEICVEGCPSGIVEVAGRCVKQVSIG 386

Query: 340 -----NNKCTGGAKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNCGGCGTVCGTGQTCD 504
                N +C  G+ C++G C CP G       C A+ S      +C      C  G  C 
Sbjct: 387 QPCVANAQCNFGSFCQSGTCQCPPGFYVQDEQCQAIES--EPNESCQN-NEKCTKGSVCY 443

Query: 505 TGICVCP 525
            G C CP
Sbjct: 444 NGKCSCP 450

 Score = 43.1 bits (100), Expect = 0.006
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
 Frame = +1

Query: 226  GLVCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHCGACNNKCTGGAKCRNGKCVCPKGKV 405
            G +C++K C CR+        +G   L+      C    + C+ GA+CRNG CVC K   
Sbjct: 2044 GSICIDKRCACRNDHEMI---NGVCQLANLPGSRCHT--SFCSKGAECRNGYCVCAKTNY 2098

Query: 406  RCGA-GCVAVASFQRDERNCGG----CGTVCGTGQTCDTGICVCP 525
                  CV+  +  +      G      T C    +C  G CV P
Sbjct: 2099 SDSTLDCVSSINANQGSMAYPGSKCNATTSCQQNSSCFFGYCVTP 2143

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 27/109 (24%), Positives = 43/109 (38%)
 Frame = +1

Query: 196 AGPCPCKEGDGLVCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHCGACNNKCTGGAKCRN 375
           +G C C+ G+    +N  C+   G T+    D C +++           ++CTGG+ C  
Sbjct: 659 SGKCACRRGEN--SINGICK---GFTFVYPGDLCTDIT-----------SRCTGGSYCAR 702

Query: 376 GKCVCPKGKVRCGAGCVAVASFQRDERNCGGCGTVCGTGQTCDTGICVC 522
           G+C CP         CV   +    E  C      C     C+  +C C
Sbjct: 703 GRCECPPRMSAIDKKCVHQQTAAPGE-PCSE-KVACSPFSVCENNVCKC 749

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 52/224 (23%), Positives = 75/224 (33%), Gaps = 26/224 (11%)
 Frame = +1

Query: 49   RVGPFCVSTALVCALALVVSRASATQSTR---SLKQSTSAVGV----ATPSPT--PFTA- 198
            R G  C      CA+   V     T +     ++   T+A+ V      P  T  P  A 
Sbjct: 1873 RGGSSCNQNICQCAVGFSVDNGRCTPTIEVRFTMLPVTTAIPVFIIELNPGQTCDPSCAY 1932

Query: 199  GPCPCKEGDGLVCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHC--------GACNNK-- 348
             PC  +   G  C N  C C  G+     N+ C      ND +          +C+N   
Sbjct: 1933 QPCMQRCSGGSSCSNSICSCPQGSGVL--NNVCSPSFPQNDNYNLTRTARPGDSCDNTIV 1990

Query: 349  CTGGAKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNCGGCGTVCGTGQTCDTGI----- 513
            C GG+ C  G C+C  G          V + + + R+     T C     C  G      
Sbjct: 1991 CIGGSSCLIGTCLCDSGYEPSSDRSSCVLNDRYNVRSRSYPKTFCTFDSECTGGSICIDK 2050

Query: 514  -CVCPDLPASSNGGTRLQQFWDDDLKTCVALRPGECKGGFLTAA 642
             C C +     NG  +L         T    +  EC+ G+   A
Sbjct: 2051 RCACRNDHEMINGVCQLANLPGSRCHTSFCSKGAECRNGYCVCA 2094

 Score = 40.4 bits (93), Expect = 0.039
 Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +1

Query: 304  LSKDNDMHCGACNNK--CTGGAKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNCGGCGT 477
            LSK   M    C+NK  CT  + C NG C CP+G V  G  CV+    + D   C     
Sbjct: 1197 LSKPGHM----CDNKTHCTNCSVCVNGFCRCPEGLVHYGDKCVS----EIDATKC-LASN 1247

Query: 478  VCGTGQTCDTGICVC 522
             C +G  C  G C C
Sbjct: 1248 QCPSGAQCVKGECRC 1262

 Score = 39.7 bits (91), Expect = 0.066
 Identities = 42/173 (24%), Positives = 56/173 (32%), Gaps = 26/173 (15%)
 Frame = +1

Query: 208  PCKEGDGLVCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHCGACNNK---CTGGAKCRNG 378
            PC+  +   CVN  C C S     G+N  CV    D  +   +C N    C GG+ C   
Sbjct: 1827 PCR--NDAQCVNNYCICPSNRVISGSN--CVFYLGDA-LPGQSCQNNGMICRGGSSCNQN 1881

Query: 379  KCVCPKGKVRCGAGC--------------VAVASF-------QRDERNCG--GCGTVCGT 489
             C C  G       C               A+  F       Q  + +C    C   C  
Sbjct: 1882 ICQCAVGFSVDNGRCTPTIEVRFTMLPVTTAIPVFIIELNPGQTCDPSCAYQPCMQRCSG 1941

Query: 490  GQTCDTGICVCPDLPASSNGGTRLQQFWDDDLKTCVALRPGECKGGFLTAAGG 648
            G +C   IC CP      N         +D+       RPG+     +   GG
Sbjct: 1942 GSSCSNSICSCPQGSGVLNNVCSPSFPQNDNYNLTRTARPGDSCDNTIVCIGG 1994

 Score = 37.7 bits (86), Expect = 0.25
 Identities = 36/147 (24%), Positives = 44/147 (29%), Gaps = 5/147 (3%)
 Frame = +1

Query: 220  GDGLVCVNKTC----QCRSGTTYCGANDGCVNLSKDNDMHCGACNNKCTGGAKCRNGKCV 387
            GD     N  C    QC  G   C  N G +N    N  +    N +C     C    C 
Sbjct: 1567 GDPCDLTNTICTGNSQCIDGICKCPNNQGAINGRCSNMGNANCGNIQCGTNQICIQDSCQ 1626

Query: 388  CPKGKVRCGAGCVAVASFQRDERNCGGC-GTVCGTGQTCDTGICVCPDLPASSNGGTRLQ 564
            C  G  +    C+        E     C    CG  Q C    C C       +G   LQ
Sbjct: 1627 CRPGYYQQPGSCLQDRCNCIQEVESDSCLNRQCGMNQVCIQDQCQC------RSGYLVLQ 1680

Query: 565  QFWDDDLKTCVALRPGECKGGFLTAAG 645
            +    D   CV        GG +   G
Sbjct: 1681 ETCISDRCNCVQPSVDAISGGCMNQCG 1707

 Score = 35.8 bits (81), Expect = 0.96
 Identities = 26/94 (27%), Positives = 35/94 (36%), Gaps = 5/94 (5%)
 Frame = +1

Query: 196  AGPCPCKEGDGLVCVNKTCQCRSG-----TTYCGANDGCVNLSKDNDMHCGACNNKCTGG 360
            +G C  + G+  VC+   C CR+G      T  G    CV     +    G C  +C   
Sbjct: 1699 SGGCMNQCGNNQVCIQDQCLCRNGYYAQPETCTGDRCNCVQHVVPD---MGNCQRQCGNN 1755

Query: 361  AKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNC 462
              C   +C C  G       CVA      D+ NC
Sbjct: 1756 QVCIQDQCQCRNGYYAQTETCVA------DKCNC 1783

 Score = 35.0 bits (79), Expect = 1.6
 Identities = 40/132 (30%), Positives = 53/132 (39%), Gaps = 14/132 (10%)
 Frame = +1

Query: 193  TAGPC-PCKEGDGL----VCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHCGACNNK--C 351
            TA P  PC E        VC N  C+C +       +  CV   K N  +  +CNN+  C
Sbjct: 723  TAAPGEPCSEKVACSPFSVCENNVCKCVNNMMI--RDKMCVQRRKVNIGN--SCNNEDQC 778

Query: 352  TGGAKCRNGKCVCPKGKVRCGAGCVAVASFQRDERNCGGCGTVCG-----TGQT-CDTGI 513
             G + C +  C C  G V     CV     +  + N    G +C      TGQ+ C  G+
Sbjct: 779  LGNSTCMDNNCQCGIGFVASMDVCVL---RKTGKPNFLTPGYLCNPEDICTGQSVCIKGV 835

Query: 514  CVC-PDLPASSN 546
            C C PD     N
Sbjct: 836  CQCQPDYKQMHN 847

 Score = 34.7 bits (78), Expect = 2.1
 Identities = 27/109 (24%), Positives = 42/109 (37%), Gaps = 3/109 (2%)
 Frame = +1

Query: 232  VCVNKTCQCRSGTTYCGANDGCVNLSKDNDMHCGACNNK--CTGGAKC-RNGKCVCPKGK 402
            VC+   CQC+    Y   ++ CV   K+  +    C+++  C  G  C  +GKC CP+G 
Sbjct: 830  VCIKGVCQCQPD--YKQMHNICVK--KNIGIEGSPCSSRDDCGEGLMCGASGKCSCPEGL 885

Query: 403  VRCGAGCVAVASFQRDERNCGGCGTVCGTGQTCDTGICVCPDLPASSNG 549
                  C    S+ +  + C            C    C C     + NG
Sbjct: 886  FSVNGKC---RSYVQLGQTCTSDDRCAERNAQCQENYCTCRTGYTNING 931

 Score = 34.3 bits (77), Expect = 2.8
 Identities = 20/63 (31%), Positives = 24/63 (37%), Gaps = 3/63 (4%)
 Frame = +1

Query: 349  CTGGAKCRNGKCVCPKGKVRCGAGCVA-VASFQRDERNCGGC--GTVCGTGQTCDTGICV 519
            C+ GA C  G C CP+        CV  VA  +        C  G  C     C  GIC 
Sbjct: 1032 CSKGAICEKGVCSCPETFFESDGACVKNVAKIKVVVPPLSSCLGGEECSGNSECVHGICF 1091

Query: 520  CPD 528
            C +
Sbjct: 1092 CKE 1094

 Score = 33.1 bits (74), Expect = 6.2
 Identities = 18/67 (26%), Positives = 26/67 (37%), Gaps = 4/67 (5%)
 Frame = +1

Query: 340  NNKCTGGAKCRNGKCVCPKGKVRCGAGCV----AVASFQRDERNCGGCGTVCGTGQTCDT 507
            N+ C    +C    C C    V+    CV     ++S      +C      C  G TC+ 
Sbjct: 1351 NSHCESQRQCLKNVCKCASNFVQSSFSCVPRMSVISSLALPGESCR--KGFCVGGSTCEN 1408

Query: 508  GICVCPD 528
             +C CPD
Sbjct: 1409 FMCKCPD 1415



EST assemble image


clone accession position
1 LCL037h10_r AV628184 1 326
2 MXL089g05_r BP098232 17 381
3 HCL049g01_r AV642322 22 511
4 HCL025e08_r AV640969 23 506
5 MXL008f04_r BP093454 34 511
6 LCL038f03_r AV628218 38 362
7 HCL075d06_r AV643753 52 518
8 MXL088d05_r BP098156 315 756
9 LCL055b03_r AV629243 342 875




Chlamydomonas reinhardtii
Kazusa DNA Research Institute