KCC002351A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002351A_C01 KCC002351A_c01
ctactCTTGACCATGACATCATAATTATGCGTATCTGACCACACACCGACGCCTACAGTC
GCGCGAAAGAAGTCACATCGTCGCGTGCACACTCGGGCAGCATGGCGAAGCCTGTGAAGG
CTGCGCAGCCTGCTAAGGGTGGCAAAACTTTTGCAAAGCAGAGCCCCGGCACTAAGCGGA
AAGGCGAGGCGGCGCCCGCTGGCGGCGCCGCGCGGCCGGCGAAGAAGTTCCGGGCGGAAA
ATGGCAAGCCGAAGGCGTCGGAGCCACTGAAGAAGCTATCATCGAAGGAGAAACGCGCCA
CCATCCGCGAGAAGAAGCTGGCGCACAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002351A_C01 KCC002351A_c01
         (329 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK29456.1|AF352253_1 histone H1 [Lens culinaris]                   47  7e-05
gb|AAP31307.1| histone H1 [Lens nigricans]                             47  7e-05
gb|AAK29455.1|AF352252_1 histone H1 [Lens culinaris]                   47  7e-05
gb|AAK29454.1|AF352251_1 histone H1 [Lens culinaris]                   47  7e-05
gb|AAK29453.1|AF352250_1 histone H1 [Lathyrus sativus]                 45  4e-04

>gb|AAK29456.1|AF352253_1 histone H1 [Lens culinaris]
          Length = 293

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 31/83 (37%), Positives = 41/83 (49%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGAARP 218
           P   A   AK   +++A   + AKP  AA+PAK  +T  + SPGT R     PA   A P
Sbjct: 210 PAAKAKPAAKAKPAAKAKPAAKAKP--AAKPAKAARTSTRTSPGT-RAAAPKPAAKKAAP 266

Query: 219 AKKFRAENGKPKASEPLKKLSSK 287
           AKK   +     A  P KK ++K
Sbjct: 267 AKKAPVKAAAKTAKSPAKKAAAK 289

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 33/96 (34%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +3

Query: 51  AYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRK--GEAAPAGGAARPAK 224
           A  +AK    S+A   + AKP   A+PA   K  AK  P  K K   +A PA   A  AK
Sbjct: 142 AKPKAKPAAKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKTAAVAK 201

Query: 225 KFRAENGKPKA-SEPLKKLSSKEKRATIREKKLAHK 329
              A   KP A ++P  K     K     + K A K
Sbjct: 202 AKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 237

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 36/104 (34%), Positives = 43/104 (40%), Gaps = 7/104 (6%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGA--- 209
           P   A   AK    ++A   + AKP   A+PA   K  AK  P  K K  A PA  A   
Sbjct: 186 PAAKAKPAAKTAAVAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKAARTS 245

Query: 210 ARPAKKFRAENGKP--KASEPLKKLSSKEKRATIRE--KKLAHK 329
            R +   RA   KP  K + P KK   K    T +   KK A K
Sbjct: 246 TRTSPGTRAAAPKPAAKKAAPAKKAPVKAAAKTAKSPAKKAAAK 289

 Score = 38.1 bits (87), Expect = 0.033
 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +3

Query: 51  AYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRK--GEAAPAGGAARPAK 224
           A S+ K    ++  + S AKP   A+PA   K  AK  P  K K   +A PA  A   AK
Sbjct: 136 AASKPKAKPKAKPAAKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 195

Query: 225 KFRAENGKPKA-SEPLKKLSSKEKRATIREKKLAHK 329
                  KP A ++P  K     K     + K A K
Sbjct: 196 TAAVAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 231

 Score = 36.6 bits (83), Expect = 0.095
 Identities = 29/92 (31%), Positives = 38/92 (40%), Gaps = 2/92 (2%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRK--GEAAPAGGAA 212
           P   A   AK   +++A   + AKP   A+PA   K  AK +   K K   +A PA  A 
Sbjct: 156 PAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKTAAVAKAKPAAKAKPAAKAK 215

Query: 213 RPAKKFRAENGKPKASEPLKKLSSKEKRATIR 308
             AK   A   KP A        +K  R + R
Sbjct: 216 PAAKAKPAAKAKPAAKAKPAAKPAKAARTSTR 247

>gb|AAP31307.1| histone H1 [Lens nigricans]
          Length = 293

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
 Frame = +3

Query: 24  IMRI*PHTDAYSRAKEVTSSRAHSGSMAKPVK----AAQPAKGGKTFAKQSPGTKRKGEA 191
           + ++ P   A   AK   +++A   + AKP      AA+PAK  +T  + SPGT R    
Sbjct: 199 VAKVKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKLAAKPAKAARTSTRTSPGT-RAAAP 257

Query: 192 APAGGAARPAKKFRAENGKPKASEPLKKLSSK 287
            PA   A PAKK   +     A  P KK ++K
Sbjct: 258 KPAAKKAAPAKKAPVKAAAKTAKSPAKKAAAK 289

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +3

Query: 51  AYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRK--GEAAPAGGAARPAK 224
           A  +AK     +A   + AKPV  A+P    K   K  P  K K   +A PA   A  AK
Sbjct: 142 AKPKAKPAAKLKAKPAAKAKPVAKAKPVAKAKPAVKAKPAAKAKPAAKAKPAAKTAAVAK 201

Query: 225 KFRAENGKPKA-SEPLKKLSSKEKRATIREKKLAHK 329
              A   KP A ++P  K     K     + KLA K
Sbjct: 202 VKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKLAAK 237

 Score = 39.3 bits (90), Expect = 0.015
 Identities = 35/104 (33%), Positives = 42/104 (39%), Gaps = 7/104 (6%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGA--- 209
           P   A   AK    ++    + AKP   A+PA   K  AK  P  K K  A PA  A   
Sbjct: 186 PAAKAKPAAKTAAVAKVKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKLAAKPAKAARTS 245

Query: 210 ARPAKKFRAENGKP--KASEPLKKLSSKEKRATIRE--KKLAHK 329
            R +   RA   KP  K + P KK   K    T +   KK A K
Sbjct: 246 TRTSPGTRAAAPKPAAKKAAPAKKAPVKAAAKTAKSPAKKAAAK 289

>gb|AAK29455.1|AF352252_1 histone H1 [Lens culinaris]
          Length = 293

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 31/83 (37%), Positives = 41/83 (49%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGAARP 218
           P   A   AK   +++A   + AKP  AA+PAK  +T  + SPGT R     PA   A P
Sbjct: 210 PAAKAKPAAKAKPAAKAKPAAKAKP--AAKPAKAARTSTRTSPGT-RAAAPKPAAKKAAP 266

Query: 219 AKKFRAENGKPKASEPLKKLSSK 287
           AKK   +     A  P KK ++K
Sbjct: 267 AKKAPVKAAAKTAKSPAKKAAAK 289

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 36/104 (34%), Positives = 43/104 (40%), Gaps = 7/104 (6%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGA--- 209
           P   A   AK    ++A   + AKP   A+PA   K  AK  P  K K  A PA  A   
Sbjct: 186 PAAKAKPAAKTAAVAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKAARTS 245

Query: 210 ARPAKKFRAENGKP--KASEPLKKLSSKEKRATIRE--KKLAHK 329
            R +   RA   KP  K + P KK   K    T +   KK A K
Sbjct: 246 TRTSPGTRAAAPKPAAKKAAPAKKAPVKAAAKTAKSPAKKAAAK 289

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +3

Query: 51  AYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKR--KGEAAPAGGAARPAK 224
           A  +AK    S+A   + AKP   A+PA   K  AK  P  K     +A PA   A  AK
Sbjct: 142 AKPKAKPAAKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKSMPAAKAKPAAKTAAVAK 201

Query: 225 KFRAENGKPKA-SEPLKKLSSKEKRATIREKKLAHK 329
              A   KP A ++P  K     K     + K A K
Sbjct: 202 AKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 237

 Score = 37.0 bits (84), Expect = 0.073
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +3

Query: 51  AYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRK--GEAAPAGGAARPAK 224
           A S+ K    ++  + S AKP   A+PA   K  AK  P  K K   ++ PA  A   AK
Sbjct: 136 AASKPKAKPKAKPAAKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKSMPAAKAKPAAK 195

Query: 225 KFRAENGKPKA-SEPLKKLSSKEKRATIREKKLAHK 329
                  KP A ++P  K     K     + K A K
Sbjct: 196 TAAVAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 231

>gb|AAK29454.1|AF352251_1 histone H1 [Lens culinaris]
          Length = 281

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 31/83 (37%), Positives = 41/83 (49%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGAARP 218
           P   A   AK   +++A   + AKP  AA+PAK  +T  + SPGT R     PA   A P
Sbjct: 198 PAAKAKPAAKAKPAAKAKPAAKAKP--AAKPAKAARTSTRTSPGT-RAAAPKPAAKKAAP 254

Query: 219 AKKFRAENGKPKASEPLKKLSSK 287
           AKK   +     A  P KK ++K
Sbjct: 255 AKKAPVKAAAKTAKSPAKKAAAK 277

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 31/95 (32%), Positives = 45/95 (46%), Gaps = 5/95 (5%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGAARP 218
           P   A   AK   +++A   + AKP   A+PA   K  AK  P  K K  AA A  AA+P
Sbjct: 168 PAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAK-PAAKAKPAAKP 226

Query: 219 AKKFR-----AENGKPKASEPLKKLSSKEKRATIR 308
           AK  R     +   +  A +P  K ++  K+A ++
Sbjct: 227 AKAARTSTRTSPGTRAAAPKPAAKKAAPAKKAPVK 261

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 36/104 (34%), Positives = 44/104 (41%), Gaps = 7/104 (6%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGA--- 209
           P   A   AK   +++A   + AKP   A+PA   K  AK  P  K K  A PA  A   
Sbjct: 174 PAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKAARTS 233

Query: 210 ARPAKKFRAENGKP--KASEPLKKLSSKEKRATIRE--KKLAHK 329
            R +   RA   KP  K + P KK   K    T +   KK A K
Sbjct: 234 TRTSPGTRAAAPKPAAKKAAPAKKAPVKAAAKTAKSPAKKAAAK 277

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +3

Query: 51  AYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRK--GEAAPAGGAARPAK 224
           A  +AK    S+A   + AKP   A+PA   K  AK  P  K K   +A PA  A   AK
Sbjct: 142 AKPKAKPAAKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 201

Query: 225 KFRAENGKPKA-SEPLKKLSSKEKRA 299
              A   KP A ++P  K     K A
Sbjct: 202 AKPAAKAKPAAKAKPAAKAKPAAKPA 227

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 28/92 (30%), Positives = 39/92 (41%), Gaps = 2/92 (2%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRK--GEAAPAGGAA 212
           P     +++K   +++A   + AKP   A+PA   K  AK  P  K K   +A PA  A 
Sbjct: 144 PKAKPAAKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAK 203

Query: 213 RPAKKFRAENGKPKASEPLKKLSSKEKRATIR 308
             AK   A   KP A        +K  R + R
Sbjct: 204 PAAKAKPAAKAKPAAKAKPAAKPAKAARTSTR 235

 Score = 37.4 bits (85), Expect = 0.056
 Identities = 29/84 (34%), Positives = 37/84 (43%), Gaps = 3/84 (3%)
 Frame = +3

Query: 51  AYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRK--GEAAPAGGAARPAK 224
           A S+ K    ++  + S AKP   A+PA   K  AK  P  K K   +A PA  A   AK
Sbjct: 136 AASKPKAKPKAKPAAKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 195

Query: 225 KFRAENGKPKA-SEPLKKLSSKEK 293
              A   KP A ++P  K     K
Sbjct: 196 AKPAAKAKPAAKAKPAAKAKPAAK 219

>gb|AAK29453.1|AF352250_1 histone H1 [Lathyrus sativus]
          Length = 306

 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 31/83 (37%), Positives = 39/83 (46%)
 Frame = +3

Query: 51  AYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGAARPAKKF 230
           A  +AK  T S+A   + AKP   A+PA   K  AK  P  K K  AA A  AA+PAK  
Sbjct: 153 AKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAK-PAAKAKPAAKPAKTV 211

Query: 231 RAENGKPKASEPLKKLSSKEKRA 299
            A+           K ++K K A
Sbjct: 212 AAKPAAKAKPAAKPKAAAKAKPA 234

 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGG-AAR 215
           P   A +++K   +++A   + AKP   A+PA   K  AK  P  K K  A PA   AA+
Sbjct: 155 PKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKTVAAK 214

Query: 216 PAKKFRAENGKPKASEPLKKLSSKEKRA 299
           PA K +    KPKA+   K  +  +  A
Sbjct: 215 PAAKAKPA-AKPKAAAKAKPAAKAKPAA 241

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +3

Query: 51  AYSRAKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRK--GEAAPAGGAARPAK 224
           A S++K    ++A + S AKP   A+PA   K  AK  P  K K   +A PA  A   AK
Sbjct: 147 AASKSKAKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 206

Query: 225 KFRAENGKPKA-SEPLKKLSSKEKRATIREKKLAHK 329
             +    KP A ++P  K  +  K     + K A K
Sbjct: 207 PAKTVAAKPAAKAKPAAKPKAAAKAKPAAKAKPAAK 242

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVK----AAQPAKGGKTFAKQSPGTKRKGEAAPAGG 206
           P   A   AK   +++A   + AKP      AA+PAK  +T  + SP  K      PA  
Sbjct: 215 PAAKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRTSPAAK-AAAPKPAVK 273

Query: 207 AARPAKK--FRAENGKPKASEPLKKLSSK 287
            A P KK   +A      A  P KK ++K
Sbjct: 274 KAAPVKKTPVKAAAKAKTAKSPAKKAAAK 302

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 27/89 (30%), Positives = 40/89 (44%)
 Frame = +3

Query: 63  AKEVTSSRAHSGSMAKPVKAAQPAKGGKTFAKQSPGTKRKGEAAPAGGAARPAKKFRAEN 242
           AK   +++  + + AKP   A+PA   K  AK +   +     +PA  AA P  K   + 
Sbjct: 217 AKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRTSPAAKAAAP--KPAVKK 274

Query: 243 GKPKASEPLKKLSSKEKRATIREKKLAHK 329
             P    P+ K ++K K A    KK A K
Sbjct: 275 AAPVKKTPV-KAAAKAKTAKSPAKKAAAK 302

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +3

Query: 39  PHTDAYSRAKEVTSSRAHSGSMAKPVKAAQP-AKGGKTFAKQSPGTKRKGEAAP-AGGAA 212
           P   A   AK   +++A   + AKP   A+P AK  KT A + P  K K  A P A   A
Sbjct: 173 PAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPAKTVAAK-PAAKAKPAAKPKAAAKA 231

Query: 213 RPAKKFRAENGKPKASEPLK 272
           +PA K +       A++P K
Sbjct: 232 KPAAKAKPAAKAKPAAKPAK 251



EST assemble image


clone accession position
1 MXL009g12_r BP093539 1 272
2 HCL020h11_r AV640701 6 329




Chlamydomonas reinhardtii
Kazusa DNA Research Institute