KCC002331A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002331A_C01 KCC002331A_c01
acacctcttttagtggtcatatacataagactttACCAGAGCACAGCAACGATGGGCGCT
GGGTGCTCGCGAACCGTGCATGCCGAGCCGGCTAACGTAGCGCCAATTGTACAAGCGAAG
TCTGTGCCCAAGGGCAGTGACGAATCCACGCCATGGGTGCCAGAAAAGAAAGTGGTGGAG
AAGGAAGCCCCCGAGGAGTCCAATGTGGTCGTAGTTGTGGCGCCAGCGTCGCGTACCCAG
TCGAGGAAGGCTCCCGAAGAGACGACCGCATATGGAGGCAGCACGCGCAAGCTGACGATT
CTCCACTTCAACGACGTATATAATATTGAGCCACAGGATCGTGAGCCTAAAGGTGGAGCA
GCGCGCCTATGCGCCAAGGTCAAGGAGTTCCGCGCCAACGGCAGCAACCCGCTTGTCCTC
TTCTCTGGCGACGCCTATAACCCGTCGCTGATGTCCACCATCACACTGGGGAAGCAAATG
CCGCCCGTGCTGAACGAGATTGGCGTAAACGTTTCCTGCGTTGGGAACCACGACTTTGAT
TACGGTCTGGAGAACATGATGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002331A_C01 KCC002331A_c01
         (562 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_080027.1| RIKEN cDNA 4933425L06 [Mus musculus] gi|1285590...   107  1e-22
ref|NP_610598.1| CG11883-PB [Drosophila melanogaster] gi|7303719...   107  1e-22
ref|NP_724960.1| CG11883-PA [Drosophila melanogaster] gi|7303718...   107  1e-22
dbj|BAB30414.1| unnamed protein product [Mus musculus]                106  2e-22
ref|XP_328296.1| hypothetical protein [Neurospora crassa] gi|289...    91  1e-17

>ref|NP_080027.1| RIKEN cDNA 4933425L06 [Mus musculus] gi|12855908|dbj|BAB30497.1|
           unnamed protein product [Mus musculus]
          Length = 585

 Score =  107 bits (266), Expect = 1e-22
 Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
 Frame = +1

Query: 184 EAPEESNVVVVVAPASRTQSRKAPEETTAYGGS--TRKLTILHFNDVYNIEPQDREPKGG 357
           EAPEE    +     ++     +P+      G   +  LTILHFNDVY+++    EP GG
Sbjct: 2   EAPEEEPPALAPPQPAKLGEELSPQTQGNQSGDMDSYNLTILHFNDVYDVDSSTEEPVGG 61

Query: 358 AARLCAKVKEFRANGSNPLVLFSGDAYNPSLMSTITLGKQMPPVLNEIGVNVSCVGNHDF 537
           AAR    VK F     NPL++FSGD  NPS++STIT GK M  +LNE+GV+ +  GNH+F
Sbjct: 62  AARFATAVKRFSI--LNPLLIFSGDCLNPSILSTITKGKHMISILNELGVHFAVFGNHEF 119

Query: 538 DYGLE 552
           D+G++
Sbjct: 120 DFGVD 124

>ref|NP_610598.1| CG11883-PB [Drosophila melanogaster] gi|7303719|gb|AAF58768.1|
           CG11883-PB [Drosophila melanogaster]
           gi|17862642|gb|AAL39798.1| LD42374p [Drosophila
           melanogaster]
          Length = 713

 Score =  107 bits (266), Expect = 1e-22
 Identities = 53/93 (56%), Positives = 67/93 (71%), Gaps = 1/93 (1%)
 Frame = +1

Query: 277 GSTRKLTILHFNDVYNIEPQ-DREPKGGAARLCAKVKEFRANGSNPLVLFSGDAYNPSLM 453
           G  + LTILH+NDVYNIE   + EP GGAAR    +K F     NPLVLFSGDA++PS++
Sbjct: 132 GEDKPLTILHYNDVYNIESMAETEPVGGAARFATAIKSFAH--LNPLVLFSGDAFSPSML 189

Query: 454 STITLGKQMPPVLNEIGVNVSCVGNHDFDYGLE 552
           ST T G+QM PVLN +G + +  GNHDFD+GL+
Sbjct: 190 STFTQGEQMIPVLNTVGTHCAVFGNHDFDHGLD 222

>ref|NP_724960.1| CG11883-PA [Drosophila melanogaster] gi|7303718|gb|AAF58767.1|
           CG11883-PA [Drosophila melanogaster]
          Length = 732

 Score =  107 bits (266), Expect = 1e-22
 Identities = 53/93 (56%), Positives = 67/93 (71%), Gaps = 1/93 (1%)
 Frame = +1

Query: 277 GSTRKLTILHFNDVYNIEPQ-DREPKGGAARLCAKVKEFRANGSNPLVLFSGDAYNPSLM 453
           G  + LTILH+NDVYNIE   + EP GGAAR    +K F     NPLVLFSGDA++PS++
Sbjct: 132 GEDKPLTILHYNDVYNIESMAETEPVGGAARFATAIKSFAH--LNPLVLFSGDAFSPSML 189

Query: 454 STITLGKQMPPVLNEIGVNVSCVGNHDFDYGLE 552
           ST T G+QM PVLN +G + +  GNHDFD+GL+
Sbjct: 190 STFTQGEQMIPVLNTVGTHCAVFGNHDFDHGLD 222

>dbj|BAB30414.1| unnamed protein product [Mus musculus]
          Length = 585

 Score =  106 bits (265), Expect = 2e-22
 Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
 Frame = +1

Query: 184 EAPEESNVVVVVAPASRTQSRKAPEETTAYGGS--TRKLTILHFNDVYNIEPQDREPKGG 357
           EAPEE    +     +      +P+      G   +  LTILHFNDVY+++    EP GG
Sbjct: 2   EAPEEEPPALAPPQPANVGEELSPQTQGNQSGDMDSYNLTILHFNDVYDVDSSTEEPVGG 61

Query: 358 AARLCAKVKEFRANGSNPLVLFSGDAYNPSLMSTITLGKQMPPVLNEIGVNVSCVGNHDF 537
           AAR    VK F     NPL++FSGD  NPS++STIT GK M  +LNE+GV+ +  GNH+F
Sbjct: 62  AARFATAVKRFSI--LNPLLIFSGDCLNPSILSTITKGKHMISILNELGVHFAVFGNHEF 119

Query: 538 DYGLE 552
           D+G++
Sbjct: 120 DFGVD 124

>ref|XP_328296.1| hypothetical protein [Neurospora crassa] gi|28924616|gb|EAA33734.1|
           hypothetical protein [Neurospora crassa]
          Length = 710

 Score = 90.9 bits (224), Expect = 1e-17
 Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 7/91 (7%)
 Frame = +1

Query: 298 ILHFNDVYNIEPQDREPKGGAARLCAKVKEFR------ANGSNPLV-LFSGDAYNPSLMS 456
           +LHFNDVY+++    EP GG +R    V E+R        G   LV LFSGD +NPSL S
Sbjct: 41  LLHFNDVYHLDASSAEPVGGISRFMTAVNEYRNDERYQGQGKPELVTLFSGDVFNPSLES 100

Query: 457 TITLGKQMPPVLNEIGVNVSCVGNHDFDYGL 549
           ++T G  M P+LN+IG   +CVGNHD D+G+
Sbjct: 101 SVTKGSHMVPILNKIGTQCACVGNHDLDFGV 131



EST assemble image


clone accession position
1 HCL037a08_r AV641595 1 528
2 HCL018b07_r AV640549 35 562




Chlamydomonas reinhardtii
Kazusa DNA Research Institute