KCC002373A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002373A_C01 KCC002373A_c01
tGCGACCGACGTGTATAGGTCGCGTTATTAAGGGTTACTTGACCAGTAGGCACAACGAGG
AAGTAGAATGCAGTCGTCTCTTTGTGCCGGCTCTGCCGGCGTCGGCGTCGGCCGCGCGGC
CGCGCCCATGGCACAGCGGAGCATGCTCTTCAAGCGCCCAATCTTCGTCGGCACCGCTGC
GGAGCTGGGGCTGAAGCCGGCGACGTCGGCAATCGCCAAGAAGAGCAAGCAGTCACGTGC
TCAGACTATTCGCGTTCAGGCTTCTGGCAACGCGGCTGCCCTGCCATGGCAGGCGGCCAT
GTCAGAGATTAAGAAGCGCCGCGACATCAACACCATCATGATTATTGGCGCCGGTCCGAT
TGTCATTGGCCAGGCTTGCGAGTTTGACTACTCGGGCACCCAGGCTTGCAAGTCGCTGAA
GAAGGAGGGCTACCGCGTGATTCTGCTCAACTCCAACCCTGCCACGATCATGACGGACCC
CGGCATGGCGGACCGCACCTACGTTGGGCCCATGACCCCGGAGCTGGCGGAGCAGATTCT
GGCCAAGGAGCGCCCCGATGCCATCCTGCCCACCATGGGTGGCCAGAACGGCCTGAACCT
GGCCAAGACCCTGGCTGAGCGCGGCATCCTGGCCAAGTACGGCATTGAGCTCATTGGCGC
CAAGCTGCCCTCCATCGACCGTGCCGAGGACCGCGAGCTGTTCAAGCAGTCCATGACGCG
CATCGGCCTCAAGTGCGCCAAGAGCGCCACCGACAACACGCTGGAGGAGGCCCTGGTGAT
TGCGGCCGAGATCGGCAAGTACCCCATCATCATCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002373A_C01 KCC002373A_c01
         (816 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC85727.1| putative carbamoyl phosphate synthase large subu...   244  1e-63
ref|NP_683122.1| carbamoyl-phosphate synthase pyrimidine-specifi...   239  5e-62
sp|Q55756|CARB_SYNY3 Carbamoyl-phosphate synthase large chain (C...   236  3e-61
ref|NP_442333.1| carbamoyl-phosphate synthase, pyrimidine-specif...   236  3e-61
ref|NP_564338.1| carbamoylphosphate synthetase -related [Arabido...   236  4e-61

>emb|CAC85727.1| putative carbamoyl phosphate synthase large subunit [Nicotiana
           tabacum]
          Length = 1203

 Score =  244 bits (623), Expect = 1e-63
 Identities = 122/207 (58%), Positives = 153/207 (72%)
 Frame = +2

Query: 194 KPATSAIAKKSKQSRAQTIRVQASGNAAALPWQAAMSEIKKRRDINTIMIIGAGPIVIGQ 373
           +P+        K+     +  Q+  N + +  +    ++ KR DI  I+I+GAGPIVIGQ
Sbjct: 60  RPSVLGHTHLRKRVNFSIVNEQSPSNDSVVQ-KGKQQKLGKRTDIKKILILGAGPIVIGQ 118

Query: 374 ACEFDYSGTQACKSLKKEGYRVILLNSNPATIMTDPGMADRTYVGPMTPELAEQILAKER 553
           ACEFDYSGTQACK+L++EGY VIL+NSNPATIMTDP MADRTY+ PMTPEL EQ+L +ER
Sbjct: 119 ACEFDYSGTQACKALREEGYEVILINSNPATIMTDPEMADRTYIEPMTPELVEQVLERER 178

Query: 554 PDAILPTMGGQNGLNLAKTLAERGILAKYGIELIGAKLPSIDRAEDRELFKQSMTRIGLK 733
           PDA+LPTMGGQ  LNLA  LAE G+L  YG+ELIGAKL +I +AEDR+LFKQ+M  IG+K
Sbjct: 179 PDALLPTMGGQTALNLAVXLAESGVLDXYGVELIGAKLGAIKKAEDRDLFKQAMKNIGIK 238

Query: 734 CAKSATDNTLEEALVIAAEIGKYPIII 814
              S   NTLEE + IA EIG++P+II
Sbjct: 239 TPPSGIGNTLEECIEIAGEIGEFPLII 265

 Score =  102 bits (255), Expect = 6e-21
 Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 7/217 (3%)
 Frame = +2

Query: 185  LGLKPATSAIAKKSKQSRAQTIRVQASGNAAALPWQAAMSEIKKRRDINTIMIIGAGPIV 364
            LG+KPA   +   + +  A T  + +S +   +  ++A +  KK      ++I+G GP  
Sbjct: 616  LGVKPAYKRVDTCAAEFEADTPYMYSSYD---IECESAPTGRKK------VLILGGGPNR 666

Query: 365  IGQACEFDYSGTQACKSLKKEGYRVILLNSNPATIMTDPGMADRTYVGPMTPELAEQILA 544
            IGQ  EFDY       +L+  GY  I++NSNP T+ TD   +DR Y  P+T E    I+ 
Sbjct: 667  IGQGIEFDYCCCHTSFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNIID 726

Query: 545  KERPDAILPTMGGQNGLNLA----KTLAERGILAKYG---IELIGAKLPSIDRAEDRELF 703
             E PD I+   GGQ  L LA      L ER    + G   + + G    SID AEDRE F
Sbjct: 727  LEGPDGIIVQFGGQTPLKLALPIQNYLDERRPKTRSGAGFVRIWGTSPDSIDAAEDRERF 786

Query: 704  KQSMTRIGLKCAKSATDNTLEEALVIAAEIGKYPIII 814
               +  + +   K     + ++A+ IA E+G YP+++
Sbjct: 787  NAILNELQIVQPKGGIAKSEKDAVAIATEVG-YPVVV 822

>ref|NP_683122.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Thermosynechococcus elongatus BP-1]
           gi|22296060|dbj|BAC09884.1| carbamoyl-phosphate synthase
           pyrimidine-specific large chain [Thermosynechococcus
           elongatus BP-1]
          Length = 1100

 Score =  239 bits (609), Expect = 5e-62
 Identities = 114/167 (68%), Positives = 141/167 (84%)
 Frame = +2

Query: 314 KRRDINTIMIIGAGPIVIGQACEFDYSGTQACKSLKKEGYRVILLNSNPATIMTDPGMAD 493
           +R DI+ I+IIG+GPIVIGQACEFDYSGTQACK+L++EGY VIL+NSNPATIMTDP +AD
Sbjct: 3   RRTDISRILIIGSGPIVIGQACEFDYSGTQACKALREEGYEVILINSNPATIMTDPEIAD 62

Query: 494 RTYVGPMTPELAEQILAKERPDAILPTMGGQNGLNLAKTLAERGILAKYGIELIGAKLPS 673
           RTY+ P+TPE+ E+++A ERPDA+LPTMGGQ  LNLA  LA+ G+L +YG+ELIGAKLP+
Sbjct: 63  RTYIEPLTPEMVEKVIAAERPDALLPTMGGQTALNLAVALAKSGVLDRYGVELIGAKLPA 122

Query: 674 IDRAEDRELFKQSMTRIGLKCAKSATDNTLEEALVIAAEIGKYPIII 814
           I+ AEDR+LFK++M RIG+    S   NTLEEA  IA EIG YP+II
Sbjct: 123 IEMAEDRKLFKEAMQRIGVAVCPSGLANTLEEARAIAQEIGVYPLII 169

 Score =  108 bits (271), Expect = 8e-23
 Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 4/188 (2%)
 Frame = +2

Query: 263  SGNAAALPWQAAMSEIKKRRDINTIMIIGAGPIVIGQACEFDYSGTQACKSLKKEGYRVI 442
            SG+   LP ++ +   +K R    +MI+G+GP  IGQ  EFDY    A  +L+ + Y  I
Sbjct: 557  SGDVELLPPESEVLPPRKPR----VMILGSGPNRIGQGIEFDYCCCHAAYALRADDYETI 612

Query: 443  LLNSNPATIMTDPGMADRTYVGPMTPELAEQILAKERPDAILPTMGGQNGLNLA----KT 610
            ++NSNP T+ TD   +DR Y  P+T E    I+  ERP  I+   GGQ  L LA    + 
Sbjct: 613  MVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEVERPVGIIIQFGGQTPLKLALPLQRY 672

Query: 611  LAERGILAKYGIELIGAKLPSIDRAEDRELFKQSMTRIGLKCAKSATDNTLEEALVIAAE 790
            L ++G   + G ++ G    SID AEDRE F++ +  + +    + T  +  EAL IA  
Sbjct: 673  LQQQG--DRLGTQIWGTSPDSIDIAEDRERFEKILRELNIPQPPNGTARSYAEALSIAER 730

Query: 791  IGKYPIII 814
            IG YP+++
Sbjct: 731  IG-YPVVV 737

>sp|Q55756|CARB_SYNY3 Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain)
          Length = 1081

 Score =  236 bits (602), Expect = 3e-61
 Identities = 110/167 (65%), Positives = 140/167 (82%)
 Frame = +2

Query: 314 KRRDINTIMIIGAGPIVIGQACEFDYSGTQACKSLKKEGYRVILLNSNPATIMTDPGMAD 493
           +R D+N IMI+GAGPIVIGQACEFDYSGTQACK+LK+EGY V+L+NSNPA+IMTDP +AD
Sbjct: 3   RRNDLNKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLVNSNPASIMTDPELAD 62

Query: 494 RTYVGPMTPELAEQILAKERPDAILPTMGGQNGLNLAKTLAERGILAKYGIELIGAKLPS 673
           RTY+ P+ PE+ E+I+ KERPDA+LPTMGGQ  LNLA +L++ G+L KYG+ELIGAKLP+
Sbjct: 63  RTYIEPLIPEIVEKIIEKERPDAVLPTMGGQTALNLAVSLSKSGVLEKYGVELIGAKLPA 122

Query: 674 IDRAEDRELFKQSMTRIGLKCAKSATDNTLEEALVIAAEIGKYPIII 814
           I+  EDRELFK++M RIG+    S   +++EEA  +A EIG YP+II
Sbjct: 123 IEMGEDRELFKEAMARIGVPVCPSGIASSIEEARQVAHEIGSYPLII 169

 Score = 95.5 bits (236), Expect = 9e-19
 Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
 Frame = +2

Query: 335  IMIIGAGPIVIGQACEFDYSGTQACKSLKKEGYRVILLNSNPATIMTDPGMADRTYVGPM 514
            +MI+G GP  IGQ  EFDY    A  SL   GY  I++NSNP T+ TD   +DR Y  P+
Sbjct: 561  VMILGGGPNRIGQGIEFDYCCCHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPL 620

Query: 515  TPELAEQILAKERPDAILPTMGGQNGLNLAKTLAE--RGILAKYGIELIGAKLPSIDRAE 688
            T E    I+  E P  I+   GGQ  L LA  L +           ++ G    SID AE
Sbjct: 621  TKEDVLNIIEAENPVGIIIQFGGQTPLKLAVPLQKYLNSPDCPVQTKIWGTSPDSIDTAE 680

Query: 689  DRELFKQSMTRIGLKCAKSATDNTLEEALVIAAEIGKYPIII 814
            DRE F++ +  + +    +      EE+ V+A  I  YP+++
Sbjct: 681  DRERFEKILHELEISQPPNGIARDYEESRVVANRI-SYPVVV 721

>ref|NP_442333.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Synechocystis sp. PCC 6803] gi|7438086|pir||S76557
           carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC
           6.3.5.5) large chain [similarity] - Synechocystis sp.
           (strain PCC 6803) gi|1001668|dbj|BAA10403.1|
           carbamoyl-phosphate synthase, pyrimidine-specific, large
           chain [Synechocystis sp. PCC 6803]
          Length = 1105

 Score =  236 bits (602), Expect = 3e-61
 Identities = 110/167 (65%), Positives = 140/167 (82%)
 Frame = +2

Query: 314 KRRDINTIMIIGAGPIVIGQACEFDYSGTQACKSLKKEGYRVILLNSNPATIMTDPGMAD 493
           +R D+N IMI+GAGPIVIGQACEFDYSGTQACK+LK+EGY V+L+NSNPA+IMTDP +AD
Sbjct: 27  RRNDLNKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLVNSNPASIMTDPELAD 86

Query: 494 RTYVGPMTPELAEQILAKERPDAILPTMGGQNGLNLAKTLAERGILAKYGIELIGAKLPS 673
           RTY+ P+ PE+ E+I+ KERPDA+LPTMGGQ  LNLA +L++ G+L KYG+ELIGAKLP+
Sbjct: 87  RTYIEPLIPEIVEKIIEKERPDAVLPTMGGQTALNLAVSLSKSGVLEKYGVELIGAKLPA 146

Query: 674 IDRAEDRELFKQSMTRIGLKCAKSATDNTLEEALVIAAEIGKYPIII 814
           I+  EDRELFK++M RIG+    S   +++EEA  +A EIG YP+II
Sbjct: 147 IEMGEDRELFKEAMARIGVPVCPSGIASSIEEARQVAHEIGSYPLII 193

 Score = 95.5 bits (236), Expect = 9e-19
 Identities = 59/162 (36%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
 Frame = +2

Query: 335  IMIIGAGPIVIGQACEFDYSGTQACKSLKKEGYRVILLNSNPATIMTDPGMADRTYVGPM 514
            +MI+G GP  IGQ  EFDY    A  SL   GY  I++NSNP T+ TD   +DR Y  P+
Sbjct: 585  VMILGGGPNRIGQGIEFDYCCCHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPL 644

Query: 515  TPELAEQILAKERPDAILPTMGGQNGLNLAKTLAE--RGILAKYGIELIGAKLPSIDRAE 688
            T E    I+  E P  I+   GGQ  L LA  L +           ++ G    SID AE
Sbjct: 645  TKEDVLNIIEAENPVGIIIQFGGQTPLKLAVPLQKYLNSPDCPVQTKIWGTSPDSIDTAE 704

Query: 689  DRELFKQSMTRIGLKCAKSATDNTLEEALVIAAEIGKYPIII 814
            DRE F++ +  + +    +      EE+ V+A  I  YP+++
Sbjct: 705  DRERFEKILHELEISQPPNGIARDYEESRVVANRI-SYPVVV 745

>ref|NP_564338.1| carbamoylphosphate synthetase -related [Arabidopsis thaliana]
           gi|25293882|pir||F86422 carbamoyl-phosphate synthase
           (ammonia) (EC 6.3.4.16) - Arabidopsis thaliana
           gi|1477480|gb|AAB67843.1| carbamoyl phosphate synthetase
           large chain [Arabidopsis thaliana]
           gi|9972356|gb|AAG10606.1|AC008030_6 carbamoyl phosphate
           synthetase large chain (carB) [Arabidopsis thaliana]
           gi|14194125|gb|AAK56257.1|AF367268_1 At1g29900/F1N18_6
           [Arabidopsis thaliana] gi|22137066|gb|AAM91378.1|
           At1g29900/F1N18_6 [Arabidopsis thaliana]
          Length = 1187

 Score =  236 bits (601), Expect = 4e-61
 Identities = 115/169 (68%), Positives = 136/169 (80%)
 Frame = +2

Query: 308 IKKRRDINTIMIIGAGPIVIGQACEFDYSGTQACKSLKKEGYRVILLNSNPATIMTDPGM 487
           + KR D+  IMI+GAGPIVIGQACEFDYSGTQACK+L++EGY VIL+NSNPATIMTDP  
Sbjct: 92  VGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALREEGYEVILINSNPATIMTDPET 151

Query: 488 ADRTYVGPMTPELAEQILAKERPDAILPTMGGQNGLNLAKTLAERGILAKYGIELIGAKL 667
           A+RTY+ PMTPEL EQ++ KERPDA+LPTMGGQ  LNLA  LAE G L KYG+ELIGAKL
Sbjct: 152 ANRTYIAPMTPELVEQVIEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKL 211

Query: 668 PSIDRAEDRELFKQSMTRIGLKCAKSATDNTLEEALVIAAEIGKYPIII 814
            +I +AEDRELFK +M  IGLK   S    TL+E   IA +IG++P+II
Sbjct: 212 GAIKKAEDRELFKDAMKNIGLKTPPSGIGTTLDECFDIAEKIGEFPLII 260

 Score = 99.8 bits (247), Expect = 5e-20
 Identities = 58/167 (34%), Positives = 85/167 (50%), Gaps = 7/167 (4%)
 Frame = +2

Query: 335  IMIIGAGPIVIGQACEFDYSGTQACKSLKKEGYRVILLNSNPATIMTDPGMADRTYVGPM 514
            ++I+G GP  IGQ  EFDY       +L+  GY  I+LNSNP T+ TD   +DR Y  P+
Sbjct: 652  VLILGGGPNRIGQGIEFDYCCCHTSFALQDAGYETIMLNSNPETVSTDYDTSDRLYFEPL 711

Query: 515  TPELAEQILAKERPDAILPTMGGQNGLNLAKTLAE-------RGILAKYGIELIGAKLPS 673
            T E    ++  E+PD I+   GGQ  L LA  +           +     + + G    S
Sbjct: 712  TIEDVLNVIDLEKPDGIIVQFGGQTPLKLALPIKHYLDKHMPMSLSGAGPVRIWGTSPDS 771

Query: 674  IDRAEDRELFKQSMTRIGLKCAKSATDNTLEEALVIAAEIGKYPIII 814
            ID AEDRE F   +  + ++  K     +  +AL IA E+G YP+++
Sbjct: 772  IDAAEDRERFNAILDELKIEQPKGGIAKSEADALAIAKEVG-YPVVV 817



EST assemble image


clone accession position
1 MXL056g12_r BP096327 1 461
2 HCL024f09_r AV640919 2 526
3 HCL090g01_r AV644570 6 367
4 MXL094h02_r BP098532 21 497
5 MXL062f11_r BP096667 22 403
6 HCL025b03_r AV640944 22 474
7 MXL038b08_r BP095213 30 228
8 MXL081e01_r BP097795 43 405
9 HCL076f05_r AV643818 54 623
10 MXL035a03_r BP095050 349 816




Chlamydomonas reinhardtii
Kazusa DNA Research Institute