KCC002357A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002357A_C01 KCC002357A_c01
gccacaGAACTCGTGCAGAAGTTTGGACCTTCCAAAGCGAAACTTCTCCCCCAAAGCGGG
CTTCTTCTTTCTTCCACGACTTGGACTGAATTAAACCTCCACGACAAGGATGTCTCTGGA
GGTGCAGTCCAAGTATGACCGGGGGTACCAGGATGAGGGGCAAGGCCTGGTTGAGCTGGG
GACGGCGCACGACGCTGTCCCTAAGACGACAGCACAGCCGAAGTATGGCGACGACGACGA
CCTGCTGCCCGTGGTGCTGGAGCGCTACTTGGAGAAGGCTGGCGTGATGCAGAAGCTGCG
CCCCTACCTGGACCCGTCGGGCCAGGTGAAGAACGAGTTCGCGCGTTGCCTCATGGCAGA
GTTCTTCGGCACGCTGCTGTTTCAGATGTTCGGTGGTTCCGCGCCAGCGAAGGACACCAC
CGCGCCCGCTGCCAACGGTTTCGCGCTGGTGGCTGTGATCTACGCCTTTGGCCACATCTC
GGGCGCCCACATCAAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002357A_C01 KCC002357A_c01
         (496 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAC82365.1| unknown [Myxococcus xanthus]                            52  4e-06
sp|Q06019|MIP_RANPI Lens fiber major intrinsic protein (MIP26) (...    48  8e-05
pir||JN0557 lens fiber membrane major intrinsic protein - Africa...    48  8e-05
gb|AAB30268.1| hAQP-CD=collecting duct aquaporin [human, kidney,...    46  2e-04
sp|P79164|AQP2_DASNO Aquaporin-CD (AQP-CD) (Water channel protei...    46  2e-04

>gb|AAC82365.1| unknown [Myxococcus xanthus]
          Length = 542

 Score = 52.0 bits (123), Expect = 4e-06
 Identities = 48/137 (35%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
 Frame = -3

Query: 479 RCGQRRRSQP---------PARNRWQRARWCPSLARNHRTSETAACRR-TLP*GNARTRS 330
           RCG  R+S P         P R R + +   PS  R   T+  ++C     P G  R  S
Sbjct: 106 RCGPPRKSTPTRCCTPCPAPPRCRARPSAPAPSAGRTCPTAGPSSCASGCCPTG--RCGS 163

Query: 329 SPGPTGPGRGAASASRQPSPSSAPAPRAAGRRRRHTSAVLSS*GQRRAPS-PAQPGLAPH 153
           +PGPT  G   +  S+ PSP+ A    + GRRR H     +S     AP+    P     
Sbjct: 164 APGPTPHGAEPSPPSQSPSPAPA---SSGGRRRTHPRPARASAAGATAPACLPPPRCCGR 220

Query: 152 PGTPGHTWTAPPETSLS 102
           PGT G   TAPP TS S
Sbjct: 221 PGT-GCARTAPPSTSAS 236

>sp|Q06019|MIP_RANPI Lens fiber major intrinsic protein (MIP26) (MP26)
          Length = 263

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 25/60 (41%), Positives = 32/60 (52%), Gaps = 7/60 (11%)
 Frame = +2

Query: 338 FARCLMAEFFGTLLFQMFGGSAPAKDTTAPA-------ANGFALVAVIYAFGHISGAHIN 496
           F R + AEFFGT+ +  FG  A  K    PA       A G  L  ++ + GH+SGAHIN
Sbjct: 9   FWRAVFAEFFGTMFYVFFGLGASLKWAAGPANVLVIALAFGLVLATMVQSIGHVSGAHIN 68

>pir||JN0557 lens fiber membrane major intrinsic protein - African clawed frog
           gi|288515|emb|CAA40291.1| lens major intrinsic protein
           (MIP-26) [Rana pipiens]
          Length = 262

 Score = 47.8 bits (112), Expect = 8e-05
 Identities = 25/60 (41%), Positives = 32/60 (52%), Gaps = 7/60 (11%)
 Frame = +2

Query: 338 FARCLMAEFFGTLLFQMFGGSAPAKDTTAPA-------ANGFALVAVIYAFGHISGAHIN 496
           F R + AEFFGT+ +  FG  A  K    PA       A G  L  ++ + GH+SGAHIN
Sbjct: 8   FWRAVFAEFFGTMFYVFFGLGASLKWAAGPANVLVIALAFGLVLATMVQSIGHVSGAHIN 67

>gb|AAB30268.1| hAQP-CD=collecting duct aquaporin [human, kidney, Peptide, 271 aa]
          Length = 271

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = +2

Query: 338 FARCLMAEFFGTLLFQMFGGSAPAKDTTAPA-------ANGFALVAVIYAFGHISGAHIN 496
           F+R + AEF  TLLF  FG  +     TAP        A G  +  ++ A GHISGAHIN
Sbjct: 9   FSRAVFAEFLATLLFVFFGLGSALNWATAPPSVLQIAMAFGLGIGTLVQALGHISGAHIN 68

>sp|P79164|AQP2_DASNO Aquaporin-CD (AQP-CD) (Water channel protein for renal collecting
           duct) (ADH water channel) (Aquaporin 2) (Collecting duct
           water channel protein) (WCH-CD)
           gi|1805745|emb|CAA71662.1| aquaporin 2 [Dasypus
           novemcinctus]
          Length = 109

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 26/60 (43%), Positives = 36/60 (59%), Gaps = 7/60 (11%)
 Frame = +2

Query: 338 FARCLMAEFFGTLLFQMFG-GSAPAKDTTAPA------ANGFALVAVIYAFGHISGAHIN 496
           F+R ++AEF  TL+F  FG GSA +     P+      A G A+  ++ A GH+SGAHIN
Sbjct: 4   FSRAVLAEFLATLIFVFFGLGSALSWPQALPSVLQIALAFGLAIGTLVQALGHVSGAHIN 63



EST assemble image


clone accession position
1 LC089b04_r AV625194 1 485
2 HCL064d08_r AV643137 7 496
3 HCL022a10_r AV640768 32 392




Chlamydomonas reinhardtii
Kazusa DNA Research Institute