KCC002319A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC002319A_C01 KCC002319A_c01
gcttaaatcattgccactgcTTAATATTAAACTATCCAGAAGGCCTTGGGCGCTTTCCTG
GTTTCAAGACGTTCCGTTGTTGGACCTCTCCTCGTTGTCGACCAGTACAGCTGCACATAC
TTTTAGTGCACTTAAATGAAGCCCTTAAAAATCCCGAGGACCCCTCCGCTGCACACGACG
CCGCGGCGGCAAGTCAGCCTTGGTGCGACGGTTGCCCTCCTTCTGGCGCTTGCTCCTCTC
GCTGCTACCCGGAAGGCGCCTCACTCTCACGATGTTGGGGACTATTGTCCTCCAGAGCCG
GCGTCTGGGCTCATGAAGTTCAGATCGGTGCAGGTGGAGAACAGCGTGTGCGTGCCGAAT
GCGGTCGACGTGATCGGCACAAGCGTGTACGCCTGCTTCAAGGAGTTCCGCATCGATGTT
GTTGGTTGCGACGTTACCATGCGCGCCGACGGGGACCTTTACGCGGGACCGGGCCGCCTG
CCATGTGCGCTGTTTGGGCTGAAGGGCAATCTCACACCGGACGGGTTGGAGGCTCGCGTG
TGGGCTGACGTGGACGGACGCGGCCTGTTGGACTACTTTCGTAACCAGCCCGAGGCCGTG
ACGGCTCTGAAGCTGGCCAGCCCTCAGGCGGTGGTGAAGGGCATCTGGGCCTTCCTGCGC
ACCTTCACCACCGACACGCGGTTCGCGGATGATTCCTGGATCGATG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002319A_C01 KCC002319A_c01
(706 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty ... 48 1e-04
gb|AAH36187.1| SRRM1 protein [Homo sapiens] 48 1e-04
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix prote... 43 0.004
ref|NP_823047.1| hypothetical protein [Streptomyces avermitilis ... 43 0.005
gb|AAK13122.1|AC080019_14 Polyprotein [Oryza sativa] gi|31431781... 43 0.005
>ref|NP_005830.1| Ser/Arg-related nuclear matrix protein (plenty of prolines 101-l;
Ser/Arg-related nuclear matrix protein (plenty of
prolines 101-like) [Homo sapiens]
gi|3005587|gb|AAC09321.1| Ser/Arg-related nuclear matrix
protein [Homo sapiens]
gi|33150824|gb|AAP97290.1|AF419855_1 Ser/Arg-related
nuclear matrix protein [Homo sapiens]
Length = 820
Score = 48.1 bits (113), Expect = 1e-04
Identities = 52/188 (27%), Positives = 73/188 (38%), Gaps = 23/188 (12%)
Frame = -1
Query: 652 RPRCPSPPPEGWPASEPSRPRA------------GYESSPTGRVRPRQPTREPPTRPV*D 509
R R P+PPP S P R R+ Y SP + R P P R
Sbjct: 567 RRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 626
Query: 508 CPSAQTAHMAGGPVPRKGP-RRRAW*RRNQQHRCGTP*SRRTRLCRSRRPHSARTRCSPP 332
P + + P R P +R + +HR G+ SR TR RS +P+ + P
Sbjct: 627 PPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRP 686
Query: 331 API*TS*AQTPALE--DNSPQHRESEAPS--G*QREEQAPE------GGQPSHQG*LAAA 182
TS + P +SPQ R+S +PS +R + PE PS Q +
Sbjct: 687 RAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVS 746
Query: 181 ASCAAEGS 158
+S + GS
Sbjct: 747 SSRSVSGS 754
Score = 37.0 bits (84), Expect = 0.30
Identities = 53/209 (25%), Positives = 78/209 (36%), Gaps = 5/209 (2%)
Frame = -1
Query: 649 PRCPSPPPEGWPASEP--SRPRAGYESSPTGRVRPRQPTREPPTRPV*DCPSAQTAHMAG 476
P+ PSP E +RPR+ S R R R P+ P R +
Sbjct: 256 PKEPSPEKNSKKEQEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRR-------RHRSDKMY 308
Query: 475 GPVPRKGPRRRAW*RRNQQHRCGTP*SRRTRLCRSRRPHSARTRCSPPAPI*TS*AQTPA 296
P R PRRR RR R P R RSR P R R S A + S + + +
Sbjct: 309 SPRRRPSPRRRPSPRRRTPPRRMPPPPRHR---RSRSPVRRRRRSS--ASLSGSSSSSSS 363
Query: 295 LEDNSPQHRESEAPSG*QREEQ--APEGGQPSHQG*LAAAASCAAEGSSGFLRASFKCTK 122
SP + + S R+ + +P P + + A+ S + S + K
Sbjct: 364 SRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPKTRDSPTPQQSNRTRK 423
Query: 121 SMCSCT-GRQRGEVQQRNVLKPGKRPRPS 38
S S + GR G+V + + + P P+
Sbjct: 424 SRVSVSPGRTSGKVTKHKGTEKRESPSPA 452
>gb|AAH36187.1| SRRM1 protein [Homo sapiens]
Length = 904
Score = 48.1 bits (113), Expect = 1e-04
Identities = 52/188 (27%), Positives = 73/188 (38%), Gaps = 23/188 (12%)
Frame = -1
Query: 652 RPRCPSPPPEGWPASEPSRPRA------------GYESSPTGRVRPRQPTREPPTRPV*D 509
R R P+PPP S P R R+ Y SP + R P P R
Sbjct: 569 RRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 628
Query: 508 CPSAQTAHMAGGPVPRKGP-RRRAW*RRNQQHRCGTP*SRRTRLCRSRRPHSARTRCSPP 332
P + + P R P +R + +HR G+ SR TR RS +P+ + P
Sbjct: 629 PPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRP 688
Query: 331 API*TS*AQTPALE--DNSPQHRESEAPS--G*QREEQAPE------GGQPSHQG*LAAA 182
TS + P +SPQ R+S +PS +R + PE PS Q +
Sbjct: 689 RAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVS 748
Query: 181 ASCAAEGS 158
+S + GS
Sbjct: 749 SSRSVSGS 756
Score = 32.0 bits (71), Expect = 9.5
Identities = 40/153 (26%), Positives = 54/153 (35%), Gaps = 11/153 (7%)
Frame = -1
Query: 646 RCPSPPPEGWPASEPSRPRAGYESSPTGRVRPRQPTREPPTRPV*DCPSAQTAHMAGGPV 467
R SP P R R SP R R P+ PP R P+ P
Sbjct: 527 RSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRR-RTPTPPPRRRTPSPP 585
Query: 466 PRK---GPRRRAW*RRNQQHRCGTP*SRRT--------RLCRSRRPHSARTRCSPPAPI* 320
PR+ PRR + +++ P RRT R P R SPP
Sbjct: 586 PRRRSPSPRRYS-PPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQR 644
Query: 319 TS*AQTPALEDNSPQHRESEAPSG*QREEQAPE 221
+S S +HR+ +PS RE ++P+
Sbjct: 645 SSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQ 677
Score = 32.0 bits (71), Expect = 9.5
Identities = 33/119 (27%), Positives = 43/119 (35%), Gaps = 11/119 (9%)
Frame = -1
Query: 649 PRCPSPPPEGWPASEPSR--PRAGYESSPTGRVRPRQPTREPPTRPV*DCPSAQTAHMAG 476
P+ PSP E + PR+ S R R R P+ P R + +
Sbjct: 256 PKEPSPEKNSKKEKEKEKTQPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRP 315
Query: 475 GPVPRKGPRRRAW*RR----NQQHRCGTP*SRRTRLC-----RSRRPHSARTRCSPPAP 326
P R PRRR RR + R +P RR R S S+R+R P P
Sbjct: 316 SPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKP 374
>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
plenty-of-prolines-101; serine/arginine repetitive matrix
protein 1 [Rattus norvegicus]
Length = 958
Score = 43.1 bits (100), Expect = 0.004
Identities = 54/189 (28%), Positives = 72/189 (37%), Gaps = 24/189 (12%)
Frame = -1
Query: 652 RPRCPSPPPEGWPASEPSRPRA------------GYESSPTGRVRPRQPTREPPTRPV*D 509
R R P+PPP S P R R+ Y SP + R P P R
Sbjct: 623 RRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPS 682
Query: 508 CPSAQTAHMAGGPVPRKGP-RRRAW*RRNQQHRCGTP*SRRTRLCRSRRP---HSARTRC 341
P + + P R P +R + +HR G+ R TR RS +P HS R
Sbjct: 683 PPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR- 741
Query: 340 SPPAPI*TS*AQTPALEDNSPQHRESEAPS--G*QREEQAPE------GGQPSHQG*LAA 185
P AP +S SPQ R+S +PS +R + PE PS Q
Sbjct: 742 -PRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRV 800
Query: 184 AASCAAEGS 158
++S + GS
Sbjct: 801 SSSRSVSGS 809
Score = 40.0 bits (92), Expect = 0.035
Identities = 53/208 (25%), Positives = 82/208 (38%), Gaps = 4/208 (1%)
Frame = -1
Query: 649 PRCPSPPPEGWPASEPSRPRAGYESSPTGRVRPRQPTREPPTRPV*DCPSAQTAHMAGGP 470
P+ PSP E +RPR+ S R R R P+ P R ++ + P
Sbjct: 315 PKEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRR------RHRSRSRSYSP 368
Query: 469 VPRKGPRRRAW*RRNQQHRCGTP*SRRTRLCRSRRPHSARTRCSPPAPI*TS*AQTPALE 290
R PRRR RR R P R RSR P R R S A + S + + +
Sbjct: 369 RRRPSPRRRPSPRRRTPPRRMPPPPRHR---RSRSPGRRRRRSS--ASLSGSSSSSSSSR 423
Query: 289 DNSPQHRESEAPSG*QREEQ--APEGGQPSHQG*LAAAASCAAE-GSSGFLRASFKCTKS 119
SP + + S R+ + +P P + ++ A+ + S + S + KS
Sbjct: 424 SRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKS 483
Query: 118 MCSCT-GRQRGEVQQRNVLKPGKRPRPS 38
S + GR G+V + + + P P+
Sbjct: 484 RVSVSPGRTSGKVTKHKGTEKRESPSPA 511
Score = 35.4 bits (80), Expect = 0.86
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Frame = -1
Query: 706 HRSRNHPRTACRW*RCA--GRPRCPSPPPEGWPASEPSRPRAGYESSPTGRVRPRQPTRE 533
HR + P + R R + PSP P S P R G +SP GR P TR
Sbjct: 714 HRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTR- 772
Query: 532 PPTRPV*DCPSAQTAHMAGGPVPR 461
P R V P + A P P+
Sbjct: 773 -PIRRVSRTPEPKKIKKAASPSPQ 795
>ref|NP_823047.1| hypothetical protein [Streptomyces avermitilis MA-4680]
gi|29605516|dbj|BAC69582.1| hypothetical protein
[Streptomyces avermitilis MA-4680]
Length = 441
Score = 42.7 bits (99), Expect = 0.005
Identities = 37/94 (39%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = -1
Query: 601 SRPRAG-YESSPTGRVRPRQPTREPPTRPV*DCPSAQTAHMAGGPVPRKGP-RRRAW*RR 428
+R R G + + +GR RPR P R RP +A+TA G P R+GP RRR RR
Sbjct: 6 TRLRGGTHAADGSGRTRPR-PLRPAAARP----GTARTAGTRGRPRRRRGPPRRRTRRRR 60
Query: 427 NQQHRCGTP*SRRTRLCRSRRPHSARTRCSPPAP 326
+ R G R R R RP RT PAP
Sbjct: 61 PRPPRRGLRLLRAARSVRGPRPRRRRTGRPGPAP 94
>gb|AAK13122.1|AC080019_14 Polyprotein [Oryza sativa] gi|31431781|gb|AAP53507.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 42.7 bits (99), Expect = 0.005
Identities = 53/176 (30%), Positives = 65/176 (36%), Gaps = 9/176 (5%)
Frame = -1
Query: 697 RNHPRTACRW*RCAGRPRCPSPPPEGWPASEPSRPRAGYESSPTGRVRPRQP---TREPP 527
R R R R G P + P G P SRP + P R RPR+P R PP
Sbjct: 54 RRRRRAPVRRRRRPGPPPVSASPSSGSPRPRRSRPPLRFARRPPERRRPRRPEPRRRLPP 113
Query: 526 TR-PV*DCPSAQ----TAHMAGG-PVPRKGPRRRAW*RRNQQHRCGTP*SRRTRLCRSRR 365
R P P + TAH P + P RRA RR + G SR RLCR
Sbjct: 114 LRSPFPSSPLTRGEPWTAHFVSPFPPLSRAPLRRAGGRRRRPSGRGCAASR--RLCR--- 168
Query: 364 PHSARTRCSPPAPI*TS*AQTPALEDNSPQHRESEAPSG*QREEQAPEGGQPSHQG 197
R R P A + P + P+ R + G R + G +H G
Sbjct: 169 --RGRLRARPAAAM-----WGPVVSRRRPRVRLTRGTHGAGRRKPRAPGPPWTHLG 217
EST assemble image
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clone |
accession |
position |
| 1 |
LCL024f03_r |
AV627299 |
1 |
208 |
| 2 |
HCL055h08_r |
AV642677 |
21 |
492 |
| 3 |
HCL017a10_r |
AV640482 |
268 |
693 |
| 4 |
MXL074f02_r |
BP097373 |
342 |
706 |
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Chlamydomonas reinhardtii
Kazusa DNA Research Institute