KCC002359A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002359A_C01 KCC002359A_c01
gccagggcggccataaagaaTGTGCCAACCATAGCAGGTGCCCCTACAACTGATTGTTTG
GCCACCAGAAGCGCTTGGGAAATGTCTTCTCCACCTCCTCGTGTGGGAGCTGGCTCCCTC
GGTGGTGTAGCGTCCGCGGAAAAGAAAACCTCGCCGGGCCCGACTGCAGTCCGCACGAGC
ACGGACAAGCGCTCTATGGAGCTGACGCGTCAGCCCACCATTCTTCGGATGCCATCGCAA
AAGCGGCAGGACTTGTTTGACAGCGAAGAGTTCGACCCCGTCAAGCTTGTCAACACGCTG
TATCCGGATGAGGGCAGCTTGACAGACCTGGACCGATTCATCGTCGTGTTGAAGAAGCAG
ATTCAGTCGGTGGACCAGGAGATCTTCAACGCGGTTCGCTCGCAGGGTGGAGCTCATGCA
CGCTCACGTCAGGACCTGTCCGTGGCGCACGGCCAGATCCAGGAGCTGTTCACCAAGGTG
CGCGACATCCAGCGCAAGAGCGAGGAGAGCGAGGCCATGGTGCAGGAGATC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002359A_C01 KCC002359A_c01
         (531 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK27973.1|AF246287_1 unknown [Homo sapiens]                        73  2e-12
gb|AAL55842.1|AF318335_1 unknown [Homo sapiens]                        73  2e-12
ref|NP_080940.2| RIKEN cDNA 3100002B05 [Mus musculus] gi|2632915...    73  3e-12
dbj|BAC33641.1| unnamed protein product [Mus musculus]                 73  3e-12
gb|AAH34371.1| 3100002B05Rik protein [Mus musculus]                    73  3e-12

>gb|AAK27973.1|AF246287_1 unknown [Homo sapiens]
          Length = 673

 Score = 73.2 bits (178), Expect = 2e-12
 Identities = 38/95 (40%), Positives = 58/95 (61%)
 Frame = +1

Query: 247 QDLFDSEEFDPVKLVNTLYPDEGSLTDLDRFIVVLKKQIQSVDQEIFNAVRSQGGAHARS 426
           QD  D  +F+ V+ +NTL+P E SL ++D  +  ++ +I+ +D  I   VR Q       
Sbjct: 34  QDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDG 93

Query: 427 RQDLSVAHGQIQELFTKVRDIQRKSEESEAMVQEI 531
           RQ L  A   IQ+LF K++DI+ K+E+SE MV+EI
Sbjct: 94  RQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEI 128

>gb|AAL55842.1|AF318335_1 unknown [Homo sapiens]
          Length = 582

 Score = 73.2 bits (178), Expect = 2e-12
 Identities = 38/95 (40%), Positives = 58/95 (61%)
 Frame = +1

Query: 247 QDLFDSEEFDPVKLVNTLYPDEGSLTDLDRFIVVLKKQIQSVDQEIFNAVRSQGGAHARS 426
           QD  D  +F+ V+ +NTL+P E SL ++D  +  ++ +I+ +D  I   VR Q       
Sbjct: 34  QDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDG 93

Query: 427 RQDLSVAHGQIQELFTKVRDIQRKSEESEAMVQEI 531
           RQ L  A   IQ+LF K++DI+ K+E+SE MV+EI
Sbjct: 94  RQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEI 128

>ref|NP_080940.2| RIKEN cDNA 3100002B05 [Mus musculus] gi|26329159|dbj|BAC28318.1|
           unnamed protein product [Mus musculus]
          Length = 832

 Score = 72.8 bits (177), Expect = 3e-12
 Identities = 38/95 (40%), Positives = 58/95 (61%)
 Frame = +1

Query: 247 QDLFDSEEFDPVKLVNTLYPDEGSLTDLDRFIVVLKKQIQSVDQEIFNAVRSQGGAHARS 426
           QD  D  +F+ V+ +NTL+P E SL ++D  +  ++ +I+ +D  I   VR Q       
Sbjct: 34  QDPLDQADFNAVEYINTLFPTEQSLANIDDVVNKIRLKIRRLDDNIRTVVRGQTNVGQDG 93

Query: 427 RQDLSVAHGQIQELFTKVRDIQRKSEESEAMVQEI 531
           RQ L  A   IQ+LF K++DI+ K+E+SE MV+EI
Sbjct: 94  RQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEI 128

>dbj|BAC33641.1| unnamed protein product [Mus musculus]
          Length = 815

 Score = 72.8 bits (177), Expect = 3e-12
 Identities = 38/95 (40%), Positives = 58/95 (61%)
 Frame = +1

Query: 247 QDLFDSEEFDPVKLVNTLYPDEGSLTDLDRFIVVLKKQIQSVDQEIFNAVRSQGGAHARS 426
           QD  D  +F+ V+ +NTL+P E SL ++D  +  ++ +I+ +D  I   VR Q       
Sbjct: 17  QDPLDQADFNAVEYINTLFPTEQSLANIDDVVNKIRLKIRRLDDNIRTVVRGQTNVGQDG 76

Query: 427 RQDLSVAHGQIQELFTKVRDIQRKSEESEAMVQEI 531
           RQ L  A   IQ+LF K++DI+ K+E+SE MV+EI
Sbjct: 77  RQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEI 111

>gb|AAH34371.1| 3100002B05Rik protein [Mus musculus]
          Length = 655

 Score = 72.8 bits (177), Expect = 3e-12
 Identities = 38/95 (40%), Positives = 58/95 (61%)
 Frame = +1

Query: 247 QDLFDSEEFDPVKLVNTLYPDEGSLTDLDRFIVVLKKQIQSVDQEIFNAVRSQGGAHARS 426
           QD  D  +F+ V+ +NTL+P E SL ++D  +  ++ +I+ +D  I   VR Q       
Sbjct: 34  QDPLDQADFNAVEYINTLFPTEQSLANIDDVVNKIRLKIRRLDDNIRTVVRGQTNVGQDG 93

Query: 427 RQDLSVAHGQIQELFTKVRDIQRKSEESEAMVQEI 531
           RQ L  A   IQ+LF K++DI+ K+E+SE MV+EI
Sbjct: 94  RQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEI 128



EST assemble image


clone accession position
1 HCL022c09_r AV640779 1 416
2 MXL068c01_r BP096985 21 469
3 LCL027h10_r AV627518 296 531




Chlamydomonas reinhardtii
Kazusa DNA Research Institute