KCC002375A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002375A_C01 KCC002375A_c01
CCTAAACACATACGGGGAGAGCCAAAGTACGCAAATTGGCTCTCGCACCGCCAATCCGAC
CTTTTCTGCACCGCCTCTTTGGTGCACAACACCTCGGACTCACACGGAGGCTGGACGAAG
GCGAGGGGGCTGTTGCTAGCCAGGCCTTGACTTCGCCCCTGGAGAGCGCGCGCCCTCTGG
AGCGCGCAGAAACGTCGGGATAAGATGGACAGGTCGCTTCTCTCCAGGACCTCTCCACGC
ATGCAGCTCGGCCGTCCCCAGCAGCTCCCGCCTCCGACCGTGCCTCTTGCGCAAGTCCCC
CGACTGCAGAGACGCTGCGTTGTCGGCAGCCGGGTGTGCCAGCCAGTGGTTGCTGTCCGG
CCAGGCAGGGCATCCGCTGGTCGTGGCGGGCGGCTCGTGGTTTCTTCTGTGGATATGTCC
AACTCGCCCCTGTCATCAATGGACGCCGGCGAGGGCCTTGACATCATGTTTGACAACAAC
AGCGACGCGGAGTGCACGGTGGTGACGGTAGAGGGCAAGGACAAGGCGCACCTGCTGATG
AGCCTGACCGGCGGCTTCTCCAGCGCCGGCCTGACCGTCATCTCCGCCTCCATCACCAGT
GACGACGGCCGCGTGCTGGATGTCTTCCGCGTGCAGACCGCTGATGGCAAGAAGGTGCCC
GAGGAGCAGTTCCCGTCCGTGCGTGAGCACATCCTGTCTGTGACCGCCACCAGCAGCCGC
TCCTCCATGCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002375A_C01 KCC002375A_c01
         (732 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_197914.1| ACT domain-containing protein [Arabidopsis thal...    51  2e-05
sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase (PII urid...    51  2e-05
ref|NP_565146.1| uridylyltransferase-related [Arabidopsis thalia...    50  4e-05
gb|AAM65519.1| unknown [Arabidopsis thaliana]                          50  4e-05
pir||H96714 protein F4N2.2 [imported] - Arabidopsis thaliana gi|...    47  3e-04

>ref|NP_197914.1| ACT domain-containing protein [Arabidopsis thaliana]
          Length = 500

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 30/88 (34%), Positives = 46/88 (52%)
 Frame = +1

Query: 463 IMFDNNSDAECTVVTVEGKDKAHLLMSLTGGFSSAGLTVISASITSDDGRVLDVFRVQTA 642
           +  DN+S  +CTVV V  ++K  LL+ +    +   L +  + I+SD G  +DVF V+  
Sbjct: 27  VYIDNDSIQDCTVVKVNSENKQGLLLEVVQILTDMNLIITKSYISSDGGWFMDVFHVKDE 86

Query: 643 DGKKVPEEQFPSVREHILSVTATSSRSS 726
            G K+ ++   SV  HI     TS R S
Sbjct: 87  HGNKLTDK---SVINHIKHAIGTSRRES 111

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase (PII uridylyl-transferase)
            (Uridylyl removing enzyme) (UTase)
            gi|19421768|gb|AAL87737.1|AF149716_1 uridylyltransferase
            [Azospirillum brasilense]
          Length = 933

 Score = 50.8 bits (120), Expect = 2e-05
 Identities = 29/86 (33%), Positives = 46/86 (52%), Gaps = 1/86 (1%)
 Frame = +1

Query: 463  IMFDNNSDAECTVVTVEGKDKAHLLMSLTGGFSSAGLTVISASITSDDGRVLDVFRVQTA 642
            ++ DNN+    TV+ V G+D+  LL  LT   ++  L + SA I++   + +DVF V+  
Sbjct: 847  VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDV 906

Query: 643  DGKKVP-EEQFPSVREHILSVTATSS 717
             G KV  E +   +RE +L   A  S
Sbjct: 907  FGLKVTHENKLAQIRERLLHALADPS 932

>ref|NP_565146.1| uridylyltransferase-related [Arabidopsis thaliana]
           gi|30699222|ref|NP_849896.1| uridylyltransferase-related
           [Arabidopsis thaliana] gi|30699224|ref|NP_849897.1|
           uridylyltransferase-related [Arabidopsis thaliana]
           gi|25370628|pir||H96798 hypothetical protein F22K20.9
           [imported] - Arabidopsis thaliana
           gi|2829923|gb|AAC00631.1| Similar to uridylyl
           transferases [Arabidopsis thaliana]
           gi|13430820|gb|AAK26032.1|AF360322_1 unknown protein
           [Arabidopsis thaliana] gi|21280959|gb|AAM44939.1|
           unknown protein [Arabidopsis thaliana]
           gi|22138096|gb|AAM93428.1| ACR3 [Arabidopsis thaliana]
          Length = 453

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 28/87 (32%), Positives = 43/87 (49%)
 Frame = +1

Query: 463 IMFDNNSDAECTVVTVEGKDKAHLLMSLTGGFSSAGLTVISASITSDDGRVLDVFRVQTA 642
           +  DN S  ECT+V V+  +K  +L+ +    +   LT+  A I+SD G  +DVF V   
Sbjct: 25  VSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGWFMDVFHVTDQ 84

Query: 643 DGKKVPEEQFPSVREHILSVTATSSRS 723
            G KV + +     E +L     +S S
Sbjct: 85  QGNKVTDSKTIDYIEKVLGPKGHASAS 111

>gb|AAM65519.1| unknown [Arabidopsis thaliana]
          Length = 453

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 28/87 (32%), Positives = 43/87 (49%)
 Frame = +1

Query: 463 IMFDNNSDAECTVVTVEGKDKAHLLMSLTGGFSSAGLTVISASITSDDGRVLDVFRVQTA 642
           +  DN S  ECT+V V+  +K  +L+ +    +   LT+  A I+SD G  +DVF V   
Sbjct: 25  VSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGWFMDVFHVTDQ 84

Query: 643 DGKKVPEEQFPSVREHILSVTATSSRS 723
            G KV + +     E +L     +S S
Sbjct: 85  QGNKVTDSKTIDYIEKVLGPKGHASAS 111

>pir||H96714 protein F4N2.2 [imported] - Arabidopsis thaliana
           gi|6730631|gb|AAF27052.1|AC008262_1 F4N2.2 [Arabidopsis
           thaliana]
          Length = 445

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 23/68 (33%), Positives = 39/68 (56%)
 Frame = +1

Query: 463 IMFDNNSDAECTVVTVEGKDKAHLLMSLTGGFSSAGLTVISASITSDDGRVLDVFRVQTA 642
           ++ DN+S  + TV+ V+  ++  +L+ +    +   LT+  A I+SD G  +DVF V   
Sbjct: 17  VVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVTDQ 76

Query: 643 DGKKVPEE 666
           DG KV +E
Sbjct: 77  DGNKVTDE 84

 Score = 34.3 bits (77), Expect = 2.0
 Identities = 18/58 (31%), Positives = 29/58 (49%)
 Frame = +1

Query: 520 DKAHLLMSLTGGFSSAGLTVISASITSDDGRVLDVFRVQTADGKKVPEEQFPSVREHI 693
           D+  LL ++T  F    LTV  A + +  G+ L+ F V  A G  +  +   S+R+ I
Sbjct: 338 DRVGLLSNVTRIFRENSLTVTRAEVKTKGGKALNTFYVSDASGYSIDAKTIDSIRQTI 395

 Score = 33.1 bits (74), Expect = 4.6
 Identities = 21/78 (26%), Positives = 32/78 (40%)
 Frame = +1

Query: 433 SSMDAGEGLDIMFDNNSDAECTVVTVEGKDKAHLLMSLTGGFSSAGLTVISASITSDDGR 612
           S  D  +  D+  DN  D + +VVTV  KD+  LL       +     V   S+ ++   
Sbjct: 231 SIQDERQRPDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTE 290

Query: 613 VLDVFRVQTADGKKVPEE 666
               + V+  DG  V  E
Sbjct: 291 AFQEYYVRHIDGSPVKSE 308



EST assemble image


clone accession position
1 MXL017g08_r BP094073 1 392
2 MXL029h05_r BP094798 1 245
3 HCL025b06_r AV640946 1 435
4 MXL028c09_r BP094728 7 436
5 MXL042h04_r BP095507 13 475
6 LCL083f06_r AV630744 116 546
7 LCL012g03_r AV626636 167 636
8 MXL094f01_r BP098520 220 656
9 LCL028d11_r AV627554 307 732




Chlamydomonas reinhardtii
Kazusa DNA Research Institute