KCC002322A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002322A_C01 KCC002322A_c01
cttcatcaaTCATACATCACGTCGATTCTCTCGTCAATTTCCTTTGCACACTTTGTGCCG
GTTGTCCCGGCACGCGATTGATTACAATAGGCAGCGCGTGCACCGCGCTTATGTCCAAAC
GCACTGCTGACGGCAGCACCGAGACCCCGTCAGCTAAGAAGACAGCCACGACCATGAGCG
CCAAGGGCGGGGCGGCTGACGGGGCTCATGTGGAGATCGATGAGAACCTTCACTCCCGCC
AGCTGGCCGTTTACGGCCGCGAGGCCATGAAGAGAATGGCCACGTCGAGCGTGCTGATTT
GTGGAGCGAATGGCCTTGGCGTGGAAGTTGCCAAGAACGTCATCCTGGCGGGCGTGCGCG
GTGTGACGGTGCACGACACCGCCAAGGTGGCGCTCACCGACCTTTCCGCGCAGTTCTACC
TGACCGAGCAGGACGTGGGCCGCAACCGCGCGGAGGCTTGCCGCGAGAAGCTGCAGGAGC
TGAACACGGGTGTGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002322A_C01 KCC002322A_c01
         (496 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC75563.1| putative ubiquitin-activating enzyme [Oryza sati...   130  7e-30
sp|P31252|UBA3_WHEAT Ubiquitin-activating enzyme E1 3 gi|7437981...   129  3e-29
sp|P20973|UBA1_WHEAT Ubiquitin-activating enzyme E1 1 gi|100841|...   128  3e-29
sp|P31251|UBA2_WHEAT Ubiquitin-activating enzyme E1 2 gi|170684|...   125  2e-28
dbj|BAB19357.1| ubiquitin activating enzyme [Xenopus laevis]          124  6e-28

>dbj|BAC75563.1| putative ubiquitin-activating enzyme [Oryza sativa (japonica
           cultivar-group)]
          Length = 1045

 Score =  130 bits (328), Expect = 7e-30
 Identities = 69/128 (53%), Positives = 88/128 (67%), Gaps = 1/128 (0%)
 Frame = +3

Query: 114 SKRTADGSTETPSAKKTATTMSAKGGAADGAHV-EIDENLHSRQLAVYGREAMKRMATSS 290
           +KR A    + P+  K      A+ G+ +G  V EIDE+LHSRQLAVYGRE M+R+  S 
Sbjct: 5   NKRAAGTDDDRPTDPKRPKV--AQNGSTNGVVVPEIDEDLHSRQLAVYGRETMRRLFASH 62

Query: 291 VLICGANGLGVEVAKNVILAGVRGVTVHDTAKVALTDLSAQFYLTEQDVGRNRAEACREK 470
           VL+ G NGLG E+AKN+ LAGV+ VT+HD   V + DLSA F+L+E D+G+NRA AC  K
Sbjct: 63  VLVSGLNGLGAEIAKNLALAGVKSVTLHDVKNVEMWDLSANFFLSENDIGKNRAAACVSK 122

Query: 471 LQELNTGV 494
           LQELN  V
Sbjct: 123 LQELNNAV 130

 Score = 40.0 bits (92), Expect = 0.016
 Identities = 21/101 (20%), Positives = 48/101 (46%), Gaps = 5/101 (4%)
 Frame = +3

Query: 198 DGAHVEIDENLHSRQLAVYGREAMKRMATSSVLICGANGLGVEVAKNVILAGVR-----G 362
           D   ++   + +  Q++V+G +  K++  ++  + G+  LG E  KN+ L GV       
Sbjct: 429 DSEDIKPSNSRYDAQISVFGSKLQKKLEEANTFVVGSGALGCEFLKNLALMGVSCSPKGK 488

Query: 363 VTVHDTAKVALTDLSAQFYLTEQDVGRNRAEACREKLQELN 485
           +T+ D   +  ++LS QF   + ++ + ++         +N
Sbjct: 489 LTITDDDVIEKSNLSRQFLFRDWNIRQAKSTVAAAAASAIN 529

>sp|P31252|UBA3_WHEAT Ubiquitin-activating enzyme E1 3 gi|7437981|pir||T06483 probable
           ubiquitin-protein ligase (EC 6.3.2.19) E1 - wheat
           gi|170686|gb|AAA34266.1| ubiquitin activating enzyme
          Length = 1053

 Score =  129 bits (323), Expect = 3e-29
 Identities = 63/105 (60%), Positives = 76/105 (72%)
 Frame = +3

Query: 180 AKGGAADGAHVEIDENLHSRQLAVYGREAMKRMATSSVLICGANGLGVEVAKNVILAGVR 359
           A  GA   A  EIDE+LHSRQLAVYGRE M+R+  S VL+ G NGLG E+AKN+ LAGV+
Sbjct: 34  AAAGAVTAAPQEIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAEIAKNLALAGVK 93

Query: 360 GVTVHDTAKVALTDLSAQFYLTEQDVGRNRAEACREKLQELNTGV 494
            VT+HD   V + DLS  F+L+E D+G+NRA AC  KLQELN  V
Sbjct: 94  SVTIHDVKTVKMWDLSGNFFLSEDDIGKNRAAACVAKLQELNNAV 138

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +3

Query: 225 NLHSRQLAVYGREAMKRMATSSVLICGANGLGVEVAKNVILAGVR-----GVTVHDTAKV 389
           N +  Q++V+G +  K+M  ++  + G+  LG E  KN+ L GV       +T+ D   +
Sbjct: 446 NRYDAQVSVFGSKLQKKMEEANTFVVGSGALGCEFLKNLALMGVSCSSKGKLTITDDDII 505

Query: 390 ALTDLSAQFYLTEQDVGRNRAEACREKLQELN 485
             ++LS QF   + ++G+ ++         +N
Sbjct: 506 EKSNLSRQFLFRDWNIGQAKSTVAATAASAIN 537

>sp|P20973|UBA1_WHEAT Ubiquitin-activating enzyme E1 1 gi|100841|pir||A38373
           ubiquitin-protein ligase (EC 6.3.2.19) E1 - wheat
           gi|170780|gb|AAA34308.1| ubiquitin-activating enzyme E1
          Length = 1051

 Score =  128 bits (322), Expect = 3e-29
 Identities = 68/128 (53%), Positives = 88/128 (68%)
 Frame = +3

Query: 111 MSKRTADGSTETPSAKKTATTMSAKGGAADGAHVEIDENLHSRQLAVYGREAMKRMATSS 290
           + K+T  G  E    +  A  M+ +G        EIDE+LHSRQLAVYGRE MKR+  S+
Sbjct: 16  LQKKTRAGEGEVTREEGDAA-MAGRGN-------EIDEDLHSRQLAVYGRETMKRLFGSN 67

Query: 291 VLICGANGLGVEVAKNVILAGVRGVTVHDTAKVALTDLSAQFYLTEQDVGRNRAEACREK 470
           VL+ G  GLG E+AKN++LAGV+ VT+HD   V L DLS+ F+L+E DVG+NRA+AC +K
Sbjct: 68  VLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGNVELWDLSSNFFLSENDVGQNRAQACVQK 127

Query: 471 LQELNTGV 494
           LQELN  V
Sbjct: 128 LQELNNAV 135

 Score = 38.9 bits (89), Expect = 0.035
 Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
 Frame = +3

Query: 231 HSRQLAVYGREAMKRMATSSVLICGANGLGVEVAKNVILAGVR-----GVTVHDTAKVAL 395
           +  Q++V+G +   ++  + + + G+  LG E  KN+ L G+       +T+ D   +  
Sbjct: 445 YDAQISVFGSKLQNKLEEAKIFMVGSGALGCEFLKNLALMGISCSQNGNLTLTDDDVIEK 504

Query: 396 TDLSAQFYLTEQDVGRNRAEACREKLQELN 485
           ++LS QF   + ++G+ ++         +N
Sbjct: 505 SNLSRQFLFRDWNIGQPKSTVAATAAMVIN 534

>sp|P31251|UBA2_WHEAT Ubiquitin-activating enzyme E1 2 gi|170684|gb|AAA34265.1| ubiquitin
           activating enyme
          Length = 1051

 Score =  125 bits (315), Expect = 2e-28
 Identities = 67/128 (52%), Positives = 87/128 (67%)
 Frame = +3

Query: 111 MSKRTADGSTETPSAKKTATTMSAKGGAADGAHVEIDENLHSRQLAVYGREAMKRMATSS 290
           + K+T  G  E    +  A  M+ +G        EIDE+LHSRQLAVYGRE MK +  S+
Sbjct: 16  LQKKTRAGEGEATREEGDAA-MAGRGN-------EIDEDLHSRQLAVYGRETMKPLFGSN 67

Query: 291 VLICGANGLGVEVAKNVILAGVRGVTVHDTAKVALTDLSAQFYLTEQDVGRNRAEACREK 470
           VL+ G  GLG E+AKN++LAGV+ VT+HD   V L DLS+ F+L+E DVG+NRA+AC +K
Sbjct: 68  VLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGNVELWDLSSNFFLSENDVGQNRAQACVQK 127

Query: 471 LQELNTGV 494
           LQELN  V
Sbjct: 128 LQELNNAV 135

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = +3

Query: 231 HSRQLAVYGREAMKRMATSSVLICGANGLGVEVAKNVILAGVR-----GVTVHDTAKVAL 395
           +  Q++V+G     ++  + + + G+  LG E  KN+ L G+       +TV D   +  
Sbjct: 445 YDAQISVFGSTLQNKLEEAKIFMVGSGALGCEFLKNLALMGISCSQNGNLTVTDDDVIEK 504

Query: 396 TDLSAQFYLTEQDVGRNRAEACREKLQELN 485
           ++LS QF   + ++G+ ++         +N
Sbjct: 505 SNLSRQFLFRDWNIGQPKSTVAATAAMVIN 534

>dbj|BAB19357.1| ubiquitin activating enzyme [Xenopus laevis]
          Length = 1059

 Score =  124 bits (311), Expect = 6e-28
 Identities = 71/136 (52%), Positives = 89/136 (65%), Gaps = 7/136 (5%)
 Frame = +3

Query: 108 LMSKRTADGS-TETPSAKKTATTMS------AKGGAADGAHVEIDENLHSRQLAVYGREA 266
           L  KR   GS T+T S   ++ ++S      A G A +G   EIDE L+SRQL V G +A
Sbjct: 6   LSKKRRVSGSETKTGSNCSSSKSVSTDQPAPANGMARNGNSTEIDEGLYSRQLYVLGHDA 65

Query: 267 MKRMATSSVLICGANGLGVEVAKNVILAGVRGVTVHDTAKVALTDLSAQFYLTEQDVGRN 446
           MKRM  S+VLI G +GLGVE+AKN+ILAGV+ VT+HD       DLS+QFYL E D+G+N
Sbjct: 66  MKRMQNSNVLISGMSGLGVEIAKNIILAGVKSVTIHDQHNTDWADLSSQFYLRESDIGKN 125

Query: 447 RAEACREKLQELNTGV 494
           RAE    +L ELNT V
Sbjct: 126 RAEVSHPRLAELNTYV 141



EST assemble image


clone accession position
1 MXL041g01_r BP095432 1 444
2 LCL026f10_r AV627435 10 473
3 MXL093c12_r BP098440 21 467
4 MXL008h08_r BP093476 21 325
5 HCL084d12_r AV644233 21 497
6 MXL022b05_r BP094369 21 454
7 MXL073f04_r BP097318 21 481
8 HCL017b12_r AV640488 180 407




Chlamydomonas reinhardtii
Kazusa DNA Research Institute