KCC002366A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002366A_C01 KCC002366A_c01
cgacgcctcCGGAACGGCGCGGCCGCCGGTAGGCGTGCCGGGCACCCTGTGCCGCACCAT
CTCCGCGGCCGCAGCGGTCGTCTCGTCCGCGGCGGCTGCGGCGGCGGCGCTTGCGGAGAT
TGAGGAGGAGGAGGCGTCCGCCAGCGGCGCCTTCGCCACGCTGCAGCACACCTGCACGCG
CATGCCCATGCCTGTGGCCGAGGACACCACAGGAGCTGGTGGCGCCACCGGCGCCGGCAC
GCCTGCGACCGCAGCAGCTGGCCGCGGTCTGGGGCCCACGGTGATCAGCACCACCGCCGG
CGGCCACCCGCGCATCAGCCGCGCGAACTTTCACAGCAGCTTCCGCTTCTACGGCGCCCC
GGGTGCGGGTATGGGTGTGGCCATATGCGCCCCTTCGCACGGTCCAATCGCAGCCGCTGC
CGCCGCGGTTGCGCCATCTGCTGCGGCGTATTAAGCGGCGGCCTGTGAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002366A_C01 KCC002366A_c01
         (469 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_346988.1| protein tyrosine phosphatase, receptor type, F ...    59  4e-08
dbj|BAB03282.1| EBNA-1 [Cynomolgus Epstein-Barr Virus Si-IIA]          55  4e-07
ref|ZP_00016151.1| COG0621: 2-methylthioadenine synthetase [Rhod...    54  9e-07
sp|P54320|ELS_MOUSE Elastin precursor (Tropoelastin) gi|2144808|...    52  4e-06
ref|NP_031951.2| elastin; tropoelastin [Mus musculus] gi|2633476...    52  4e-06

>ref|XP_346988.1| protein tyrosine phosphatase, receptor type, F [Rattus norvegicus]
          Length = 197

 Score = 58.5 bits (140), Expect = 4e-08
 Identities = 55/156 (35%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
 Frame = +2

Query: 5   ASGTARPPVGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRM 184
           A+G A P     GT     +AAAA  ++AAAAA   A      A A+ A A         
Sbjct: 11  AAGAAAPA----GTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAA 66

Query: 185 PMPVAEDTTGAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSSFRFYGAPG 364
               A     A  A  AG  ATAAA  G   T  +  A G    + A   ++     A G
Sbjct: 67  AAGAAATAGAAAAAAAAGAAATAAAAAGAAAT--AEAAAGAAAAAAAAAGAAEASEAAAG 124

Query: 365 AGMGVAICAPSHGPIA-AAAAAVAPSAAAY*AAACE 469
           A    A  A + G  A AAAAA A SAAA  A A E
Sbjct: 125 AAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAE 160

 Score = 51.2 bits (121), Expect = 6e-06
 Identities = 48/152 (31%), Positives = 61/152 (39%)
 Frame = +2

Query: 5   ASGTARPPVGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRM 184
           A+           T     +AA A  ++ AAAAAA A      A+A+GA AT +      
Sbjct: 47  AAAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAE------ 100

Query: 185 PMPVAEDTTGAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSSFRFYGAPG 364
               A     A  A GA   + AAAG        +  AG     + A   +S     A  
Sbjct: 101 --AAAGAAAAAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAAS---AAAAA 155

Query: 365 AGMGVAICAPSHGPIAAAAAAVAPSAAAY*AA 460
           AG   A  A +    AAAAAA A +AAA  AA
Sbjct: 156 AGAAEAPAAAAGAAAAAAAAAAAAAAAAATAA 187

 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 44/149 (29%), Positives = 52/149 (34%), Gaps = 2/149 (1%)
 Frame = +2

Query: 8   SGTARPPVGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRMP 187
           +  A    G   T     +AAAA  ++ AAAAA  A   E  A A+ A A          
Sbjct: 61  TAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAAAAGAAEASE 120

Query: 188 MPVAEDTTGAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSSFRFYGAPGA 367
                    A  A  AG  ATAAA  G      +                      AP A
Sbjct: 121 AAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAE----------------APAA 164

Query: 368 GMGVAICAPSHGPIAAAAAAVA--PSAAA 448
             G A  A +    AAAAAA A  P+ AA
Sbjct: 165 AAGAAAAAAAAAAAAAAAAATAAVPAGAA 193

 Score = 48.5 bits (114), Expect = 4e-05
 Identities = 47/154 (30%), Positives = 57/154 (36%)
 Frame = -2

Query: 462 AAA*YAAADGATAAAAAAIGPCEGAHMATPIPAPGAP*KRKLL*KFARLMRGWPPAVVLI 283
           AAA  AAA GA A  AAA G    A  AT   A  A                   A    
Sbjct: 32  AAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAA-------------------AGAAA 72

Query: 282 TVGPRPRPAAAVAGVPAPVAPPAPVVSSATGMGMRVQVCCSVAKAPLADASSSSISASAA 103
           T G     AAA A   A  A  A   + A   G       +   A  ++A++ + +A+AA
Sbjct: 73  TAGAAAAAAAAGAAATAAAAAGAAATAEAAA-GAAAAAAAAAGAAEASEAAAGAAAAAAA 131

Query: 102 AAAAADETTAAAAEMVRHRVPGTPTGGRAVPEAS 1
           AAAAA  T  AAA            G    P A+
Sbjct: 132 AAAAAGATATAAAAAGAASAAAAAAGAAEAPAAA 165

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 42/130 (32%), Positives = 50/130 (38%)
 Frame = -2

Query: 459 AA*YAAADGATAAAAAAIGPCEGAHMATPIPAPGAP*KRKLL*KFARLMRGWPPAVVLIT 280
           AA  AAA GA A AAAA G    A  A    A  A                   A     
Sbjct: 76  AAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAAAA------------------AAGAAE 117

Query: 279 VGPRPRPAAAVAGVPAPVAPPAPVVSSATGMGMRVQVCCSVAKAPLADASSSSISASAAA 100
                  AAA A   A  A      ++A G           A+AP A A +++ +A+AAA
Sbjct: 118 ASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAAAAAAAAAA 177

Query: 99  AAAADETTAA 70
           AAAA   TAA
Sbjct: 178 AAAAAAATAA 187

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 44/135 (32%), Positives = 52/135 (37%), Gaps = 2/135 (1%)
 Frame = -2

Query: 462 AAA*YAAADGATAAAAAAIGPCEGAHMATPIPAPGAP*KRKLL*KFARLMRG--WPPAVV 289
           A A  AAA   TAAAAAA G    A  A    A GA          A          A  
Sbjct: 50  AGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAAAA 109

Query: 288 LITVGPRPRPAAAVAGVPAPVAPPAPVVSSATGMGMRVQVCCSVAKAPLADASSSSISAS 109
               G      AA     A  A  A   ++AT          + A A  A+A +++  A+
Sbjct: 110 AAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAAEAPAAAAGAA 169

Query: 108 AAAAAAADETTAAAA 64
           AAAAAAA    AAAA
Sbjct: 170 AAAAAAAAAAAAAAA 184

 Score = 41.6 bits (96), Expect = 0.005
 Identities = 45/158 (28%), Positives = 57/158 (35%), Gaps = 3/158 (1%)
 Frame = -2

Query: 465 QAAA*YAAADGATAAAAAAIGPCEGAHMATPIPAPGAP*KRKLL*KFARLMRGWPPAVVL 286
           QAAA  AA  G  AAAAAA      A  A    A GA                   A   
Sbjct: 9   QAAAGAAAPAGTAAAAAAAAAAAAAAAAAA---ATGAA------------------ATTA 47

Query: 285 ITVGPRPRPAAAV---AGVPAPVAPPAPVVSSATGMGMRVQVCCSVAKAPLADASSSSIS 115
              G     AAA    A   A  A  A   ++A   G       +   A  A+A++ + +
Sbjct: 48  AAAGAAAAAAAATTAAAAAAAGAAATAGAAAAAAAAGAAATAAAAAGAAATAEAAAGAAA 107

Query: 114 ASAAAAAAADETTAAAAEMVRHRVPGTPTGGRAVPEAS 1
           A+AAAA AA+ + AAA             G  A   A+
Sbjct: 108 AAAAAAGAAEASEAAAGAAAAAAAAAAAAGATATAAAA 145

 Score = 36.2 bits (82), Expect = 0.19
 Identities = 31/97 (31%), Positives = 38/97 (38%)
 Frame = +2

Query: 5   ASGTARPPVGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRM 184
           A+G A       G      S AAA  ++AAAAAAA A      A+A+GA +         
Sbjct: 102 AAGAAAAAAAAAGAA--EASEAAAGAAAAAAAAAAAAGATATAAAAAGAASAAAAAAGAA 159

Query: 185 PMPVAEDTTGAGGATGAGTPATAAAGRGLGPTVISTT 295
             P A     A  A  A   A AAA   +     S T
Sbjct: 160 EAPAAAAGAAAAAAAAAAAAAAAAATAAVPAGAASAT 196

 Score = 33.9 bits (76), Expect = 0.96
 Identities = 21/59 (35%), Positives = 29/59 (48%)
 Frame = -2

Query: 240 VPAPVAPPAPVVSSATGMGMRVQVCCSVAKAPLADASSSSISASAAAAAAADETTAAAA 64
           V A     AP  ++A           + A A    A++++ +A AAAAAAA  T AAAA
Sbjct: 8   VQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAA 66

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 22/76 (28%), Positives = 30/76 (38%)
 Frame = -2

Query: 291 VLITVGPRPRPAAAVAGVPAPVAPPAPVVSSATGMGMRVQVCCSVAKAPLADASSSSISA 112
           V    G       A A   A  A  A   ++ATG           A A  A  ++++ +A
Sbjct: 8   VQAAAGAAAPAGTAAAAAAAAAAAAAAAAAAATGAAATTAAAAGAAAAAAAATTAAAAAA 67

Query: 111 SAAAAAAADETTAAAA 64
           + AAA A     AAAA
Sbjct: 68  AGAAATAGAAAAAAAA 83

>dbj|BAB03282.1| EBNA-1 [Cynomolgus Epstein-Barr Virus Si-IIA]
          Length = 588

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 51/143 (35%), Positives = 58/143 (39%), Gaps = 3/143 (2%)
 Frame = -1

Query: 424 GGSGCDWTVRRGAYGHTHTRTRGAVEAEAAVKVRAADARVAAGG-GADHRGPQTA--ASC 254
           GGSG       GA G   + T G+    A          V AGG GA   G   A  +  
Sbjct: 163 GGSGAGGAGGSGAVGAGGSGTGGSGAVGAGGSGAGGSGAVGAGGSGAGGSGAVGAGGSGA 222

Query: 253 CGRRRAGAGGATSSCGVLGHRHGHARAGVLQRGEGAAGGRLLLLNLRKRRRRSRRGRDDR 74
            G   +GAGGA  S G  G   G +R     RG G + GR      R R R   RGR   
Sbjct: 223 GGAGGSGAGGAGGSGGGGGRGRGGSRGRGGSRGRGGSRGRGGSRG-RGRGRGGSRGRGRG 281

Query: 73  CGRGDGAAQGARHAYRRPRRSGG 5
            GRG G  QG R   +RPR   G
Sbjct: 282 RGRGRGRGQGPRQGEKRPRSPSG 304

 Score = 29.3 bits (64), Expect(2) = 1.2
 Identities = 20/55 (36%), Positives = 21/55 (37%)
 Frame = +1

Query: 67  GRSGRLVRGGCGGGACGD*GGGGVRQRRLRHAAAHLHAHAHACGRGHHRSWWRHR 231
           G SG    GG G G  G  GGGG R R              + GRG  R   R R
Sbjct: 218 GGSGAGGAGGSGAGGAGGSGGGGGRGRGGSRGRGGSRGRGGSRGRGGSRGRGRGR 272

 Score = 28.9 bits (63), Expect(2) = 0.55
 Identities = 26/79 (32%), Positives = 32/79 (39%)
 Frame = +2

Query: 209 TGAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSSFRFYGAPGAGMGVAIC 388
           +GAGGA G+G   + A G G G     + AGG           S    GA GAG   A+ 
Sbjct: 123 SGAGGAGGSGAGDSGAGGAG-GSGAGGSGAGGAGGSGAGGAGGS----GAGGAGGSGAVG 177

Query: 389 APSHGPIAAAAAAVAPSAA 445
           A   G   + A     S A
Sbjct: 178 AGGSGTGGSGAVGAGGSGA 196

 Score = 27.7 bits (60), Expect(2) = 5.3
 Identities = 23/78 (29%), Positives = 30/78 (37%)
 Frame = +2

Query: 212 GAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSSFRFYGAPGAGMGVAICA 391
           GAGG +G G   + A G G G +      G     S A         GA G+G G A  +
Sbjct: 101 GAGGGSGGGAGGSGAGGSGAGGSGAGGAGGSGAGDSGAGGAGG---SGAGGSGAGGAGGS 157

Query: 392 PSHGPIAAAAAAVAPSAA 445
            + G   + A     S A
Sbjct: 158 GAGGAGGSGAGGAGGSGA 175

 Score = 26.6 bits (57), Expect(2) = 5.3
 Identities = 24/74 (32%), Positives = 32/74 (42%)
 Frame = +2

Query: 209 TGAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSSFRFYGAPGAGMGVAIC 388
           +GAGGA G+G   + A G G       + AGG    S A         GA G+G G +  
Sbjct: 136 SGAGGAGGSGAGGSGAGGAG------GSGAGGAGG-SGAGGAGGSGAVGAGGSGTGGSGA 188

Query: 389 APSHGPIAAAAAAV 430
             + G  A  + AV
Sbjct: 189 VGAGGSGAGGSGAV 202

 Score = 24.6 bits (52), Expect(2) = 0.55
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 88  RGGCGGGACGD*GGGG 135
           RGG GGG+ G  GG G
Sbjct: 99  RGGAGGGSGGGAGGSG 114

 Score = 23.5 bits (49), Expect(2) = 5.3
 Identities = 11/24 (45%), Positives = 12/24 (49%)
 Frame = +1

Query: 64  RGRSGRLVRGGCGGGACGD*GGGG 135
           RG +G    GG GG   G  G GG
Sbjct: 99  RGGAGGGSGGGAGGSGAGGSGAGG 122

 Score = 23.1 bits (48), Expect(2) = 1.2
 Identities = 10/22 (45%), Positives = 11/22 (49%)
 Frame = +2

Query: 212 GAGGATGAGTPATAAAGRGLGP 277
           G GG+ G G       GRG GP
Sbjct: 271 GRGGSRGRGRGRGRGRGRGQGP 292

 Score = 22.3 bits (46), Expect(2) = 5.3
 Identities = 15/39 (38%), Positives = 18/39 (45%)
 Frame = +1

Query: 16  GAAAGRRAGHPVPHHLRGRSGRLVRGGCGGGACGD*GGG 132
           G+ +G R G       +  S R    GC GGA G  GGG
Sbjct: 71  GSGSGPRLGDDRRPDGQRPSKRRSCIGCRGGAGGGSGGG 109

>ref|ZP_00016151.1| COG0621: 2-methylthioadenine synthetase [Rhodospirillum rubrum]
          Length = 540

 Score = 53.9 bits (128), Expect = 9e-07
 Identities = 52/151 (34%), Positives = 71/151 (46%), Gaps = 27/151 (17%)
 Frame = +3

Query: 3   TPPERRGRR*ACRAPCAAPSPRPQRS-------SR-------PRRLRRRRLRRLRRRRRP 140
           +P  RRGRR   R+ C APSP P RS       SR       P RLRRRR     RRRRP
Sbjct: 391 SPGPRRGRRRPSRSSCRAPSPSPSRSRFRRPPPSRPSPSRPFPSRLRRRRCHPPPRRRRP 450

Query: 141 PAAPS-PRC---STPARACPCLWPRTPQELVAPPAPARLR-------PQQLAAVWGPR*S 287
              PS PR    S+P R+     PR  +     P+P+  R       P +  +   P  +
Sbjct: 451 RPRPSFPRACPRSSPRRS----RPRRRRRSFPKPSPSSGRRFFQNQWPSRSRSASSPGCA 506

Query: 288 A--PPPAATRASAARTFTAASASTAPRVRVW 374
           A    P A+  +A+  ++A+++S   R R+W
Sbjct: 507 AVCRGPRASWLAASWGWSASASSMIRRSRIW 537

 Score = 38.5 bits (88), Expect = 0.039
 Identities = 41/114 (35%), Positives = 45/114 (38%), Gaps = 1/114 (0%)
 Frame = -3

Query: 398 AKGRIWPHPYPHPGRRR-SGSCCESSRG*CAGGRRRWC*SPWAPDRGQLLRSQACRRRWR 222
           A  R WP P P  GRRR S S C +     +  R R+   P  P R    R    R R R
Sbjct: 384 APRRRWPSPGPRRGRRRPSRSSCRAPSP--SPSRSRFRRPP--PSRPSPSRPFPSRLRRR 439

Query: 221 HQLLWCPRPQAWACACRCAAAWRRRRWRTPPPPQSPQAPPPQPPRTRRPLRPRR 60
                           RC    RRRR R  P P  P+A P   PR  RP R RR
Sbjct: 440 ----------------RCHPPPRRRRPR--PRPSFPRACPRSSPRRSRPRRRRR 475

 Score = 35.0 bits (79), Expect = 0.43
 Identities = 31/90 (34%), Positives = 38/90 (41%), Gaps = 10/90 (11%)
 Frame = -3

Query: 242 ACRRRWRHQLLWCPRPQAWACACRCAA-AWRRRRWRTPPPPQ-SPQAPPPQ--------P 93
           A RRRW        R +    +CR  + +  R R+R PPP + SP  P P         P
Sbjct: 384 APRRRWPSPGPRRGRRRPSRSSCRAPSPSPSRSRFRRPPPSRPSPSRPFPSRLRRRRCHP 443

Query: 92  PRTRRPLRPRRWCGTGCPARLPAAAPFRRR 3
           P  RR  RPR      CP   P  +  RRR
Sbjct: 444 PPRRRRPRPRPSFPRACPRSSPRRSRPRRR 473

>sp|P54320|ELS_MOUSE Elastin precursor (Tropoelastin) gi|2144808|pir||EAMS elastin
           precursor - mouse gi|473274|gb|AAA80155.1| tropoelastin
          Length = 860

 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 53/159 (33%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
 Frame = +2

Query: 29  VGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRMPMPVAEDT 208
           VG  G     + A A +  ++ AAAAA A+  +  A  +GA   L        +P A   
Sbjct: 452 VGAGGFPGYGVGAGAGLGGASPAAAAAAAKAAKYGAGGAGALGGLVPGAVPGALPGAVPA 511

Query: 209 T-GAGGATGAGTPATAAAG--------RGLGPTVISTT----AGGHP-RISRANFHSSFR 346
             GAGG  GAGTPA AAA          GLGP V         GG P  +          
Sbjct: 512 VPGAGGVPGAGTPAAAAAAAAAKAAAKAGLGPGVGGVPGGVGVGGIPGGVGVGGVPGGVG 571

Query: 347 FYGAPGAGMGVAICAPSHGPIAAAAAAVAPSAAAY*AAA 463
             G  G G G      +  P AA +AA A + A Y AAA
Sbjct: 572 PGGVTGIGAGPGGLGGAGSPAAAKSAAKAAAKAQYRAAA 610

 Score = 38.9 bits (89), Expect = 0.030
 Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
 Frame = +2

Query: 74  AVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRMP---MPVAEDTTGAGGATGAGTP 244
           A   + AAAAAA A  +  +  A+G          R+P   +P      G GG  G G P
Sbjct: 352 AGAGTPAAAAAAKAAAKAAKYGAAGGLVP-GGPGVRLPGAGIPGVGGIPGVGGIPGVGGP 410

Query: 245 ATAAAGRGLGPTVISTTAGGHPRISRANFHS----SFRFYGA-----PGAGMGVAICAPS 397
                G   GP  +S  A        A + +        YG      PG G+G       
Sbjct: 411 GIGGPGIVGGPGAVSPAAAAKAAAKAAKYGARGGVGIPTYGVGAGGFPGYGVGAGAGLGG 470

Query: 398 HGPIAAAAAAVAPSAAAY*AAA 463
             P AAAAAA A    A  A A
Sbjct: 471 ASPAAAAAAAKAAKYGAGGAGA 492

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 50/153 (32%), Positives = 58/153 (37%), Gaps = 8/153 (5%)
 Frame = +2

Query: 26  PVGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRMPMPVAED 205
           P GV G   +        V S AAAAAA A     +  A GA          +P   A  
Sbjct: 290 PYGVAGAGGKAGYPTGTGVGSQAAAAAAKAA----KYGAGGAGVLPGVGGGGIPGG-AGA 344

Query: 206 TTGAGGATGAGTPATAAAGRGLGPTVISTTAGG------HPRISRANFHSSFRFYGAPGA 367
             G GG  GAGTPA AAA +          AGG        R+  A         G PG 
Sbjct: 345 IPGIGGIAGAGTPAAAAAAKAAAKAAKYGAAGGLVPGGPGVRLPGAGIPG---VGGIPGV 401

Query: 368 GMGVAICAPSHG--PIAAAAAAVAPSAAAY*AA 460
           G    +  P  G   I     AV+P+AAA  AA
Sbjct: 402 GGIPGVGGPGIGGPGIVGGPGAVSPAAAAKAAA 434

 Score = 35.4 bits (80), Expect = 0.33
 Identities = 33/100 (33%), Positives = 41/100 (41%)
 Frame = +2

Query: 161 LQHTCTRMPMPVAEDTTGAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSS 340
           L +T  ++P  VA     AG  TG G  + AAA         +  AG  P +        
Sbjct: 282 LPYTNGKLPYGVAGAGGKAGYPTGTGVGSQAAAAAAKAAKYGAGGAGVLPGVGGGGIP-- 339

Query: 341 FRFYGAPGAGMGVAICAPSHGPIAAAAAAVAPSAAAY*AA 460
               G  GA  G+   A +  P AAAAA  A  AA Y AA
Sbjct: 340 ----GGAGAIPGIGGIAGAGTPAAAAAAKAAAKAAKYGAA 375

 Score = 31.6 bits (70), Expect = 4.7
 Identities = 41/149 (27%), Positives = 49/149 (32%)
 Frame = +2

Query: 23  PPVGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRMPMPVAE 202
           P VG PG     I      VS AAAA AA       +A+  GA         R  + +  
Sbjct: 405 PGVGGPGIGGPGIVGGPGAVSPAAAAKAAA------KAAKYGA---------RGGVGIPT 449

Query: 203 DTTGAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSSFRFYGAPGAGMGVA 382
              GAGG  G G  A A  G        +           A           PGA  G  
Sbjct: 450 YGVGAGGFPGYGVGAGAGLGGASPAAAAAAAKAAKYGAGGAGALGGLVPGAVPGALPGAV 509

Query: 383 ICAPSHGPIAAAAAAVAPSAAAY*AAACE 469
              P  G +  A    A +AAA   AA +
Sbjct: 510 PAVPGAGGVPGAGTPAAAAAAAAAKAAAK 538

>ref|NP_031951.2| elastin; tropoelastin [Mus musculus] gi|26334767|dbj|BAC31084.1|
           unnamed protein product [Mus musculus]
           gi|30354519|gb|AAH51649.1| Elastin [Mus musculus]
          Length = 860

 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 53/159 (33%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
 Frame = +2

Query: 29  VGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRMPMPVAEDT 208
           VG  G     + A A +  ++ AAAAA A+  +  A  +GA   L        +P A   
Sbjct: 452 VGAGGFPGYGVGAGAGLGGASPAAAAAAAKAAKYGAGGAGALGGLVPGAVPGALPGAVPA 511

Query: 209 T-GAGGATGAGTPATAAAG--------RGLGPTVISTT----AGGHP-RISRANFHSSFR 346
             GAGG  GAGTPA AAA          GLGP V         GG P  +          
Sbjct: 512 VPGAGGVPGAGTPAAAAAAAAAKAAAKAGLGPGVGGVPGGVGVGGIPGGVGVGGVPGGVG 571

Query: 347 FYGAPGAGMGVAICAPSHGPIAAAAAAVAPSAAAY*AAA 463
             G  G G G      +  P AA +AA A + A Y AAA
Sbjct: 572 PGGVTGIGAGPGGLGGAGSPAAAKSAAKAAAKAQYRAAA 610

 Score = 38.9 bits (89), Expect = 0.030
 Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
 Frame = +2

Query: 74  AVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRMP---MPVAEDTTGAGGATGAGTP 244
           A   + AAAAAA A  +  +  A+G          R+P   +P      G GG  G G P
Sbjct: 352 AGAGTPAAAAAAKAAAKAAKYGAAGGLVP-GGPGVRLPGAGIPGVGGIPGVGGIPGVGGP 410

Query: 245 ATAAAGRGLGPTVISTTAGGHPRISRANFHS----SFRFYGA-----PGAGMGVAICAPS 397
                G   GP  +S  A        A + +        YG      PG G+G       
Sbjct: 411 GIGGPGIVGGPGAVSPAAAAKAAAKAAKYGARGGVGIPTYGVGAGGFPGYGVGAGAGLGG 470

Query: 398 HGPIAAAAAAVAPSAAAY*AAA 463
             P AAAAAA A    A  A A
Sbjct: 471 ASPAAAAAAAKAAKYGAGGAGA 492

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 50/153 (32%), Positives = 58/153 (37%), Gaps = 8/153 (5%)
 Frame = +2

Query: 26  PVGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRMPMPVAED 205
           P GV G   +        V S AAAAAA A     +  A GA          +P   A  
Sbjct: 290 PYGVAGAGGKAGYPTGTGVGSQAAAAAAKAA----KYGAGGAGVLPGVGGGGIPGG-AGA 344

Query: 206 TTGAGGATGAGTPATAAAGRGLGPTVISTTAGG------HPRISRANFHSSFRFYGAPGA 367
             G GG  GAGTPA AAA +          AGG        R+  A         G PG 
Sbjct: 345 IPGIGGIAGAGTPAAAAAAKAAAKAAKYGAAGGLVPGGPGVRLPGAGIPG---VGGIPGV 401

Query: 368 GMGVAICAPSHG--PIAAAAAAVAPSAAAY*AA 460
           G    +  P  G   I     AV+P+AAA  AA
Sbjct: 402 GGIPGVGGPGIGGPGIVGGPGAVSPAAAAKAAA 434

 Score = 35.4 bits (80), Expect = 0.33
 Identities = 33/100 (33%), Positives = 41/100 (41%)
 Frame = +2

Query: 161 LQHTCTRMPMPVAEDTTGAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSS 340
           L +T  ++P  VA     AG  TG G  + AAA         +  AG  P +        
Sbjct: 282 LPYTNGKLPYGVAGAGGKAGYPTGTGVGSQAAAAAAKAAKYGAGGAGVLPGVGGGGIP-- 339

Query: 341 FRFYGAPGAGMGVAICAPSHGPIAAAAAAVAPSAAAY*AA 460
               G  GA  G+   A +  P AAAAA  A  AA Y AA
Sbjct: 340 ----GGAGAIPGIGGIAGAGTPAAAAAAKAAAKAAKYGAA 375

 Score = 31.6 bits (70), Expect = 4.7
 Identities = 41/149 (27%), Positives = 49/149 (32%)
 Frame = +2

Query: 23  PPVGVPGTLCRTISAAAAVVSSAAAAAAALAEIEEEEASASGAFATLQHTCTRMPMPVAE 202
           P VG PG     I      VS AAAA AA       +A+  GA         R  + +  
Sbjct: 405 PGVGGPGIGGPGIVGGPGAVSPAAAAKAAA------KAAKYGA---------RGGVGIPT 449

Query: 203 DTTGAGGATGAGTPATAAAGRGLGPTVISTTAGGHPRISRANFHSSFRFYGAPGAGMGVA 382
              GAGG  G G  A A  G        +           A           PGA  G  
Sbjct: 450 YGVGAGGFPGYGVGAGAGLGGASPAAAAAAAKAAKYGAGGAGALGGLVPGAVPGALPGAV 509

Query: 383 ICAPSHGPIAAAAAAVAPSAAAY*AAACE 469
              P  G +  A    A +AAA   AA +
Sbjct: 510 PAVPGAGGVPGAGTPAAAAAAAAAKAAAK 538



EST assemble image


clone accession position
1 LCL083a01_r AV630704 1 470
2 HCL023b11_r AV640838 9 339




Chlamydomonas reinhardtii
Kazusa DNA Research Institute