Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002358A_C01 KCC002358A_c01
(493 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||JQ0984 Ocs-element binding factor 1 - maize 38 0.077
sp|P35314|HSP2_HYLLA Sperm histone P2 precursor (Protamine P2) g... 34 1.1
ref|NP_180012.2| RNA recognition motif (RRM)-containing protein ... 32 3.2
ref|NP_879916.1| putative iron uptake protein [Bordetella pertus... 32 4.2
ref|ZP_00098146.1| COG0243: Anaerobic dehydrogenases, typically ... 32 5.5
>pir||JQ0984 Ocs-element binding factor 1 - maize
Length = 193
Score = 37.7 bits (86), Expect = 0.077
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = -1
Query: 484 SRCCGCAP*ALPSRHPTC*WAPRTAASSVASSCPCP*PLDCSHRYLHTSSEAV 326
+RCC P + P+R P C WAPRT +++ DC H+ H +SEAV
Sbjct: 126 TRCC--VPGSCPTRLPPCPWAPRTCSTTD----------DCLHQPHHHTSEAV 166
>sp|P35314|HSP2_HYLLA Sperm histone P2 precursor (Protamine P2) gi|479290|pir||S33335
protamine P2 - common gibbon gi|296726|emb|CAA50479.1|
Protamine P2 [Hylobates lar]
Length = 102
Score = 33.9 bits (76), Expect = 1.1
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 281 CCKRAKPRVSREQHQNCFRRRVKISM*TIQRLRTRAAAR-YRRRCR 415
C +R R+ R+QH++C RRR + QR R R R RRRCR
Sbjct: 58 CSRRRLHRIHRQQHRSCGRRRRRSCR---QRRRHRRGCRTRRRRCR 100
>ref|NP_180012.2| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 537
Score = 32.3 bits (72), Expect = 3.2
Identities = 21/59 (35%), Positives = 29/59 (48%)
Frame = +3
Query: 192 MARRALDGQRFSRIV*GLFPRASRFYFS*LAASGRSLECQGSSIRTASEDV*RYLCEQS 368
M+R + R I+ + PR + Y L+ L C G S R ASED+ +L EQS
Sbjct: 12 MSRVSESASRLKTIISDMLPRFTDDYSDDLSEYVTVLVCNGKSQRQASEDLEAFLKEQS 70
>ref|NP_879916.1| putative iron uptake protein [Bordetella pertussis]
gi|33597732|ref|NP_885375.1| putative iron uptake
protein [Bordetella parapertussis]
gi|33602580|ref|NP_890140.1| putative iron uptake
protein [Bordetella bronchiseptica]
gi|33571917|emb|CAE41436.1| putative iron uptake protein
[Bordetella pertussis] gi|33574160|emb|CAE38490.1|
putative iron uptake protein [Bordetella parapertussis]
gi|33577022|emb|CAE35578.1| putative iron uptake protein
[Bordetella bronchiseptica]
Length = 102
Score = 32.0 bits (71), Expect = 4.2
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 58 LSSQGATATPNLLKMMRIDSI--SLLVALIAFVCAAPCQGA-RHAWREWLG 201
LSS A L M R+D++ +L+++ + + CA A R+AWR W G
Sbjct: 31 LSSAAAACLAVWLPMRRVDAVVAALMLSFVVYTCAVLWVFATRNAWRAWAG 81
>ref|ZP_00098146.1| COG0243: Anaerobic dehydrogenases, typically
selenocysteine-containing [Desulfitobacterium hafniense]
Length = 677
Score = 31.6 bits (70), Expect = 5.5
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 242 SSYDPGKALSVEGSPSHSRQACRAPWHGAAHTNAIRATKRLIESMRIILRRLG 84
S+ + GK L VEG+P HS R G A+T + + +RL +R R G
Sbjct: 22 STVENGKLLKVEGNPKHSYTRGRLCAKGYAYTEYVYSPRRLKYPLRQFPRGSG 74
