Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002327A_C01 KCC002327A_c01
(563 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar... 40 0.017
gb|AAK92560.1|AC051624_18 Putative retroelement [Oryza sativa] g... 39 0.049
gb|AAK92588.1|AC074354_22 Putative retroelement [Oryza sativa] g... 39 0.049
ref|NP_564554.1| polyadenylate-binding protein (PABP), putative ... 39 0.063
dbj|BAB70804.1| unnamed protein product [Homo sapiens] 39 0.063
>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar-group)]
Length = 1827
Score = 40.4 bits (93), Expect = 0.017
Identities = 41/137 (29%), Positives = 56/137 (39%), Gaps = 11/137 (8%)
Frame = -2
Query: 562 ACAPAQHPA--CGSPPAAAAAPRASSRCCCCRCCRRCGRCYCRGRSPAQGHAS------- 410
A APA PA PA+AA AS C G Y R S A G S
Sbjct: 274 APAPAPTPAFTLSFAPASAARGSASGTGGCL-----FGMVYTRTGSRATGEGSNGEERAD 328
Query: 409 --HPH**AGSDGPCPGQSPRSPAVCRCRQEEAQMTRLTPSTRQRRREHGELHS*SRPRPY 236
HP+ G G P P +P + + + QM + +Q +++H ++H R +
Sbjct: 329 GVHPN---GDSGNGPPPLPENPTLAQVMAHQTQM--MAAMMQQMQQQHQQMH--QRMMQH 381
Query: 235 ASRQRWSPRPPPPWSCL 185
A +Q PPPP S L
Sbjct: 382 AEQQHQQFGPPPPQSKL 398
>gb|AAK92560.1|AC051624_18 Putative retroelement [Oryza sativa] gi|31431025|gb|AAP52863.1|
putative retroelement [Oryza sativa (japonica
cultivar-group)]
Length = 1714
Score = 38.9 bits (89), Expect = 0.049
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Frame = -2
Query: 556 APAQHPA--CGSPPAAAAAPRASSRCCCCRCCRRCGRCYCRGRSPAQGHAS--------- 410
APA PA PA+AA AS C G Y R S A G S
Sbjct: 163 APAPAPAFTLSFAPASAARGSASGTGGCL-----FGMVYTRNGSRATGEGSNGEERADGV 217
Query: 409 HPH**AGSDGPCPGQSPRSPAVCRCRQEEAQMTRLTPSTRQRRREHGELHS*SRPRPYAS 230
HP+ +G+ GP P P +P + + + QM + +Q +++H ++H R +A
Sbjct: 218 HPNSDSGN-GPPP--LPENPTLAQVMAHQTQM--IAAMMQQMQQQHQQMH--QRMMQHAE 270
Query: 229 RQRWSPRPPPPWSCL 185
+Q PPPP S L
Sbjct: 271 QQHQQFGPPPPQSKL 285
>gb|AAK92588.1|AC074354_22 Putative retroelement [Oryza sativa]
gi|19881702|gb|AAM01103.1|AC098682_7 Putative
retroelement [Oryza sativa] gi|31431123|gb|AAP52945.1|
putative retroelement [Oryza sativa (japonica
cultivar-group)]
Length = 1777
Score = 38.9 bits (89), Expect = 0.049
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Frame = -2
Query: 556 APAQHPA--CGSPPAAAAAPRASSRCCCCRCCRRCGRCYCRGRSPAQGHAS--------- 410
APA PA PA+AA AS C G Y R S A G S
Sbjct: 226 APAPAPAFTLSFAPASAARGSASGTGGCL-----FGMVYTRNGSRATGEGSNGEERADGV 280
Query: 409 HPH**AGSDGPCPGQSPRSPAVCRCRQEEAQMTRLTPSTRQRRREHGELHS*SRPRPYAS 230
HP+ +G+ GP P P +P + + + QM + +Q +++H ++H R +A
Sbjct: 281 HPNSDSGN-GPPP--LPENPTLAQVMAHQTQM--MAAMMQQMQQQHQQMH--QRMMQHAE 333
Query: 229 RQRWSPRPPPPWSCL 185
+Q PPPP S L
Sbjct: 334 QQHQQFGPPPPQSKL 348
>ref|NP_564554.1| polyadenylate-binding protein (PABP), putative [Arabidopsis
thaliana] gi|25294313|pir||C96534 probable Poly-A
Binding Protein [imported] - Arabidopsis thaliana
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A
Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A
Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding
Protein [Arabidopsis thaliana]
Length = 671
Score = 38.5 bits (88), Expect = 0.063
Identities = 24/55 (43%), Positives = 32/55 (57%), Gaps = 3/55 (5%)
Frame = -3
Query: 534 AEVRRQRQPP---LALPAAAAAAAAAAAAGGATAGADLQHRGTPVIHTDRRGATV 379
A+++ Q Q +A+P AAAA AAAAAAG A A A +GT ++ ATV
Sbjct: 2 AQIQHQGQNANGGVAVPGAAAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATV 56
>dbj|BAB70804.1| unnamed protein product [Homo sapiens]
Length = 168
Score = 38.5 bits (88), Expect = 0.063
Identities = 40/106 (37%), Positives = 47/106 (43%), Gaps = 3/106 (2%)
Frame = -2
Query: 439 GRSPAQGHASHPH**AGSDGPCPGQSPRSPAVCRCRQ-EEAQMTRLTPSTRQRRREHGEL 263
G PAQG A HP S GP P + PRS +CR +Q E + L TRQ GE
Sbjct: 57 GAPPAQGPAQHP----WSRGP-PRRPPRSVKLCRAQQWPETRADPLPAGTRQ-----GES 106
Query: 262 HS*SRPRPYASRQRWSPR--PPPPWSCL*SRSAAGECRGLTAAGRS 131
RP + R SPR P PW+ R+ L AA RS
Sbjct: 107 PLPRGRRPDLGQGRPSPRRLPRGPWT---HRTRTRVRGSLRAAARS 149
